NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|601117213|gb|AHN67537|]
View 

riboflavin kinase/FMN adenylyltransferase [Treponema pallidum subsp. pallidum str. Sea 81-4]

Protein Classification

FAD synthetase family protein( domain architecture ID 10114506)

FAD synthetase family protein containing only the N-terminal domain of a bifunctional enzyme such as Rhodococcus opacus putative bifunctional riboflavin kinase/FMN adenylyltransferase; may catalyze the the adenylation of FMN to FAD, but not the phosphorylation of riboflavin

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
FAD_synthetase_N cd02064
FAD synthetase, N-terminal domain of the bifunctional enzyme; FAD synthetase_N. N-terminal ...
21-203 3.53e-52

FAD synthetase, N-terminal domain of the bifunctional enzyme; FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.


:

Pssm-ID: 185679 [Multi-domain]  Cd Length: 180  Bit Score: 168.10  E-value: 3.53e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213  21 AAISVGGFDGPHRGHAFLFDKVFAAACApvadRARCTGLITFTHPPRKH-KTSSYEGDLSTLRLRLRYFRARGFDFVVLI 99
Cdd:cd02064    1 TVVAIGNFDGVHLGHQALIKTLKKIARE----RGLPSAVLTFDPHPREVfLPDKAPPRLTTLEEKLELLESLGVDYLLVL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213 100 DFSKDFARIPGGVFFNTLLRAVRVCYLAVGVDFRCGHGLDTGVRELRRLGDAHSFVCDAVGHYTLEGVRVSSSAVRRAVR 179
Cdd:cd02064   77 PFDKEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALA 156
                        170       180
                 ....*....|....*....|....
gi 601117213 180 CADFESARRLLGRAFSLDGEVIPW 203
Cdd:cd02064  157 EGDVELANELLGRPYSIEGRVVHG 180
 
Name Accession Description Interval E-value
FAD_synthetase_N cd02064
FAD synthetase, N-terminal domain of the bifunctional enzyme; FAD synthetase_N. N-terminal ...
21-203 3.53e-52

FAD synthetase, N-terminal domain of the bifunctional enzyme; FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.


Pssm-ID: 185679 [Multi-domain]  Cd Length: 180  Bit Score: 168.10  E-value: 3.53e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213  21 AAISVGGFDGPHRGHAFLFDKVFAAACApvadRARCTGLITFTHPPRKH-KTSSYEGDLSTLRLRLRYFRARGFDFVVLI 99
Cdd:cd02064    1 TVVAIGNFDGVHLGHQALIKTLKKIARE----RGLPSAVLTFDPHPREVfLPDKAPPRLTTLEEKLELLESLGVDYLLVL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213 100 DFSKDFARIPGGVFFNTLLRAVRVCYLAVGVDFRCGHGLDTGVRELRRLGDAHSFVCDAVGHYTLEGVRVSSSAVRRAVR 179
Cdd:cd02064   77 PFDKEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALA 156
                        170       180
                 ....*....|....*....|....
gi 601117213 180 CADFESARRLLGRAFSLDGEVIPW 203
Cdd:cd02064  157 EGDVELANELLGRPYSIEGRVVHG 180
FAD_syn pfam06574
FAD synthetase; This family corresponds to the N terminal domain of the bifunctional enzyme ...
14-173 3.33e-48

FAD synthetase; This family corresponds to the N terminal domain of the bifunctional enzyme riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin 5'-phospho transferase and ATP:FMN-adenylyltransferase activity. They catalyze the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD. This domain is thought to have the flavin mononucleotide (FMN) adenylyltransferase activity.


Pssm-ID: 429011 [Multi-domain]  Cd Length: 158  Bit Score: 157.34  E-value: 3.33e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213   14 CIACDRGAAISVGGFDGPHRGHAFLFDKVFAAAcapvADRARCTGLITFTHPPRKH-KTSSYEGDLSTLRLRLRYFRARG 92
Cdd:pfam06574   1 LPEDLEGCVVTIGNFDGVHLGHQALIAKAKEIA----RELGLPSVVVTFEPHPREVfNPDSAPFRLTTLEEKIELLAELG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213   93 FDFVVLIDFSKDFARIPGGVFFNTLLR-AVRVCYLAVGVDFRCGHGLDTGVRELRRLGDAHSFVCDAVGHYTLEGVRVSS 171
Cdd:pfam06574  77 VDYLLVLPFTKEFASLSAEEFIENVLVdGLNVKHVVVGFDFRFGKGRKGDVELLKELGAKLGFEVTIVPPVELDGEKISS 156

                  ..
gi 601117213  172 SA 173
Cdd:pfam06574 157 TR 158
RibF COG0196
FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway ...
1-249 5.72e-40

FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway/BioSystem: Riboflavin/FAD biosynthesis


Pssm-ID: 439966 [Multi-domain]  Cd Length: 310  Bit Score: 140.56  E-value: 5.72e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213   1 MRIFR-WSQLQEGaciacDRGAAISVGGFDGPHRGHAFLFDKVFAAAcapvADRARCTGLITFTHPPRK-HKTSSYEGDL 78
Cdd:COG0196    1 MKIIRgLSELPAD-----LRGTVVTIGNFDGVHLGHQALIARLVELA----RELGLPSVVLTFEPHPREvFRPDKAPKLL 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213  79 STLRLRLRYFRARGFDFVVLIDFSKDFARIPGGVFF-NTLLRAVRVCYLAVGVDFRCGHGLDTGVRELRRLGDAHSFVCD 157
Cdd:COG0196   72 TTLEEKLELLEELGVDYVLVLPFTREFAALSPEEFVeEILVDKLGAKHVVVGDDFRFGKGRAGDVELLRELGEEYGFEVE 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213 158 AVGHYTLEGVRVSSSAVRRAVRCADFESARRLLGRAFSLDGEVIPWQQSGgcaRTL-------CAERGRVsqtLPPEGEY 230
Cdd:COG0196  152 VVPPVTIDGERVSSTRIREALAEGDVEEAAELLGRPYSISGRVVHGDKRG---RTLgfptanlALPEEKL---LPADGVY 225
                        250
                 ....*....|....*....
gi 601117213 231 AVRlVQGSGVGLRAQLSVG 249
Cdd:COG0196  226 AVR-VRIDGRRYPGVANIG 243
PRK05627 PRK05627
bifunctional riboflavin kinase/FAD synthetase;
18-235 7.60e-35

bifunctional riboflavin kinase/FAD synthetase;


Pssm-ID: 235536 [Multi-domain]  Cd Length: 305  Bit Score: 127.19  E-value: 7.60e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213  18 DRGAAISVGGFDGPHRGHAFLFDKVFAAAcapvadRARC--TGLITFTHPPRKHKTSSYEGD-LSTLRLRLRYFRARGFD 94
Cdd:PRK05627  12 PPDCVLTIGNFDGVHRGHQALLARAREIA------RERGlpSVVMTFEPHPREVFAPDKAPArLTPLRDKAELLAELGVD 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213  95 FVVLIDFSKDFARIPGGVFFNTLL-RAVRVCYLAVGVDFRCGHGLDTGVRELRRLGDAHSFVCDAVGHYTLEGVRVSSSA 173
Cdd:PRK05627  86 YVLVLPFDEEFAKLSAEEFIEDLLvKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTA 165
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 601117213 174 VRRAVRCADFESARRLLGRAFSLDGEVIPWQQSGgcaRT-------LCAERgrvsQTLPPEGEYAVRLV 235
Cdd:PRK05627 166 IRQALAEGDLELANKLLGRPYSISGRVVHGQKLG---RTlgfptanLPLPD----RVLPADGVYAVRVK 227
ribF TIGR00083
riboflavin kinase/FMN adenylyltransferase; multifunctional enzyme: riboflavin kinase (EC 2.7.1. ...
22-232 4.31e-26

riboflavin kinase/FMN adenylyltransferase; multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase). [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD]


Pssm-ID: 272898 [Multi-domain]  Cd Length: 288  Bit Score: 103.68  E-value: 4.31e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213   22 AISVGGFDGPHRGHAFLFDKVFAAACA---PVAdrarctgLITFTHPPRKHKTSSYEGDLSTLRLRLRYFRARGFDFVVL 98
Cdd:TIGR00083   1 SLAIGYFDGLHLGHQALLQELKQIAEEkglPPA-------VLLFEPHPSEQFNWLTAPALTPLEDKARQLQIKGVEQLLV 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213   99 IDFSKDFARIPGGVFFNTLL-RAVRVCYLAVGVDFRCGHGLDTGVRELRRLGDAHSFvCDAVGHYTLEGVRVSSSAVRRA 177
Cdd:TIGR00083  74 VVFDEEFANLSALQFIDQLIvKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIF-CVIVKQLFCQDIRISSSAIRQA 152
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 601117213  178 VRCADFESARRLLGRAFSLDGEVIPWQQSGgcaRTLCAERGRV---SQTLPPEGEYAV 232
Cdd:TIGR00083 153 LKNGDLELANKLLGRPYFICGTVIHGQKLG---RTLGFPTANIklkNQVLPLKGGYYV 207
 
Name Accession Description Interval E-value
FAD_synthetase_N cd02064
FAD synthetase, N-terminal domain of the bifunctional enzyme; FAD synthetase_N. N-terminal ...
21-203 3.53e-52

FAD synthetase, N-terminal domain of the bifunctional enzyme; FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.


Pssm-ID: 185679 [Multi-domain]  Cd Length: 180  Bit Score: 168.10  E-value: 3.53e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213  21 AAISVGGFDGPHRGHAFLFDKVFAAACApvadRARCTGLITFTHPPRKH-KTSSYEGDLSTLRLRLRYFRARGFDFVVLI 99
Cdd:cd02064    1 TVVAIGNFDGVHLGHQALIKTLKKIARE----RGLPSAVLTFDPHPREVfLPDKAPPRLTTLEEKLELLESLGVDYLLVL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213 100 DFSKDFARIPGGVFFNTLLRAVRVCYLAVGVDFRCGHGLDTGVRELRRLGDAHSFVCDAVGHYTLEGVRVSSSAVRRAVR 179
Cdd:cd02064   77 PFDKEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALA 156
                        170       180
                 ....*....|....*....|....
gi 601117213 180 CADFESARRLLGRAFSLDGEVIPW 203
Cdd:cd02064  157 EGDVELANELLGRPYSIEGRVVHG 180
FAD_syn pfam06574
FAD synthetase; This family corresponds to the N terminal domain of the bifunctional enzyme ...
14-173 3.33e-48

FAD synthetase; This family corresponds to the N terminal domain of the bifunctional enzyme riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin 5'-phospho transferase and ATP:FMN-adenylyltransferase activity. They catalyze the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD. This domain is thought to have the flavin mononucleotide (FMN) adenylyltransferase activity.


Pssm-ID: 429011 [Multi-domain]  Cd Length: 158  Bit Score: 157.34  E-value: 3.33e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213   14 CIACDRGAAISVGGFDGPHRGHAFLFDKVFAAAcapvADRARCTGLITFTHPPRKH-KTSSYEGDLSTLRLRLRYFRARG 92
Cdd:pfam06574   1 LPEDLEGCVVTIGNFDGVHLGHQALIAKAKEIA----RELGLPSVVVTFEPHPREVfNPDSAPFRLTTLEEKIELLAELG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213   93 FDFVVLIDFSKDFARIPGGVFFNTLLR-AVRVCYLAVGVDFRCGHGLDTGVRELRRLGDAHSFVCDAVGHYTLEGVRVSS 171
Cdd:pfam06574  77 VDYLLVLPFTKEFASLSAEEFIENVLVdGLNVKHVVVGFDFRFGKGRKGDVELLKELGAKLGFEVTIVPPVELDGEKISS 156

                  ..
gi 601117213  172 SA 173
Cdd:pfam06574 157 TR 158
RibF COG0196
FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway ...
1-249 5.72e-40

FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway/BioSystem: Riboflavin/FAD biosynthesis


Pssm-ID: 439966 [Multi-domain]  Cd Length: 310  Bit Score: 140.56  E-value: 5.72e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213   1 MRIFR-WSQLQEGaciacDRGAAISVGGFDGPHRGHAFLFDKVFAAAcapvADRARCTGLITFTHPPRK-HKTSSYEGDL 78
Cdd:COG0196    1 MKIIRgLSELPAD-----LRGTVVTIGNFDGVHLGHQALIARLVELA----RELGLPSVVLTFEPHPREvFRPDKAPKLL 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213  79 STLRLRLRYFRARGFDFVVLIDFSKDFARIPGGVFF-NTLLRAVRVCYLAVGVDFRCGHGLDTGVRELRRLGDAHSFVCD 157
Cdd:COG0196   72 TTLEEKLELLEELGVDYVLVLPFTREFAALSPEEFVeEILVDKLGAKHVVVGDDFRFGKGRAGDVELLRELGEEYGFEVE 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213 158 AVGHYTLEGVRVSSSAVRRAVRCADFESARRLLGRAFSLDGEVIPWQQSGgcaRTL-------CAERGRVsqtLPPEGEY 230
Cdd:COG0196  152 VVPPVTIDGERVSSTRIREALAEGDVEEAAELLGRPYSISGRVVHGDKRG---RTLgfptanlALPEEKL---LPADGVY 225
                        250
                 ....*....|....*....
gi 601117213 231 AVRlVQGSGVGLRAQLSVG 249
Cdd:COG0196  226 AVR-VRIDGRRYPGVANIG 243
PRK05627 PRK05627
bifunctional riboflavin kinase/FAD synthetase;
18-235 7.60e-35

bifunctional riboflavin kinase/FAD synthetase;


Pssm-ID: 235536 [Multi-domain]  Cd Length: 305  Bit Score: 127.19  E-value: 7.60e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213  18 DRGAAISVGGFDGPHRGHAFLFDKVFAAAcapvadRARC--TGLITFTHPPRKHKTSSYEGD-LSTLRLRLRYFRARGFD 94
Cdd:PRK05627  12 PPDCVLTIGNFDGVHRGHQALLARAREIA------RERGlpSVVMTFEPHPREVFAPDKAPArLTPLRDKAELLAELGVD 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213  95 FVVLIDFSKDFARIPGGVFFNTLL-RAVRVCYLAVGVDFRCGHGLDTGVRELRRLGDAHSFVCDAVGHYTLEGVRVSSSA 173
Cdd:PRK05627  86 YVLVLPFDEEFAKLSAEEFIEDLLvKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTA 165
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 601117213 174 VRRAVRCADFESARRLLGRAFSLDGEVIPWQQSGgcaRT-------LCAERgrvsQTLPPEGEYAVRLV 235
Cdd:PRK05627 166 IRQALAEGDLELANKLLGRPYSISGRVVHGQKLG---RTlgfptanLPLPD----RVLPADGVYAVRVK 227
ribF TIGR00083
riboflavin kinase/FMN adenylyltransferase; multifunctional enzyme: riboflavin kinase (EC 2.7.1. ...
22-232 4.31e-26

riboflavin kinase/FMN adenylyltransferase; multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase). [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD]


Pssm-ID: 272898 [Multi-domain]  Cd Length: 288  Bit Score: 103.68  E-value: 4.31e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213   22 AISVGGFDGPHRGHAFLFDKVFAAACA---PVAdrarctgLITFTHPPRKHKTSSYEGDLSTLRLRLRYFRARGFDFVVL 98
Cdd:TIGR00083   1 SLAIGYFDGLHLGHQALLQELKQIAEEkglPPA-------VLLFEPHPSEQFNWLTAPALTPLEDKARQLQIKGVEQLLV 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213   99 IDFSKDFARIPGGVFFNTLL-RAVRVCYLAVGVDFRCGHGLDTGVRELRRLGDAHSFvCDAVGHYTLEGVRVSSSAVRRA 177
Cdd:TIGR00083  74 VVFDEEFANLSALQFIDQLIvKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIF-CVIVKQLFCQDIRISSSAIRQA 152
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 601117213  178 VRCADFESARRLLGRAFSLDGEVIPWQQSGgcaRTLCAERGRV---SQTLPPEGEYAV 232
Cdd:TIGR00083 153 LKNGDLELANKLLGRPYFICGTVIHGQKLG---RTLGFPTANIklkNQVLPLKGGYYV 207
cytidylyltransferase_like cd02039
Cytidylyltransferase-like domain; Cytidylyltransferase-like domain. Many of these proteins are ...
22-177 4.48e-05

Cytidylyltransferase-like domain; Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.


Pssm-ID: 185678 [Multi-domain]  Cd Length: 143  Bit Score: 42.43  E-value: 4.48e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213  22 AISVGGFDGPHRGHAFLFDKVFAAACAPVAdrarctgLITFTHPPRKHKTssyeGDLSTLRLRLRYFRA--RGFDFVVLI 99
Cdd:cd02039    2 GIIIGRFEPFHLGHLKLIKEALEEALDEVI-------IIIVSNPPKKKRN----KDPFSLHERVEMLKEilKDRLKVVPV 70
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 601117213 100 DFSkDFARIPGGVFFNTLLRAVRVCYLAVGVDFRCGhgldtGVRELRRLGDAHSFVCDAVGHYTLE-GVRVSSSAVRRA 177
Cdd:cd02039   71 DFP-EVKILLAVVFILKILLKVGPDKVVVGEDFAFG-----KNASYNKDLKELFLDIEIVEVPRVRdGKKISSTLIREL 143
PRK07143 PRK07143
hypothetical protein; Provisional
23-136 1.95e-04

hypothetical protein; Provisional


Pssm-ID: 235946 [Multi-domain]  Cd Length: 279  Bit Score: 41.91  E-value: 1.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 601117213  23 ISVGGFDGPHRGHAFLFDKVFAAACAPVadrarctgLITFTHPPRKHKtsSYEGDLSTLRLRLRYFRARGFDFVVLIDFS 102
Cdd:PRK07143  19 FVLGGFESFHLGHLELFKKAKESNDEIV--------IVIFKNPENLPK--NTNKKFSDLNSRLQTLANLGFKNIILLDFN 88
                         90       100       110
                 ....*....|....*....|....*....|....
gi 601117213 103 KDFARIPGGVFFNTLLRaVRVCYLAVGVDFRCGH 136
Cdd:PRK07143  89 EELQNLSGNDFIEKLTK-NQVSFFVVGKDFRFGK 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH