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Conserved domains on  [gi|657941433|gb|AID54928|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Strophurus taeniatus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 11-289 7.91e-113

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 329.09  E-value: 7.91e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQLTLPEST 90
Cdd:MTH00112  16 GTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSC 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 MMLTFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLLMTINSLDQKTLMALGLLSALLGGWLGLNQTQT 170
Cdd:MTH00112  96 TLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 171 RKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALISTSSKTLTDLGISQPQVPTLLAISMLALMSLGGLP 250
Cdd:MTH00112 176 RKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLP 255

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 657941433 251 PLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:MTH00112 256 PLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYL 294
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 11-289 7.91e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 329.09  E-value: 7.91e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQLTLPEST 90
Cdd:MTH00112  16 GTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSC 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 MMLTFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLLMTINSLDQKTLMALGLLSALLGGWLGLNQTQT 170
Cdd:MTH00112  96 TLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 171 RKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALISTSSKTLTDLGISQPQVPTLLAISMLALMSLGGLP 250
Cdd:MTH00112 176 RKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLP 255

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 657941433 251 PLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:MTH00112 256 PLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYL 294
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 18-281 2.82e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 93.53  E-value: 2.82e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433   18 STHWLLAWAGLEMNTLAIIPII-SKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQLTLPESTM----- 91
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433   92 ------MLTFALAMKLGLAPLHFWLPEVLQGS-TLSTALIISTWQKLAPI-----TLLLMTINSLDQKTLMALGLLSALL 159
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGApTPVSALLAATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  160 GGWLGLNQTQTRKIMAFSSIAHMGWLFMALtINPNITLITLLMYLLLTTAVFSALI----------STSSKTLTDLGISQ 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIAL-GAGTIYGIQAAIFHLLTHGLFSAGLflcagsviyrRVHTRNIRDYGGLA 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 657941433  230 PQVPTLLAISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLTSTIMALST 281
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 17-289 1.04e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 94.41  E-value: 1.04e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  17 SSTHWLLAWAGLEMNTLAIIPIIS-KQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQL-----TLPEST 90
Cdd:COG1007  120 SANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIaaalaAGGANS 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 MMLTFALAM-------KLGLAPLHFWLPEVLQGSTLSTALIIST------------------------WQK-LAPITLLL 138
Cdd:COG1007  200 PLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATapkiaafaallrllveafpglaadWQLlLAVLAVLS 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 139 MTINSLdqktlmalgllsallggwLGLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLL----TTAVFSAL 214
Cdd:COG1007  280 MTVGNL------------------AALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAylfmNLGAFAVI 341

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 215 ISTSSK-----TLTD---LGISQPqvptLLAISMLALM-SLGGLPPLTGFLPKWLILTELITNNLPLTSTIMALSTLPSL 285
Cdd:COG1007  342 LLLSRKggeaeEIEDlagLARRSP----LLALAMTIFLlSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISA 417


                 ....
gi 657941433 286 FFYL 289
Cdd:COG1007  418 YYYL 421
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-289 6.93e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 88.85  E-value: 6.93e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433   17 SSTHWLLAWAGLEMNTLAI-IPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQLTLPESTMMLTF 95
Cdd:TIGR01770 120 SSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNI 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433   96 ------------ALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLL-MTINSLD------QKTLMALGLLS 156
Cdd:TIGR01770 200 sllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrLFLYILFgfseawQIFLAIIAFLS 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  157 ALLGGWLGLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLL----MYLLLTTAVFSALISTSS------KTLTDLG 226
Cdd:TIGR01770 280 MLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLfyifIYALMSLGAFGVLSLLRSykdewiEYISDFA 359

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 657941433  227 ISQPQVPTLLAISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:TIGR01770 360 GLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYL 422
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 11-289 7.91e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 329.09  E-value: 7.91e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQLTLPEST 90
Cdd:MTH00112  16 GTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSC 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 MMLTFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLLMTINSLDQKTLMALGLLSALLGGWLGLNQTQT 170
Cdd:MTH00112  96 TLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 171 RKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALISTSSKTLTDLGISQPQVPTLLAISMLALMSLGGLP 250
Cdd:MTH00112 176 RKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLP 255

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 657941433 251 PLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:MTH00112 256 PLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYL 294
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 11-289 5.57e-106

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 311.74  E-value: 5.57e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQLTLPEST 90
Cdd:MTH00135  16 GTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPT 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 MMLTFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLLMtINSLDQKTLMALGLLSALLGGWLGLNQTQT 170
Cdd:MTH00135  96 TMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQ-IAPTNPTLLITLGLTSTLVGGWGGLNQTQL 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 171 RKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALISTSSKTLTDLGISQPQVPTLLAISMLALMSLGGLP 250
Cdd:MTH00135 175 RKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLP 254

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 657941433 251 PLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:MTH00135 255 PLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYL 293
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 11-289 5.39e-104

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 306.85  E-value: 5.39e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQLTLPEST 90
Cdd:MTH00070  16 GTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPT 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 MMLTFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLLMTINSLDQKTLMALGLLSALLGGWLGLNQTQT 170
Cdd:MTH00070  96 IMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 171 RKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALISTSSKTLTDLGISQPQVPTLLAISMLALMSLGGLP 250
Cdd:MTH00070 176 RKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLP 255

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 657941433 251 PLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:MTH00070 256 PTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYL 294
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 11-289 5.94e-93

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 278.65  E-value: 5.94e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQLTLPEST 90
Cdd:MTH00105  16 GTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTAS 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 MMLTFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLLMTINSLDQKTLMALGLLSALLGGWLGLNQTQT 170
Cdd:MTH00105  96 TLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 171 RKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALISTSSKTLTDLGISQPQVPTLLAISMLALMSLGGLP 250
Cdd:MTH00105 176 RKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLP 255

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 657941433 251 PLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:MTH00105 256 PLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYM 294
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 11-289 3.77e-76

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 235.63  E-value: 3.77e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQLTLPEST 90
Cdd:MTH00200  16 GTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSE 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 MMLTFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLLMTINSLDQKTLMALGLLSALLGGWLGLNQTQT 170
Cdd:MTH00200  96 TLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 171 RKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALISTSSKTLTDLGISQPQVPTLLAISMLALMSLGGLP 250
Cdd:MTH00200 176 RKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLP 255

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 657941433 251 PLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:MTH00200 256 PLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYL 294
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 11-289 1.16e-75

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 234.44  E-value: 1.16e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQLTLPEST 90
Cdd:MTH00041  16 GTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSS 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 MMLTFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLLMTINSLDQKTLMALGLLSALLGGWLGLNQTQT 170
Cdd:MTH00041  96 IIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQT 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 171 RKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALISTSSKTLTDLGISQPQVPTLLAISMLALMSLGGLP 250
Cdd:MTH00041 176 RKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLP 255

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 657941433 251 PLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:MTH00041 256 PLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYL 294
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 11-289 5.49e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 173.09  E-value: 5.49e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKtgqwdiSQLTLPEST 90
Cdd:MTH00160  17 GTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN------LMLFNNISS 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 MMLTFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLLMTINSldqKTLMALGLLSALLGGWLGLNQTQT 170
Cdd:MTH00160  91 MLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINN---NFIIIIIILSAIIGAIGGLNQTSL 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 171 RKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALISTSSKTLTDLGISQPQVPTLLAISMLALMSLGGLP 250
Cdd:MTH00160 168 RKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLP 247

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 657941433 251 PLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:MTH00160 248 PFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYL 286
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 11-289 1.67e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 163.90  E-value: 1.67e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISqltlpest 90
Cdd:MTH00144  16 GTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM-------- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 MMLTFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLLMTI-NSLDQKTLMALGLLSALLGGWLGLNQTQ 169
Cdd:MTH00144  88 SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdLYWLAYLLCVISVLSALVGSIGGLNQTQ 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 170 TRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALISTSSKTLTDLGISQPQVPTLLAISMLALmSLGGL 249
Cdd:MTH00144 168 VRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLLL-SLGGL 246

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 657941433 250 PPLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:MTH00144 247 PPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYL 286
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 11-289 4.34e-39

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 139.53  E-value: 4.34e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTLnawktgQWDISQLTLPEST 90
Cdd:MTH00011  18 GTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLKNITA 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 MMLTFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLLMTINSLDQKTLMALGLLSALLGGWLGLNQTQT 170
Cdd:MTH00011  92 LMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQL 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 171 RKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALISTSSKTLTDLGISQPQVPTLLAISMLALMSLGGLP 250
Cdd:MTH00011 172 RPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLP 251

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 657941433 251 PLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:MTH00011 252 PFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYL 290
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-289 5.54e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 130.95  E-value: 5.54e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTLnawktgqwdiSQLTLPEST 90
Cdd:MTH00197  10 GVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSL----------SFSNLYLSL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 M---MLTFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLLMTINSLDqkTLMALGLLSALLGGWLGLNQ 167
Cdd:MTH00197  80 LsvvLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFM--GLLICSVLSSLIGGIGGMNQ 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 168 TQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALISTSSKTLTDLGISQPQVPTLLAISMLALMSLG 247
Cdd:MTH00197 158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 657941433 248 GLPPLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:MTH00197 238 GLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYL 279
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 18-281 2.82e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 93.53  E-value: 2.82e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433   18 STHWLLAWAGLEMNTLAIIPII-SKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQLTLPESTM----- 91
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433   92 ------MLTFALAMKLGLAPLHFWLPEVLQGS-TLSTALIISTWQKLAPI-----TLLLMTINSLDQKTLMALGLLSALL 159
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGApTPVSALLAATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  160 GGWLGLNQTQTRKIMAFSSIAHMGWLFMALtINPNITLITLLMYLLLTTAVFSALI----------STSSKTLTDLGISQ 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIAL-GAGTIYGIQAAIFHLLTHGLFSAGLflcagsviyrRVHTRNIRDYGGLA 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 657941433  230 PQVPTLLAISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLTSTIMALST 281
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 17-289 1.04e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 94.41  E-value: 1.04e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  17 SSTHWLLAWAGLEMNTLAIIPIIS-KQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQL-----TLPEST 90
Cdd:COG1007  120 SANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIaaalaAGGANS 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 MMLTFALAM-------KLGLAPLHFWLPEVLQGSTLSTALIIST------------------------WQK-LAPITLLL 138
Cdd:COG1007  200 PLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATapkiaafaallrllveafpglaadWQLlLAVLAVLS 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 139 MTINSLdqktlmalgllsallggwLGLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLL----TTAVFSAL 214
Cdd:COG1007  280 MTVGNL------------------AALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAylfmNLGAFAVI 341

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 215 ISTSSK-----TLTD---LGISQPqvptLLAISMLALM-SLGGLPPLTGFLPKWLILTELITNNLPLTSTIMALSTLPSL 285
Cdd:COG1007  342 LLLSRKggeaeEIEDlagLARRSP----LLALAMTIFLlSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISA 417


                 ....
gi 657941433 286 FFYL 289
Cdd:COG1007  418 YYYL 421
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-289 6.93e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 88.85  E-value: 6.93e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433   17 SSTHWLLAWAGLEMNTLAI-IPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQLTLPESTMMLTF 95
Cdd:TIGR01770 120 SSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNI 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433   96 ------------ALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLL-MTINSLD------QKTLMALGLLS 156
Cdd:TIGR01770 200 sllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrLFLYILFgfseawQIFLAIIAFLS 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  157 ALLGGWLGLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLL----MYLLLTTAVFSALISTSS------KTLTDLG 226
Cdd:TIGR01770 280 MLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLfyifIYALMSLGAFGVLSLLRSykdewiEYISDFA 359

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 657941433  227 ISQPQVPTLLAISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:TIGR01770 360 GLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYL 422
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 11-289 8.62e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 87.78  E-value: 8.62e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAI-IPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDI-------- 81
Cdd:MTH00196   5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvln 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  82 -----SQLTLPESTMMLTFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLApITLLLMTINsLDQKTLMALGLLS 156
Cdd:MTH00196  85 sgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLG-IFSILVSIG-LNVNILLIGGLFS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 157 ALLGGWLGLNQTQTRKIMAFSSIAHMGWLFMALTINP--NITLITLLMYLLLTTAVFSALISTSSKTLTDLGISQPQVPT 234
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfeSIQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSGLSR 242

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 657941433 235 LLAISMLAL----MSLGGLPPLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:MTH00196 243 RLPILAITLaltfLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYV 301
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 11-288 1.22e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 85.45  E-value: 1.22e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAI-IPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDI----SQLT 85
Cdd:MTH00199 109 GSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILT 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  86 LPESTMMLTFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLApITLLLMTINSLDQkTLMALGLLSALLGGWLGL 165
Cdd:MTH00199 189 GDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIG-VFSILVQIGPVTN-VVLICAVLSIIYGAIGAL 266

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 166 NQTQTRKIMAFSSIAHMGWLFMALTINPN----ITLITLLMYLLLTTAVFSALIS---TSSKTLTDLGISQPQvPTLLAI 238
Cdd:MTH00199 267 NQTKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSICSFSIILSlklTKGLIVEVSGLSRKN-PVIALT 345

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 657941433 239 SMLALMSLGGLPPLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFY 288
Cdd:MTH00199 346 LALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYY 395
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
11-289 6.13e-18

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 83.33  E-value: 6.13e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAIIPIIS-KQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQL----- 84
Cdd:PRK05777 115 GMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIakala 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  85 TLPESTMMLTFALAM-------KLGLAPLHFWLPEVLQGSTLSTALIISTWQKLAPITLLL----MTINSLD---QKTLM 150
Cdd:PRK05777 195 DGSGNSLLLLFGLVFllvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvVAFGGLSedwQQVLA 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 151 ALGLLSALLGGWLGLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLIT----LLMYLLLTTAVFSALISTSSK-----T 221
Cdd:PRK05777 275 IIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAvlfyLLAYLFMTLGAFGVISLLRRKggeaeS 354

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 657941433 222 LTDL-GISQ--PqvptLLAISMLALM-SLGGLPPLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:PRK05777 355 ISDFaGLSKrsP----LLAAVMTIFMlSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYL 422
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 25-282 7.42e-11

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 62.09  E-value: 7.42e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  25 WAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQLTLPESTM----------MLT 94
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELdpglllaafaLLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  95 FALAMKLGLAPLHFWLPEVL-QGSTLSTALIISTWQKLAPITLLLMTINSLDQKTLMALGLLSALLGG-------WLGLN 166
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVYAILRVLTLLFGADPALFLGTLLLVLGLltmlvgaLGALA 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 167 QTQTRKIMAFSSIAHMGWLFMALTINpNITLITLLMYLLLTTAVFSALI---------STSSKTLTDLGISQPQVPTLLA 237
Cdd:COG0651  293 QRDLKRLLAYSSVSQIGYILLGLGLG-TPLGLAGALFHLLNHALAKALLflaagaierATGTRDLDKLGGLGKRMPLTAA 371

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 657941433 238 ISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLTSTIMALSTL 282
Cdd:COG0651  372 AFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSL 416
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 11-262 9.73e-10

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 59.10  E-value: 9.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  11 GTTITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRAT---------EAATKYFLTQATASALILFSSTLNAWKTGQ--- 78
Cdd:MTH00198 200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegm 279

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  79 -WDISQLTLPESTMML----------TFALAMKLGLAPLHFWLPEVLQGSTLSTALIISTWQKLapITLLLMTINSLDQK 147
Cdd:MTH00198 280 lGTILSATLETTNIELrqgslgylfiTVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSK 357

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 148 TLMALGLLSALLGGWLGLNQTQTRKIMAFSSIAHMGWLFMALTINP----NITLITLLMYLLLTTAVFSAL--------I 215
Cdd:MTH00198 358 LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTyeslQASWTYAVTYLVSALASFTVIctleefgtR 437

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 657941433 216 STSS-------------KTLTDLGI---SQPQVPTLLAISMLalmSLGGLPPLTGFLPKWLIL 262
Cdd:MTH00198 438 TPTSrqrdgsfgnynlvRRLVDLTIlsrGQPYIAFSLAIVFL---SLAGIPPLLGFLGKWFIL 497
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
45-267 8.59e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 53.13  E-value: 8.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  45 PRATEAATKYFLTQATASALILFSSTL----NAWKTGQWDISQLTLPESTMMLTFAL-------AMKLGLAPLHFWLPEV 113
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSLlyglSGGSTQLSAIALALITSPSLGLALALvfviagiAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 114 LQGSTLSTALIISTWQKLA----PITLLLMTINSLDQKTLMALGLLSALLGGW---LGLNQTQTRKIMAFSSIAHMGWLF 186
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEQWKLLFTALAILSMVLgnvVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 187 MALTINPNITLITLLMYLLLTTAV----FSALISTSSKTLTD-----LGISQPQVPTLLAISmLALMSLGGLPPLTGFLP 257
Cdd:PRK02504 317 IGLVAGTEAGYASMVFYLLAYLFMnlgaFACVILFSLRTGTDqisdyAGLYQKDPLLTLGLS-LCLLSLGGIPPLAGFFG 395

                        250       260
                 ....*....|....*....|...
gi 657941433 258 K-------------WLILTELIT 267
Cdd:PRK02504 396 KiylfwagwqaglyLLVLVGLVT 418
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 29-277 6.96e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.38  E-value: 6.96e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  29 EMNTLA---IIPIISKqhhpRATEAATKYFLTQATASALILFSSTLNAWKTGQWDIS-------QLTLPESTMMLTFALA 98
Cdd:PRK08668 128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIVFLFLL 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  99 ----MKLGLAPLHFWLPE-----------VLQGS---------TLSTALIISTwqKLAPITLLLMTINSLDQkTLMALGL 154
Cdd:PRK08668 204 afgvAKAGIFPLHVWAPDayseapqsfsaVLSGQlsklgaygfLLVLYVLPGT--KLFSEFGTYRGVPLFNY-ILAWLGN 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 155 LSALLGGWLGLNQTQTRKIMAFSSIAHMGWLFMALTINPNItLITLLMYLLLTTAVFSALI---------STSSKTLTDL 225
Cdd:PRK08668 281 ISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSL-GFAGGLFHVFNHALFKGLFflifaaviyRTGTTKISEM 359

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 657941433 226 GISQPQVPTLLAISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLTSTIM 277
Cdd:PRK08668 360 GGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 43-289 3.61e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 48.04  E-value: 3.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  43 HHPRATEAATKYFLTQATASALILFS--------STLN----AWKTGQWDISQLTLPESTMMLTFALAM---------KL 101
Cdd:PRK12667 158 DRGDAVEAAIKYALIGAVGTTLYFLAlaflyatfGTLNmadlSAKIRGLSFPLTGGLAGNPPLALGVALalalwaftiKA 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 102 GLAPLHFWLPEVLQ------GSTLS---------------------TALIISTWQKLAPITLLLMTINSLdqktlmalgl 154
Cdd:PRK12667 238 AIFPNHFWLPDAHPaapspvSAMLSglvvnvgayaiirflytifgiSPSLIDFRAALSPILIILGAVSAI---------- 307

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 155 lsalLGGWLGLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALISTS--------SKTLTDLG 226
Cdd:PRK12667 308 ----IGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASgvfihaagTRDIDELA 383

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 657941433 227 ISQPQVPTLLAISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:PRK12667 384 GLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYF 446
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-282 1.91e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 45.70  E-value: 1.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433   50 AATKYFLTQATASALILFSSTLNAWKTGQW----DISQLTLPESTMMLTF-----ALAMKLGLAPLHFWLPEV-LQGSTL 119
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVQTWLFlaffiAFAVKVPLFPLHTWLPDAhVEAPTA 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  120 STALIISTWQKLAPITLLLMTINSLDQKTLMALGLLSALLGGWLGLN------QTQTRKIMAFSSIAHMGWLFMALTINP 193
Cdd:TIGR01972 237 GSVILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLAALGVIAIIYGalialaQTDIKRLIAYSSISHMGFVLLGIFSFN 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  194 NITLITLLMYLLLTTAVFSALIS--------TSSKTLTDLGISQPQVPTLLAISMLALMSLGGLPPLTGFLPKWLILTEL 265
Cdd:TIGR01972 317 ELGISGAVFQMISHGLITAALFLlvgvlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGS 396

                         250
                  ....*....|....*..
gi 657941433  266 ITNNlPLTSTIMALSTL 282
Cdd:TIGR01972 397 FKVN-PVVAFLAALGIV 412
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 28-289 2.04e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 45.64  E-value: 2.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  28 LEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQWDISQLT--LPESTMMLT------FALAM 99
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 100 KLGLAPLHFWLPEVLQG-STLSTALIISTWQKLA--PITLLLMTINSLDQKTLMALGLLSALLGG-------WLGLNQTQ 169
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYFTVFGGDFRFALGLGWLLAVLALlsmlvgsLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 170 TRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALI--------STSSKTLTDLGISQPQVP-TLLAISM 240
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFlaagaievTYGTRRLSELSGLGRRMPlTAAAFAV 374

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 657941433 241 LALmSLGGLPPLTGFLPKWLILTELITNNLPLTSTIMALSTLPSLFFYL 289
Cdd:PRK08375 375 ASL-SLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFL 422
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 33-262 3.59e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 44.69  E-value: 3.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  33 LAIIP---IISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTGQW-----DISQLTLPESTMMLTF-----ALAM 99
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTAQLLLFlaffiAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 100 KLGLAPLHFWLPEVLQGSTLSTALIIS---------------------TWQKLAPITLLLMTINSLdqktlmalgllsal 158
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAPTAGSVLLAgvllkmggygllrfalplfpeASAYFAPLLAALGVIGII-------------- 287

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 159 LGGWLGLNQTQTRKIMAFSSIAHMGWLFMAL-TINPnitlitllmyLLLTTAVF----SALIS-------------TSSK 220
Cdd:COG1008  288 YGALVALAQTDLKRLIAYSSVSHMGFVLLGIfALNP----------LGLQGAVLqmvsHGLITaalfllvgvlydrTHTR 357

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 657941433 221 TLTDLGISQPQVPTLLAISMLALMSLGGLPPLTGFLPKWLIL 262
Cdd:COG1008  358 DIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL 399
ndhB CHL00049
NADH dehydrogenase subunit 2
 46-258 6.38e-04

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 41.14  E-value: 6.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  46 RATEAATKYFLTQATASALILFS-STLNAWKTGQWDISQLT--LPESTM-----------MLTFALAMKLGLAPLHFWLP 111
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELQEIVngLINTQMynspgisialiFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 112 EVLQGSTLSTALIISTWQKLAPITLLLMTIN----SLDQKTLMALGLLSALLGGW---LGLNQTQTRKIMAFSSIAHMGW 184
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALATRIFDipfyFSSNEWHLLLEILAILSMILgnlIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 185 LFMAL-TINPNI----TLITLLMYLLLTTAVFSALISTSSKTLTD-------LGISQPqvptLLAISM-LALMSLGGLPP 251
Cdd:CHL00049 319 VIIGIiVGDSNDgyasMITYMLFYIFMNLGTFACIVLFGLRTGTDnirdyagLYTKDP----FLALSLaLCLLSLGGIPP 394


                 ....*..
gi 657941433 252 LTGFLPK 258
Cdd:CHL00049 395 LAGFFGK 401
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
33-188 9.97e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 40.45  E-value: 9.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  33 LAIIPI---ISKQHHPRATEAATKYFLTQATASALILFSSTLNAWKTG--QWDISQL---TLPESTMMLTFA-----LAM 99
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGI 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 100 KLGLAPLHFWLPEV-LQGSTLSTALIISTWQKLAPITLLLMTINSLDQK------TLMALGLLSALLGGWLGLNQTQTRK 172
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAwvylapWLATWAVVSVLYGASCAIAQKDMKK 297

                        170
                 ....*....|....*.
gi 657941433 173 IMAFSSIAHMGWLFMA 188
Cdd:PRK06473 298 MVAYSSIGHMGYILLA 313
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 28-261 3.09e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 38.92  E-value: 3.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  28 LEMNTLAIIPIISKQHH-PRATEAATKYFLTQATASALILFS--------STLN-AWKTGQWDISQLTLPESTMMLTFA- 96
Cdd:PRK08376 150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGiallygqyGTLNmAYLAVKMSENPTVVAKIALALFIAg 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  97 LAMKLGLAPLHFWLPEVLQG--STLSTALIISTWQKLAPITLLLMTI--NSLDQKTL----MALGLLSALLGGWLGLNQT 168
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIygPAINLATVgwviIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 169 QTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTT-----------AVFSALIS---------TSSKTLTDLGIS 228
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLGLGVGLAALGDPAMASYGEIAlaggiyhivnhALYKALLFltagaviyeTGTRNLNELGGL 389

                        250       260       270
                 ....*....|....*....|....*....|...
gi 657941433 229 QPQVPTLLAISMLALMSLGGLPPLTGFLPKWLI 261
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 171-269 3.18e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.95  E-value: 3.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 171 RKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAVFSALISTS---------SKTLTDLGISQPQVPTLLAISML 241
Cdd:PRK12662 304 KRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSgsisyhfgtTKLEDCLNLWKSMPKITLAFVLL 383

                         90       100
                 ....*....|....*....|....*...
gi 657941433 242 ALmSLGGLPPLTGFLPKWLILTELITNN 269
Cdd:PRK12662 384 SL-SLIGMPPTSGFVAKWYILDAFIKSN 410
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 23-263 7.90e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 37.60  E-value: 7.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  23 LAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTL----------NAWKTGQWD--ISQLTLPEST 90
Cdd:PRK06458 132 LMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTILvyanaatvmgDGEMAILWTelLKHASLLDPT 211

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433  91 MM-LTFALAM-----KLGLAPLHFWLPE-----------VLQGSTLSTAL---------IISTWQKLAPITLLL-MTINS 143
Cdd:PRK06458 212 LMkLAFVFLLigfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyavlryyilIDAAIGSDFPGRLLLiFGLLS 291

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657941433 144 LdqktlmalgllsaLLGGWLGLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTT--------AVFSALI 215
Cdd:PRK06458 292 V-------------LVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSltksaiffASGNVLQ 358

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 657941433 216 STSSKTLTDLGISQPQVPTLLAISMLALMSLGGLPPLTGFLPKWLILT 263
Cdd:PRK06458 359 KYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILT 406
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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