NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|539334372|gb|AGV00548|]
View 

octopine dehydrogenase, partial [Sepioteuthis cf. lessoniana DON020]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
GpsA super family cl33811
Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate ...
 54-95 8.15e-04

Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate dehydrogenase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


The actual alignment was detected with superfamily member COG0240:

Pssm-ID: 440010 [Multi-domain]  Cd Length: 327  Bit Score: 40.40  E-value: 8.15e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 539334372  54 ITNDPSKAVPGCNLIIFTVPAFAHEGYFRAIAPYLEPNTVIV 95
Cdd:COG0240   60 ATSDLEEALAGADLVLLAVPSQALREVLEQLAPLLPPGAPVV 101
 
Name Accession Description Interval E-value
GpsA COG0240
Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate ...
 54-95 8.15e-04

Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate dehydrogenase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 440010 [Multi-domain]  Cd Length: 327  Bit Score: 40.40  E-value: 8.15e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 539334372  54 ITNDPSKAVPGCNLIIFTVPAFAHEGYFRAIAPYLEPNTVIV 95
Cdd:COG0240   60 ATSDLEEALAGADLVLLAVPSQALREVLEQLAPLLPPGAPVV 101
gpsA PRK00094
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase;
54-95 2.62e-03

NAD(P)H-dependent glycerol-3-phosphate dehydrogenase;


Pssm-ID: 234629 [Multi-domain]  Cd Length: 325  Bit Score: 38.51  E-value: 2.62e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 539334372  54 ITNDPSKAVPGCNLIIFTVPAFAHEGYFRAIAPYLEPNTVIV 95
Cdd:PRK00094  61 ATTDLAEALADADLILVAVPSQALREVLKQLKPLLPPDAPIV 102
 
Name Accession Description Interval E-value
GpsA COG0240
Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate ...
 54-95 8.15e-04

Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate dehydrogenase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 440010 [Multi-domain]  Cd Length: 327  Bit Score: 40.40  E-value: 8.15e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 539334372  54 ITNDPSKAVPGCNLIIFTVPAFAHEGYFRAIAPYLEPNTVIV 95
Cdd:COG0240   60 ATSDLEEALAGADLVLLAVPSQALREVLEQLAPLLPPGAPVV 101
TyrA COG0287
Prephenate dehydrogenase [Amino acid transport and metabolism]; Prephenate dehydrogenase is ...
 54-96 1.63e-03

Prephenate dehydrogenase [Amino acid transport and metabolism]; Prephenate dehydrogenase is part of the Pathway/BioSystem: Aromatic amino acid biosynthesis


Pssm-ID: 440056 [Multi-domain]  Cd Length: 278  Bit Score: 39.34  E-value: 1.63e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 539334372  54 ITNDPSKAVPGCNLIIFTVPAFAHEGYFRAIAPYLEPNTVI--VG 96
Cdd:COG0287   51 AATDLEEAVADADLVVLAVPVGATIEVLAELAPHLKPGAIVtdVG 95
gpsA PRK00094
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase;
54-95 2.62e-03

NAD(P)H-dependent glycerol-3-phosphate dehydrogenase;


Pssm-ID: 234629 [Multi-domain]  Cd Length: 325  Bit Score: 38.51  E-value: 2.62e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 539334372  54 ITNDPSKAVPGCNLIIFTVPAFAHEGYFRAIAPYLEPNTVIV 95
Cdd:PRK00094  61 ATTDLAEALADADLILVAVPSQALREVLKQLKPLLPPDAPIV 102
PanE COG1893
Ketopantoate reductase [Coenzyme transport and metabolism]; Ketopantoate reductase is part of ...
 54-95 5.64e-03

Ketopantoate reductase [Coenzyme transport and metabolism]; Ketopantoate reductase is part of the Pathway/BioSystem: Pantothenate/CoA biosynthesis


Pssm-ID: 441497 [Multi-domain]  Cd Length: 305  Bit Score: 37.53  E-value: 5.64e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 539334372  54 ITNDPSkAVPGCNLIIFTVPAFAHEGYFRAIAPYLEPNTVIV 95
Cdd:COG1893   59 AVTDPE-ELGPADLVLVAVKAYDLEAAAEALAPLLGPDTVVL 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH