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Conserved domains on  [gi|660560969|gb|AIE03914|]
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conjugal transfer protein (plasmid) [Klebsiella variicola]

Protein Classification

fertility inhibition protein FinO( domain architecture ID 11486840)

fertility inhibition protein FinO is one of the components on the FinOP fertility inhibition complex, which inhibits the expression of traJ gene, which in turn regulates the expression of some 20 transfer genes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13754 PRK13754
fertility inhibition protein FinO;
1-197 7.48e-75

fertility inhibition protein FinO;


:

Pssm-ID: 184304 [Multi-domain]  Cd Length: 186  Bit Score: 223.21  E-value: 7.48e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 660560969   1 MAEEKRPVLSLKRKPAENSTAPAEATpapgvvrrkkVVVVSSPPAWKAKKEkleklkQAAEAAARNAAPVPVKAEKTPPP 80
Cdd:PRK13754   1 MTEQKRPVLTLKRKTEGETPVRSRKT----------IINVTTPPKWKVKKQ------KLAEKAAREAELAAKKAQARQAL 64

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 660560969  81 VRYLRLLPPEQAIMTLKAFWPQLFDGNSPRLLATGMREQLFADIVNRDLPLSHKQVIKCLKSLTRSAGYLSRMKEGASRY 160
Cdd:PRK13754  65 SIYLNLPPLDEAVNTLKPWWPGLFDGDTPRLLACGIREVLLEDVAQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRY 144

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 660560969 161 DLQGNAVATVTAEEAQYASERmMKELLRTERMRSQSA 197
Cdd:PRK13754 145 DTEGYVTEHISQEEEAYAAER-LDKIRRQNRIKAELQ 180
 
Name Accession Description Interval E-value
PRK13754 PRK13754
fertility inhibition protein FinO;
1-197 7.48e-75

fertility inhibition protein FinO;


Pssm-ID: 184304 [Multi-domain]  Cd Length: 186  Bit Score: 223.21  E-value: 7.48e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 660560969   1 MAEEKRPVLSLKRKPAENSTAPAEATpapgvvrrkkVVVVSSPPAWKAKKEkleklkQAAEAAARNAAPVPVKAEKTPPP 80
Cdd:PRK13754   1 MTEQKRPVLTLKRKTEGETPVRSRKT----------IINVTTPPKWKVKKQ------KLAEKAAREAELAAKKAQARQAL 64

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 660560969  81 VRYLRLLPPEQAIMTLKAFWPQLFDGNSPRLLATGMREQLFADIVNRDLPLSHKQVIKCLKSLTRSAGYLSRMKEGASRY 160
Cdd:PRK13754  65 SIYLNLPPLDEAVNTLKPWWPGLFDGDTPRLLACGIREVLLEDVAQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRY 144

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 660560969 161 DLQGNAVATVTAEEAQYASERmMKELLRTERMRSQSA 197
Cdd:PRK13754 145 DTEGYVTEHISQEEEAYAAER-LDKIRRQNRIKAELQ 180
ProQ pfam04352
ProQ/FINO family; This family includes ProQ, which is required for full activation of the ...
 89-195 1.17e-29

ProQ/FINO family; This family includes ProQ, which is required for full activation of the osmoprotectant transporter, ProP, in Escherichia coli. This family includes several bacterial fertility inhibition (FINO) proteins. The conjugative transfer of F-like plasmids is repressed by FinO, an RNA binding protein. FinO interacts with the F-plasmid encoded traJ mRNA and its antisense RNA, FinP, stabilising FinP against endonucleolytic degradation and facilitating sense-antisense RNA recognition. ProQ operates as an RNA-chaperone, binding RNA and bringing about both RNA strand-exchange and RNA duplexing. This suggests that in fact it does not regulate ProP transcription but rather regulates ProP translation through activity as an RNA-binding protein.


Pssm-ID: 461270  Cd Length: 106  Bit Score: 105.38  E-value: 1.17e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 660560969   89 PEQAIMTLKAFWPQLFDGNS-PRLLATGMREQLFAdiVNRDLPLSHKQVIKCLKSLTRSAGYLSRMKEGASRYDLQGNAV 167
Cdd:pfam04352   1 VKELIARLAERFPLAFPAEGeKLPLKIGIFQDLLE--LADDLGLSKTQLRQALRTYTRSWRYLAAMKEGAARVDLDGNPA 78

                          90       100
                  ....*....|....*....|....*...
gi 660560969  168 ATVTAEEAQYASERMMKELLRTERMRSQ 195
Cdd:pfam04352  79 GEVTAEHAEHARQQLARRRQKRAQRRAA 106
ProQ COG3109
sRNA-binding protein ProQ [Signal transduction mechanisms];
86-197 1.23e-28

sRNA-binding protein ProQ [Signal transduction mechanisms];


Pssm-ID: 442343 [Multi-domain]  Cd Length: 153  Bit Score: 104.29  E-value: 1.23e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 660560969  86 LLPPEQAIMTLKAFWPQLFDGNSPRLLATGMREQLFADIvnRDLPLSHKQVIKCLKSLTRSAGYLSRMKEGASRYDLQGN 165
Cdd:COG3109   10 LESPKEVIAYLAERFPACFDLEEPKPLKIGIFQDLAARL--PDDELSKTQLRRALRRYTRSWRYLKAVKEGAQRVDLDGN 87

                         90       100       110
                 ....*....|....*....|....*....|..
gi 660560969 166 AVATVTAEEAQYASERMMKELLRTERMRSQSA 197
Cdd:COG3109   88 PAGEVTEEHAEHAREQLAERKAKVAARRAAEQ 119
FinO_conjug_rep cd00236
FinO bacterial conjugation repressor domain; the basic protein FinO is part of the the two ...
 82-195 1.20e-19

FinO bacterial conjugation repressor domain; the basic protein FinO is part of the the two component FinOP system which is responsible for repressing bacterial conjugation; the FinOP system represses the transfer (tra) operon of the F-plasmid which encodes the proteins responsible for conjugative transfer of this plasmid from host to recipient Escherichia coli cells; antisense RNA, FinP is thought to interact with traJ mRNA to occlude its ribosome binding site, blocking traJ translation and thereby inhibiting transcription of the tra operon; FinO protects FinP against degradation by binding to FinP and sterically blocking the cellular endonuclease RNase E; FinO also also binds to the complementary stem-loop structures in traJ mRNA and promotes duplex formation between FinP and traJ RNA in vitro; this domain contains two independent RNA binding regions


Pssm-ID: 238145  Cd Length: 146  Bit Score: 81.09  E-value: 1.20e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 660560969  82 RYLRLLPPEQAIMTLKAFWPQLFDGNSPRLLATGMREQLFADIV-NRDLPLSHKQVIKCLKSLTRSAGYLSRMKEGASRY 160
Cdd:cd00236   29 IYLNLPTVEYAVECLKKWFPGLFPGDTPRLLKCGIKDGILQDVAqHPNIPLTHEELRCAVKAITRRESYLQAMVAGAPRY 108

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 660560969 161 DLQGNAVATVTAEEAQYASERMMKeLLRTERMRSQ 195
Cdd:cd00236  109 DLEGYVAGHISQEAEVYAARLLDK-IRRQQRIKKE 142
ProQ smart00945
ProQ/FINO family; This family includes ProQ, which is required for full activation of the ...
 85-184 1.42e-15

ProQ/FINO family; This family includes ProQ, which is required for full activation of the osmoprotectant transporter, ProQ, in Escherichia coli.


Pssm-ID: 198013 [Multi-domain]  Cd Length: 113  Bit Score: 69.31  E-value: 1.42e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 660560969    85 RLLPPEQAIMTLKAFWPQLFDGN-SPRLLATGMREQLFADIVNRDLPlSHKQVIKCLKSLTRSAGYLSRMKEGASRYDLQ 163
Cdd:smart00945   1 KLDDVKALLEKLQERFPLCFGANgAPKPLKIGIFQDLLARLEEDEKV-SKTALREALRTYTRSWRYLKAVKAGAVRVDLQ 79

                           90       100
                   ....*....|....*....|.
gi 660560969   164 GNAVATVTAEEAQYASERMMK 184
Cdd:smart00945  80 GNPAEEVTEEHAAHALKKLKE 100
 
Name Accession Description Interval E-value
PRK13754 PRK13754
fertility inhibition protein FinO;
1-197 7.48e-75

fertility inhibition protein FinO;


Pssm-ID: 184304 [Multi-domain]  Cd Length: 186  Bit Score: 223.21  E-value: 7.48e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 660560969   1 MAEEKRPVLSLKRKPAENSTAPAEATpapgvvrrkkVVVVSSPPAWKAKKEkleklkQAAEAAARNAAPVPVKAEKTPPP 80
Cdd:PRK13754   1 MTEQKRPVLTLKRKTEGETPVRSRKT----------IINVTTPPKWKVKKQ------KLAEKAAREAELAAKKAQARQAL 64

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 660560969  81 VRYLRLLPPEQAIMTLKAFWPQLFDGNSPRLLATGMREQLFADIVNRDLPLSHKQVIKCLKSLTRSAGYLSRMKEGASRY 160
Cdd:PRK13754  65 SIYLNLPPLDEAVNTLKPWWPGLFDGDTPRLLACGIREVLLEDVAQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRY 144

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 660560969 161 DLQGNAVATVTAEEAQYASERmMKELLRTERMRSQSA 197
Cdd:PRK13754 145 DTEGYVTEHISQEEEAYAAER-LDKIRRQNRIKAELQ 180
ProQ pfam04352
ProQ/FINO family; This family includes ProQ, which is required for full activation of the ...
 89-195 1.17e-29

ProQ/FINO family; This family includes ProQ, which is required for full activation of the osmoprotectant transporter, ProP, in Escherichia coli. This family includes several bacterial fertility inhibition (FINO) proteins. The conjugative transfer of F-like plasmids is repressed by FinO, an RNA binding protein. FinO interacts with the F-plasmid encoded traJ mRNA and its antisense RNA, FinP, stabilising FinP against endonucleolytic degradation and facilitating sense-antisense RNA recognition. ProQ operates as an RNA-chaperone, binding RNA and bringing about both RNA strand-exchange and RNA duplexing. This suggests that in fact it does not regulate ProP transcription but rather regulates ProP translation through activity as an RNA-binding protein.


Pssm-ID: 461270  Cd Length: 106  Bit Score: 105.38  E-value: 1.17e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 660560969   89 PEQAIMTLKAFWPQLFDGNS-PRLLATGMREQLFAdiVNRDLPLSHKQVIKCLKSLTRSAGYLSRMKEGASRYDLQGNAV 167
Cdd:pfam04352   1 VKELIARLAERFPLAFPAEGeKLPLKIGIFQDLLE--LADDLGLSKTQLRQALRTYTRSWRYLAAMKEGAARVDLDGNPA 78

                          90       100
                  ....*....|....*....|....*...
gi 660560969  168 ATVTAEEAQYASERMMKELLRTERMRSQ 195
Cdd:pfam04352  79 GEVTAEHAEHARQQLARRRQKRAQRRAA 106
ProQ COG3109
sRNA-binding protein ProQ [Signal transduction mechanisms];
86-197 1.23e-28

sRNA-binding protein ProQ [Signal transduction mechanisms];


Pssm-ID: 442343 [Multi-domain]  Cd Length: 153  Bit Score: 104.29  E-value: 1.23e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 660560969  86 LLPPEQAIMTLKAFWPQLFDGNSPRLLATGMREQLFADIvnRDLPLSHKQVIKCLKSLTRSAGYLSRMKEGASRYDLQGN 165
Cdd:COG3109   10 LESPKEVIAYLAERFPACFDLEEPKPLKIGIFQDLAARL--PDDELSKTQLRRALRRYTRSWRYLKAVKEGAQRVDLDGN 87

                         90       100       110
                 ....*....|....*....|....*....|..
gi 660560969 166 AVATVTAEEAQYASERMMKELLRTERMRSQSA 197
Cdd:COG3109   88 PAGEVTEEHAEHAREQLAERKAKVAARRAAEQ 119
FinO_conjug_rep cd00236
FinO bacterial conjugation repressor domain; the basic protein FinO is part of the the two ...
 82-195 1.20e-19

FinO bacterial conjugation repressor domain; the basic protein FinO is part of the the two component FinOP system which is responsible for repressing bacterial conjugation; the FinOP system represses the transfer (tra) operon of the F-plasmid which encodes the proteins responsible for conjugative transfer of this plasmid from host to recipient Escherichia coli cells; antisense RNA, FinP is thought to interact with traJ mRNA to occlude its ribosome binding site, blocking traJ translation and thereby inhibiting transcription of the tra operon; FinO protects FinP against degradation by binding to FinP and sterically blocking the cellular endonuclease RNase E; FinO also also binds to the complementary stem-loop structures in traJ mRNA and promotes duplex formation between FinP and traJ RNA in vitro; this domain contains two independent RNA binding regions


Pssm-ID: 238145  Cd Length: 146  Bit Score: 81.09  E-value: 1.20e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 660560969  82 RYLRLLPPEQAIMTLKAFWPQLFDGNSPRLLATGMREQLFADIV-NRDLPLSHKQVIKCLKSLTRSAGYLSRMKEGASRY 160
Cdd:cd00236   29 IYLNLPTVEYAVECLKKWFPGLFPGDTPRLLKCGIKDGILQDVAqHPNIPLTHEELRCAVKAITRRESYLQAMVAGAPRY 108

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 660560969 161 DLQGNAVATVTAEEAQYASERMMKeLLRTERMRSQ 195
Cdd:cd00236  109 DLEGYVAGHISQEAEVYAARLLDK-IRRQQRIKKE 142
ProQ smart00945
ProQ/FINO family; This family includes ProQ, which is required for full activation of the ...
 85-184 1.42e-15

ProQ/FINO family; This family includes ProQ, which is required for full activation of the osmoprotectant transporter, ProQ, in Escherichia coli.


Pssm-ID: 198013 [Multi-domain]  Cd Length: 113  Bit Score: 69.31  E-value: 1.42e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 660560969    85 RLLPPEQAIMTLKAFWPQLFDGN-SPRLLATGMREQLFADIVNRDLPlSHKQVIKCLKSLTRSAGYLSRMKEGASRYDLQ 163
Cdd:smart00945   1 KLDDVKALLEKLQERFPLCFGANgAPKPLKIGIFQDLLARLEEDEKV-SKTALREALRTYTRSWRYLKAVKAGAVRVDLQ 79

                           90       100
                   ....*....|....*....|.
gi 660560969   164 GNAVATVTAEEAQYASERMMK 184
Cdd:smart00945  80 GNPAEEVTEEHAAHALKKLKE 100
PRK04950 PRK04950
ProP expression regulator; Provisional
 120-178 1.19e-03

ProP expression regulator; Provisional


Pssm-ID: 235322 [Multi-domain]  Cd Length: 213  Bit Score: 38.37  E-value: 1.19e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 660560969 120 LFADIVNR---DLPLSHKQVIKCLKSLTRSAGYLSRMKEGASRYDLQGNAVATVTAEEAQYA 178
Cdd:PRK04950  38 IFQDLAERladDEKVSKTQLRSALRLYTSSWRYLYGVKAGAQRVDLDGNPCGELEEEHVEHA 99
FinO_N pfam12602
Fertility inhibition protein N terminal; This domain family is found in bacteria, and is ...
 1-48 2.11e-03

Fertility inhibition protein N terminal; This domain family is found in bacteria, and is typically between 62 and 102 amino acids in length. The family is found in association with pfam04352. The FinOP (fertility inhibition) system of F-like plasmids consists of an antisense RNA (FinP) and a 22 kDa protein (FinO) which act in concert to prevent the translation of TraJ, the positive regulator of the transfer operon.


Pssm-ID: 315304  Cd Length: 62  Bit Score: 35.50  E-value: 2.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 660560969    1 MAEEKRPVLSLKRKPaeNSTAPAEAtpapgvvrRKKVVVVSSPPAWKA 48
Cdd:pfam12602   1 MTEQKRPVLTLKRKT--NGTAPARS--------RKTIINVTTPPKWKV 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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