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ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Packera hyperborealis]
RuBisCO large subunit( domain architecture ID 315)
large subunit of the ribulose bisphosphate carboxylase is part of the complex that catalyzes the primary event in carbon dioxide fixation, the carboxylation of D-ribulose 1,5-bisphosphate, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process.
List of domain hits
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Name | Accession | Description | Interval | E-value | ||||
RuBisCO_large super family | cl08232 | Ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase (Rubisco) ... |
1-184 | 2.94e-155 | ||||
Ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The actual alignment was detected with superfamily member CHL00040: Pssm-ID: 471793 Cd Length: 475 Bit Score: 437.21 E-value: 2.94e-155
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Name | Accession | Description | Interval | E-value | ||||
rbcL | CHL00040 | ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit |
1-184 | 2.94e-155 | ||||
ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit Pssm-ID: 176981 Cd Length: 475 Bit Score: 437.21 E-value: 2.94e-155
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RuBisCO_large_I | cd08212 | Ribulose bisphosphate carboxylase large chain, Form I; Ribulose bisphosphate carboxylase ... |
14-184 | 6.77e-126 | ||||
Ribulose bisphosphate carboxylase large chain, Form I; Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits. Pssm-ID: 173977 Cd Length: 450 Bit Score: 361.74 E-value: 6.77e-126
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RbcL | COG1850 | Ribulose 1,5-bisphosphate carboxylase, large subunit, or a RuBisCO-like protein [Carbohydrate ... |
15-182 | 9.55e-67 | ||||
Ribulose 1,5-bisphosphate carboxylase, large subunit, or a RuBisCO-like protein [Carbohydrate transport and metabolism]; Pssm-ID: 441455 Cd Length: 417 Bit Score: 209.64 E-value: 9.55e-67
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RuBisCO_large_N | pfam02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain; The N-terminal domain of ... |
14-135 | 2.05e-54 | ||||
Ribulose bisphosphate carboxylase large chain, N-terminal domain; The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. Pssm-ID: 426983 Cd Length: 120 Bit Score: 168.55 E-value: 2.05e-54
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Name | Accession | Description | Interval | E-value | ||||
rbcL | CHL00040 | ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit |
1-184 | 2.94e-155 | ||||
ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit Pssm-ID: 176981 Cd Length: 475 Bit Score: 437.21 E-value: 2.94e-155
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RuBisCO_large_I | cd08212 | Ribulose bisphosphate carboxylase large chain, Form I; Ribulose bisphosphate carboxylase ... |
14-184 | 6.77e-126 | ||||
Ribulose bisphosphate carboxylase large chain, Form I; Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits. Pssm-ID: 173977 Cd Length: 450 Bit Score: 361.74 E-value: 6.77e-126
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rbcL | PRK04208 | ribulose bisophosphate carboxylase; Reviewed |
3-184 | 3.93e-120 | ||||
ribulose bisophosphate carboxylase; Reviewed Pssm-ID: 179787 Cd Length: 468 Bit Score: 347.66 E-value: 3.93e-120
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RuBisCO_large_I_II_III | cd08206 | Ribulose bisphosphate carboxylase large chain, Form I,II,III; Ribulose bisphosphate ... |
25-184 | 2.14e-95 | ||||
Ribulose bisphosphate carboxylase large chain, Form I,II,III; Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues. Pssm-ID: 173971 Cd Length: 414 Bit Score: 282.59 E-value: 2.14e-95
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RbcL | COG1850 | Ribulose 1,5-bisphosphate carboxylase, large subunit, or a RuBisCO-like protein [Carbohydrate ... |
15-182 | 9.55e-67 | ||||
Ribulose 1,5-bisphosphate carboxylase, large subunit, or a RuBisCO-like protein [Carbohydrate transport and metabolism]; Pssm-ID: 441455 Cd Length: 417 Bit Score: 209.64 E-value: 9.55e-67
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RuBisCO_large | cd08148 | Ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase (Rubisco) ... |
27-184 | 2.95e-65 | ||||
Ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. Pssm-ID: 173969 Cd Length: 366 Bit Score: 204.20 E-value: 2.95e-65
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RuBisCO_large_N | pfam02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain; The N-terminal domain of ... |
14-135 | 2.05e-54 | ||||
Ribulose bisphosphate carboxylase large chain, N-terminal domain; The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. Pssm-ID: 426983 Cd Length: 120 Bit Score: 168.55 E-value: 2.05e-54
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RuBisCO_large_III | cd08213 | Ribulose bisphosphate carboxylase large chain, Form III; Ribulose bisphosphate carboxylase ... |
25-184 | 2.29e-50 | ||||
Ribulose bisphosphate carboxylase large chain, Form III; Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits. Pssm-ID: 173978 Cd Length: 412 Bit Score: 167.18 E-value: 2.29e-50
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RuBisCO_IV_RLP | cd08205 | Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV; Ribulose bisphosphate ... |
53-183 | 3.12e-24 | ||||
Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV; Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methylthio-d-ribulose 1-phosphate isomerase. Pssm-ID: 173970 Cd Length: 367 Bit Score: 97.22 E-value: 3.12e-24
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RLP_NonPhot | cd08207 | Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria; Ribulose ... |
53-182 | 1.35e-19 | ||||
Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria; Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. Pssm-ID: 173972 Cd Length: 406 Bit Score: 84.67 E-value: 1.35e-19
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RuBisCO_large | pfam00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain; The C-terminal domain of ... |
146-184 | 7.54e-19 | ||||
Ribulose bisphosphate carboxylase large chain, catalytic domain; The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. Pssm-ID: 459631 Cd Length: 292 Bit Score: 81.64 E-value: 7.54e-19
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PRK13475 | PRK13475 | ribulose-bisphosphate carboxylase; |
27-182 | 3.21e-17 | ||||
ribulose-bisphosphate carboxylase; Pssm-ID: 184072 Cd Length: 443 Bit Score: 78.23 E-value: 3.21e-17
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RuBisCO_large_II | cd08211 | Ribulose bisphosphate carboxylase large chain, Form II; Ribulose bisphosphate carboxylase ... |
27-182 | 2.19e-16 | ||||
Ribulose bisphosphate carboxylase large chain, Form II; Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits. Pssm-ID: 173976 Cd Length: 439 Bit Score: 76.00 E-value: 2.19e-16
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RLP_DK-MTP-1-P-enolase | cd08209 | 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Ribulose bisphosphate carboxylase like ... |
55-182 | 2.76e-15 | ||||
2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine. Pssm-ID: 173974 Cd Length: 391 Bit Score: 72.35 E-value: 2.76e-15
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RLP_Photo | cd08208 | Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria; Ribulose ... |
53-182 | 8.12e-10 | ||||
Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria; Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. Pssm-ID: 173973 Cd Length: 424 Bit Score: 56.83 E-value: 8.12e-10
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mtnW | PRK09549 | 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed |
55-172 | 2.99e-09 | ||||
2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed Pssm-ID: 236560 Cd Length: 407 Bit Score: 55.01 E-value: 2.99e-09
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RLP_RrRLP | cd08210 | Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP; RLP from ... |
68-183 | 1.91e-08 | ||||
Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP; RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate. Pssm-ID: 173975 Cd Length: 364 Bit Score: 52.63 E-value: 1.91e-08
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Blast search parameters | ||||
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