NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|531992944|gb|AGT60494|]
View 

glycosyltransferase, partial [Brosmophycis marginata]

Protein Classification

glycosyltransferase family 61 protein( domain architecture ID 79050)

glycosyltransferase family 61 protein may function as a glycosyltransferase, similar to Mus musculus protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Glyco_transf_61 super family cl15705
Glycosyltransferase 61; This family represents the Glycosyltransferase Family 61. Members in ...
 47-148 1.34e-12

Glycosyltransferase 61; This family represents the Glycosyltransferase Family 61. Members in this family are further processed into a mature form. It includes O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 (POMGnT2, also known as AGO61 or EOGLT) and EGF domain-specific O-linked N-acetylglucosamine transferase (EOGT). This family also includes plant beta-1,2-xylosyltransferases.


The actual alignment was detected with superfamily member COG4421:

Pssm-ID: 472831  Cd Length: 258  Bit Score: 66.14  E-value: 1.34e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 531992944  47 VLFSR--STTRLILNEAELImALAQEFQMRVVTvsLEEQSFPSIVQVINGASMLVSMHGAQLIASLFLPRGAAVVELFpf 124
Cdd:COG4421  127 IYISRrdASRRRILNEEELE-ALLEKYGFEIVD--PEELSFAEQIALFAEAEVIVGPHGAGLTNLVFCRPGTKVIELF-- 201

                         90       100
                 ....*....|....*....|....*.
gi 531992944 125 avnPEQYTP--YKTLASLPGIDLHYV 148
Cdd:COG4421  202 ---PPGYVNpyFWLLAALLGLRYYYL 224
 
Name Accession Description Interval E-value
COG4421 COG4421
Capsular polysaccharide biosynthesis protein [Cell wall/membrane/envelope biogenesis];
47-148 1.34e-12

Capsular polysaccharide biosynthesis protein [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443536  Cd Length: 258  Bit Score: 66.14  E-value: 1.34e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 531992944  47 VLFSR--STTRLILNEAELImALAQEFQMRVVTvsLEEQSFPSIVQVINGASMLVSMHGAQLIASLFLPRGAAVVELFpf 124
Cdd:COG4421  127 IYISRrdASRRRILNEEELE-ALLEKYGFEIVD--PEELSFAEQIALFAEAEVIVGPHGAGLTNLVFCRPGTKVIELF-- 201

                         90       100
                 ....*....|....*....|....*.
gi 531992944 125 avnPEQYTP--YKTLASLPGIDLHYV 148
Cdd:COG4421  202 ---PPGYVNpyFWLLAALLGLRYYYL 224
Glyco_transf_61 pfam04577
Glycosyltransferase 61; This family represents the Glycosyltransferase Family 61. Members in ...
 39-119 1.97e-11

Glycosyltransferase 61; This family represents the Glycosyltransferase Family 61. Members in this family are further processed into a mature form. It includes O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 (POMGnT2, also known as AGO61 or EOGLT) and EGF domain-specific O-linked N-acetylglucosamine transferase (EOGT). This family also includes plant beta-1,2-xylosyltransferases.


Pssm-ID: 428020  Cd Length: 124  Bit Score: 60.02  E-value: 1.97e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 531992944   39 EKEKDEYIVLFSRSTT--RLILNEAELIMALAQEFQmrVVTVSLEEQSFPSIVQVINGASMLVSMHGAQLIASLFLPRGA 116
Cdd:pfam04577  44 SNIKPTRYVYISRGDArrRRILNEDELEAALKKEYG--FEIVDPEKLSLEEQVKLFSSAKVIVGPHGSGLTNSIFMPPGT 121


                  ...
gi 531992944  117 AVV 119
Cdd:pfam04577 122 VVV 124
 
Name Accession Description Interval E-value
COG4421 COG4421
Capsular polysaccharide biosynthesis protein [Cell wall/membrane/envelope biogenesis];
47-148 1.34e-12

Capsular polysaccharide biosynthesis protein [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443536  Cd Length: 258  Bit Score: 66.14  E-value: 1.34e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 531992944  47 VLFSR--STTRLILNEAELImALAQEFQMRVVTvsLEEQSFPSIVQVINGASMLVSMHGAQLIASLFLPRGAAVVELFpf 124
Cdd:COG4421  127 IYISRrdASRRRILNEEELE-ALLEKYGFEIVD--PEELSFAEQIALFAEAEVIVGPHGAGLTNLVFCRPGTKVIELF-- 201

                         90       100
                 ....*....|....*....|....*.
gi 531992944 125 avnPEQYTP--YKTLASLPGIDLHYV 148
Cdd:COG4421  202 ---PPGYVNpyFWLLAALLGLRYYYL 224
Glyco_transf_61 pfam04577
Glycosyltransferase 61; This family represents the Glycosyltransferase Family 61. Members in ...
 39-119 1.97e-11

Glycosyltransferase 61; This family represents the Glycosyltransferase Family 61. Members in this family are further processed into a mature form. It includes O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 (POMGnT2, also known as AGO61 or EOGLT) and EGF domain-specific O-linked N-acetylglucosamine transferase (EOGT). This family also includes plant beta-1,2-xylosyltransferases.


Pssm-ID: 428020  Cd Length: 124  Bit Score: 60.02  E-value: 1.97e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 531992944   39 EKEKDEYIVLFSRSTT--RLILNEAELIMALAQEFQmrVVTVSLEEQSFPSIVQVINGASMLVSMHGAQLIASLFLPRGA 116
Cdd:pfam04577  44 SNIKPTRYVYISRGDArrRRILNEDELEAALKKEYG--FEIVDPEKLSLEEQVKLFSSAKVIVGPHGSGLTNSIFMPPGT 121


                  ...
gi 531992944  117 AVV 119
Cdd:pfam04577 122 VVV 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH