NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|492006542|gb|AGL17862|]
View 

hypothetical protein L083_4352 [Actinoplanes sp. N902-109]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
rad23 super family cl36702
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 74-139 1.86e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


The actual alignment was detected with superfamily member TIGR00601:

Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.19  E-value: 1.86e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492006542   74 GTEHVAAPTRQPGPATvAPTPSPAASRPSAPSRLPSHA--PSSRPPSNKTSSPPPPPAGQGHSSSADA 139
Cdd:TIGR00601  80 GTGKVAPPAATPTSAP-TPTPSPPASPASGMSAAPASAveEKSPSEESATATAPESPSTSVPSSGSDA 146
 
Name Accession Description Interval E-value
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 74-139 1.86e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.19  E-value: 1.86e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492006542   74 GTEHVAAPTRQPGPATvAPTPSPAASRPSAPSRLPSHA--PSSRPPSNKTSSPPPPPAGQGHSSSADA 139
Cdd:TIGR00601  80 GTGKVAPPAATPTSAP-TPTPSPPASPASGMSAAPASAveEKSPSEESATATAPESPSTSVPSSGSDA 146
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
 84-127 6.14e-04

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 40.21  E-value: 6.14e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 492006542  84 QPGPATVAPTPSPAAS-RPSAPSRLPSHAPSSRPPSNKTSSPPPP 127
Cdd:PLN02983 155 PPPPHAMPPASPPAAQpAPSAPASSPPPTPASPPPAKAPKSSHPP 199
FAP pfam07174
Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ...
 79-129 3.06e-03

Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix.


Pssm-ID: 429334  Cd Length: 301  Bit Score: 38.37  E-value: 3.06e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 492006542   79 AAPTRQPGPATVAPTPSPAASRPSAPSRLPSHAPSSRPPSNKTSSPPPPPA 129
Cdd:pfam07174  56 APPPPPPAPAAPAPPPPPAAPNAPNAPPPPADPNAPPPPPADPNAPPPPAV 106
 
Name Accession Description Interval E-value
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 74-139 1.86e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.19  E-value: 1.86e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492006542   74 GTEHVAAPTRQPGPATvAPTPSPAASRPSAPSRLPSHA--PSSRPPSNKTSSPPPPPAGQGHSSSADA 139
Cdd:TIGR00601  80 GTGKVAPPAATPTSAP-TPTPSPPASPASGMSAAPASAveEKSPSEESATATAPESPSTSVPSSGSDA 146
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
 84-127 6.14e-04

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 40.21  E-value: 6.14e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 492006542  84 QPGPATVAPTPSPAAS-RPSAPSRLPSHAPSSRPPSNKTSSPPPP 127
Cdd:PLN02983 155 PPPPHAMPPASPPAAQpAPSAPASSPPPTPASPPPAKAPKSSHPP 199
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 69-146 6.65e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 6.65e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492006542  69 AGNHGGTEHVAAPTRQPGPATVAPTPSPAASRPSAPSRLPSHAPSSRPPSNKTSSPPPPPAGQGHSSSADAYLSSHGE 146
Cdd:PRK07764 592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 74-139 6.71e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 6.71e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492006542  74 GTEHVAAPTRQPGPATVAPTPSPAASRPSA--PSRLPSHAPSSRPPSNKTSSPPPPPAGQGHSSSADA 139
Cdd:PRK07764 665 GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAgaAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPS 732
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 64-129 1.69e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.49  E-value: 1.69e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492006542   64 AGVRLAGNHGGTEHVAAPTRQPGPATVAPTPSPAASRPSAPSRLPSHAPSSRPPSNKTSSPPPPPA 129
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAA 103
FAP pfam07174
Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ...
 79-129 3.06e-03

Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix.


Pssm-ID: 429334  Cd Length: 301  Bit Score: 38.37  E-value: 3.06e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 492006542   79 AAPTRQPGPATVAPTPSPAASRPSAPSRLPSHAPSSRPPSNKTSSPPPPPA 129
Cdd:pfam07174  56 APPPPPPAPAAPAPPPPPAAPNAPNAPPPPADPNAPPPPPADPNAPPPPAV 106
PRK12438 PRK12438
hypothetical protein; Provisional
 85-143 6.71e-03

hypothetical protein; Provisional


Pssm-ID: 171499 [Multi-domain]  Cd Length: 991  Bit Score: 37.53  E-value: 6.71e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 492006542  85 PGPATVAPTPSPAASRPSAPSRLPSHAPSSRPPSNKTSSPPPPPAGQGHSSSADAYLSS 143
Cdd:PRK12438 897 PGTGRVATAPGGDAASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPAAVAELRE 955
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH