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Conserved domains on  [gi|659898395|gb|AID69161|]
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cytochrome b, partial (mitochondrion) [Telmatobius sp. 11 PAS-2014]

Protein Classification

cytochrome b( domain architecture ID 1000033)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31791
cytochrome b; Provisional
 1-308 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00074:

Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 624.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00074  21 DLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00074 101 RGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPA 240
Cdd:MTH00074 181 AFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPA 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 659898395 241 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFWT 308
Cdd:MTH00074 261 NPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWL 328
 
Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-308 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 624.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00074  21 DLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00074 101 RGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPA 240
Cdd:MTH00074 181 AFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPA 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 659898395 241 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFWT 308
Cdd:MTH00074 261 NPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWL 328
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-307 2.78e-120

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 350.63  E-value: 2.78e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   3 PTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIGRG 82
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  83 MYYGSFlfKE----TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTR 158
Cdd:COG1290  111 FFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 159 FFTFH-FILPFIIAGVTMLHLLFLHQTGSSNPTG----LNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNilGD 233
Cdd:COG1290  189 FFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NP 266

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 659898395 234 PDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFW 307
Cdd:COG1290  267 PPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-187 1.22e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 260.76  E-value: 1.22e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:cd00284   12 DLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSF--LFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTR 158
Cdd:cd00284   92 RGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTR 171

                        170       180
                 ....*....|....*....|....*....
gi 659898395 159 FFTFHFILPFIIAGVTMLHLLFLHQTGSS 187
Cdd:cd00284  172 FFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-185 2.29e-81

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 244.21  E-value: 2.29e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395    1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:pfam00033   3 SLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   81 RGMYYGSF--LFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTR 158
Cdd:pfam00033  83 RGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTR 162

                         170       180
                  ....*....|....*....|....*..
gi 659898395  159 FFTFHFILPFIIAGVTMLHLLFLHQTG 185
Cdd:pfam00033 163 FFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 217-306 9.85e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 53.65  E-value: 9.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  217 LSLLAILSTFAPNILGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRAL 296
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90
                  ....*....|.
gi 659898395  297 IF-RPLAKLFF 306
Cdd:TIGR01156 123 PFrRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-308 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 624.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00074  21 DLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00074 101 RGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPA 240
Cdd:MTH00074 181 AFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPA 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 659898395 241 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFWT 308
Cdd:MTH00074 261 NPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWL 328
CYTB MTH00119
cytochrome b; Provisional
 1-308 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 604.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00119  21 DLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00119 101 RGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPA 240
Cdd:MTH00119 181 ALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPA 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 659898395 241 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFWT 308
Cdd:MTH00119 261 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWT 328
CYTB MTH00131
cytochrome b; Provisional
 1-308 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 601.64  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00131  20 DLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIG 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00131 100 RGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFF 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPA 240
Cdd:MTH00131 180 AFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPA 259

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 659898395 241 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFWT 308
Cdd:MTH00131 260 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327
CYTB MTH00100
cytochrome b; Provisional
 1-308 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 581.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00100  20 DLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVG 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00100 100 RGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPA 240
Cdd:MTH00100 180 AFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPA 259

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 659898395 241 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFWT 308
Cdd:MTH00100 260 NPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWL 327
CYTB MTH00191
cytochrome b; Provisional
 1-308 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 576.10  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00191  17 DLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIG 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00191  97 RGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFF 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPA 240
Cdd:MTH00191 177 TFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPA 256

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 659898395 241 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFWT 308
Cdd:MTH00191 257 NPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWL 324
CYTB MTH00156
cytochrome b; Provisional
 1-308 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 571.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00156  10 DLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIG 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00156  90 RGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFF 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPA 240
Cdd:MTH00156 170 TFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPA 249

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 659898395 241 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFWT 308
Cdd:MTH00156 250 NPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWI 317
CYTB MTH00145
cytochrome b; Provisional
 1-307 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 538.34  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00145  21 DLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00145 101 RGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPA 240
Cdd:MTH00145 181 SLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPA 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 659898395 241 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFW 307
Cdd:MTH00145 261 NPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFW 327
CYTB MTH00034
cytochrome b; Validated
 1-307 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 527.74  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00034  20 DLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIG 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00034 100 RGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFF 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPA 240
Cdd:MTH00034 180 AFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPA 259

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 659898395 241 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFW 307
Cdd:MTH00034 260 NPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFW 326
CYTB MTH00016
cytochrome b; Validated
 1-308 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 506.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00016  21 DLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00016 101 RGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPA 240
Cdd:MTH00016 181 ALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPA 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 659898395 241 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFWT 308
Cdd:MTH00016 261 NPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWL 328
CYTB MTH00022
cytochrome b; Validated
 1-307 3.62e-163

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 459.17  E-value: 3.62e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00022  19 DLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIG 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00022  99 RGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFF 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPA 240
Cdd:MTH00022 179 SLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQA 258

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 659898395 241 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFW 307
Cdd:MTH00022 259 NSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFW 325
CYTB MTH00053
cytochrome b; Provisional
 1-307 1.23e-157

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 444.92  E-value: 1.23e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00053  21 DLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00053 101 RGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFY 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPA 240
Cdd:MTH00053 181 SLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQA 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 659898395 241 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFW 307
Cdd:MTH00053 261 NPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFW 327
CYTB MTH00224
cytochrome b; Provisional
 1-307 1.33e-156

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 442.44  E-value: 1.33e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00224  21 DLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00224 101 RGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPA 240
Cdd:MTH00224 181 SFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMA 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 659898395 241 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFW 307
Cdd:MTH00224 261 NPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFW 327
CYTB MTH00033
cytochrome b; Provisional
 1-307 5.52e-125

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 362.33  E-value: 5.52e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00033  17 DLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIG 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00033  97 RGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFF 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFA--PNILGDPDNFT 238
Cdd:MTH00033 177 SLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFI 256

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 659898395 239 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFW 307
Cdd:MTH00033 257 QANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFW 325
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-307 2.78e-120

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 350.63  E-value: 2.78e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   3 PTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIGRG 82
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  83 MYYGSFlfKE----TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTR 158
Cdd:COG1290  111 FFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 159 FFTFH-FILPFIIAGVTMLHLLFLHQTGSSNPTG----LNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNilGD 233
Cdd:COG1290  189 FFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NP 266

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 659898395 234 PDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFW 307
Cdd:COG1290  267 PPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342
CYTB MTH00086
cytochrome b; Provisional
 2-289 2.64e-112

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 328.82  E-value: 2.64e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   2 LPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIGR 81
Cdd:MTH00086  10 LPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFK 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  82 GMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFFT 161
Cdd:MTH00086  90 GLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFV 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 162 FHFILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFaIMLSLLAILSTFAPNILGDPDNFTPAN 241
Cdd:MTH00086 170 LHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEAD 248

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 659898395 242 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLH 289
Cdd:MTH00086 249 PMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN 296
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-187 1.22e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 260.76  E-value: 1.22e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:cd00284   12 DLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSF--LFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTR 158
Cdd:cd00284   92 RGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTR 171

                        170       180
                 ....*....|....*....|....*....
gi 659898395 159 FFTFHFILPFIIAGVTMLHLLFLHQTGSS 187
Cdd:cd00284  172 FFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 1-286 7.26e-84

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 256.45  E-value: 7.26e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:MTH00046  11 DLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  81 RGMYYGSFLFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:MTH00046  91 RALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVF 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 161 TFHFILPFIIAGVTMLHLLFLHQTGSSNPTGL-NSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTP 239
Cdd:MTH00046 171 SVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLE 250

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 659898395 240 ANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALVFSIMVLFLLP 286
Cdd:MTH00046 251 ADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP 296
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-185 2.29e-81

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 244.21  E-value: 2.29e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395    1 DLPTPANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIG 80
Cdd:pfam00033   3 SLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   81 RGMYYGSF--LFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTR 158
Cdd:pfam00033  83 RGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTR 162

                         170       180
                  ....*....|....*....|....*..
gi 659898395  159 FFTFHFILPFIIAGVTMLHLLFLHQTG 185
Cdd:pfam00033 163 FFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
69-234 2.97e-50

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 163.95  E-value: 2.97e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   69 SFFFICIYLHIGRGMYYGSFLFKE--TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIW 146
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  147 GGFSVDNATLTRFFTFHF-ILPFIIAGVTMLHLLFLHQTGSSNPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILST 225
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 659898395  226 FAPNILGDP 234
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 188-308 6.53e-41

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 139.32  E-value: 6.53e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 188 NPTGLNSNSDKVPFHAYYSYKDILGFAIMLSLLAILSTFAPNILGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 267
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 659898395 268 KLGGVLALVFSIMVLFLLPLLHTSHQRALiFRPLAKLFFWT 308
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWV 120
PRK03735 PRK03735
cytochrome b6; Provisional
 14-189 2.30e-36

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 129.83  E-value: 2.30e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  14 FGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIGRGMYYGSFLFKE- 92
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  93 -TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFFTFH-FILPFII 170
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170
                 ....*....|....*....
gi 659898395 171 AGVTMLHLLFLHQTGSSNP 189
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
239-307 2.37e-32

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 115.65  E-value: 2.37e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 659898395  239 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIFRPLAKLFFW 307
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFW 69
petB CHL00070
cytochrome b6
 5-189 4.97e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 115.59  E-value: 4.97e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395   5 PANLSSLWNFGSLLGICLIAQIVTGLFLAMHYTADTSMAFSSIAHICRDVNNGWILRNLHANGASFFFICIYLHIGRGMY 84
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  85 YGSFlfKE----TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAAPYIGTELVQWIWGGFSVDNATLTRFF 160
Cdd:CHL00070 107 TGGF--KKprelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFY 184

                        170       180       190
                 ....*....|....*....|....*....|
gi 659898395 161 TFH-FILPFIIAGVTMLHLLFLHQTGSSNP 189
Cdd:CHL00070 185 SLHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 210-306 9.68e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 56.34  E-value: 9.68e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 210 ILGFAIMLSLLAILStfaPNILGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLH 289
Cdd:COG5679   45 ILGTIALCIGLAVLD---PAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIE 116

                         90
                 ....*....|....*...
gi 659898395 290 TSHQRALIF-RPLAKLFF 306
Cdd:COG5679  117 NVNKFQNPFrRPVATAVF 134
petD CHL00058
cytochrome b6/f complex subunit IV
 223-306 1.67e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 55.78  E-value: 1.67e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395 223 LSTFAPNILGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRALIF-RPL 301
Cdd:CHL00058  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFrRPV 128


                 ....*
gi 659898395 302 AKLFF 306
Cdd:CHL00058 129 ATTVF 133
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 217-306 9.85e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 53.65  E-value: 9.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659898395  217 LSLLAILSTFAPNILGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSIMVLFLLPLLHTSHQRAL 296
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90
                  ....*....|.
gi 659898395  297 IF-RPLAKLFF 306
Cdd:TIGR01156 123 PFrRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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