|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
1-447 |
0e+00 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 543.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 1 MVAEKERVLMDLKDVFEYAFDEIFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKElqkdgIFYPSATLEVIEKKRPI- 79
Cdd:COG3829 2 EELELKELEEELEAILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTE-----LIPNSPLLEVLKTGKPVt 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 80 -ELVQTTKSGEYLHVRTRPVFDDeGNLRRVISYSRDLTELYQLRQKVEEMdnqlkTYKKELRETYEHEGLIFKSLAMQKI 158
Cdd:COG3829 77 gVIQKTGGKGKTVIVTAIPIFED-GEVIGAVETFRDITELKRLERKLREE-----ELERGLSAKYTFDDIIGKSPAMKEL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 159 VDTIKKVSVVDSTVLVLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAALPTNLIESELFGYSGGSFTGANREGKKGLLE 238
Cdd:COG3829 151 LELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFE 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 239 SAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGGRELKKVDVRIVAATNRDLSEMVKQGTFRKDLYYRLNVIPIAIP 318
Cdd:COG3829 231 LADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 319 PLRERTEDILPLIYHYLQHFNKKYGRDVK-LAPGTLQMFVGYPWEGNNREIENVIERIVITVDDVV-TVEDLPLSMQEAA 396
Cdd:COG3829 311 PLRERKEDIPLLAEHFLEKFNKKYGKNIKgISPEALELLLAYDWPGNVRELENVIERAVVLSEGDViTPEHLPEYLLEEA 390
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 452102076 397 VEQS---GQSLYKMLEEVERNIILKAYKTYGSS-YKVAEFLQISQSAATRKIKKF 447
Cdd:COG3829 391 EAASaaeEGSLKEALEEVEKELIEEALEKTGGNkSKAAKALGISRSTLYRKLKKY 445
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
120-447 |
2.01e-123 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 365.44 E-value: 2.01e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 120 QLRQKVEemdnQLKTYKKELRETYEHEGLIFKSLAMQKIVDTIKKVSVVDSTVLVLGETGVGKSRLVRHLHEVSHRKNES 199
Cdd:COG2204 109 ELLAAVE----RALERRRLRRENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGP 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 200 FNEVNCAALPTNLIESELFGYSGGSFTGANREgKKGLLESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGGRELK 279
Cdd:COG2204 185 FVAVNCAAIPEELLESELFGHEKGAFTGAVAR-RIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPI 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 280 KVDVRIVAATNRDLSEMVKQGTFRKDLYYRLNVIPIAIPPLRERTEDILPLIYHYLQHFNKKYGRDVKLAPGTLQMFVGY 359
Cdd:COG2204 264 PVDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVKLSPEALEALLAY 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 360 PWEGNNREIENVIERIVITVDDVV-TVEDLPLSmqeaaveqsgqslykmLEEVERNIILKAYK-TYGSSYKVAEFLQISQ 437
Cdd:COG2204 344 DWPGNVRELENVIERAVILADGEViTAEDLPEA----------------LEEVERELIERALEeTGGNVSRAAELLGISR 407
|
330
....*....|
gi 452102076 438 SAATRKIKKF 447
Cdd:COG2204 408 RTLYRKLKKY 417
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
4-447 |
2.50e-111 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 341.11 E-value: 2.50e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 4 EKERVLMD--LKDVFEYAFDEIFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKELqkdgifypsatleviekkRPIEL 81
Cdd:COG3284 208 RREWRLRLhfLPEFLGSLSEGLLAFDEDGRIVAANRAARRLLGLADAALLGRPLEEL------------------FGLDL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 82 VQTTKSGEYLHVRTRPVFDDEGnlrrvisysrdltELYQLRQKVEEMDNQLKTYKKELRETYEHEGLIFKSLAMQKIVDT 161
Cdd:COG3284 270 EALPDGARRAPASPRPLRLRDG-------------RRLGALLRLRPARRAARAAPAGAPAPAALAALAGGDPAMRRALRR 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 162 IKKVSVVDSTVLVLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAALPTNLIESELFGYSGGSFTGANREGKKGLLESAH 241
Cdd:COG3284 337 ARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGARRKGRPGKIEQAD 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 242 KGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGGRELKKVDVRIVAATNRDLSEMVKQGTFRKDLYYRLNVIPIAIPPLR 321
Cdd:COG3284 417 GGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLR 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 322 ERtEDILPLIYHYLQHFNKKYGrDVKLAPGTLQMFVGYPWEGNNREIENVIERIVITVDDVV-TVEDLPLSMQEAAVEQS 400
Cdd:COG3284 497 ER-EDLPALIEHLLRELAAGRG-PLRLSPEALALLAAYPWPGNVRELRNVLRTALALADGGViTVEDLPDELRAELAAAA 574
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 452102076 401 GQSLYK--MLEEVERNIILKAYKTYG---SsyKVAEFLQISQSaaT--RKIKKF 447
Cdd:COG3284 575 PAAAAPltSLEEAERDAILRALRACGgnvS--AAARALGISRS--TlyRKLKRY 624
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
12-447 |
5.65e-109 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 333.78 E-value: 5.65e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 12 LKDVFEYAFDEIFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKElqkdgiFYPSA-TLEVIEKKRPIELV-QTTKSGE 89
Cdd:NF041552 136 LKHILDNIHEAVCVIDKEGIVILWNKSAEKLYGVKSEEIVGKPLEE------FFPNAlLLKVLKTKKPIENVyHSPKEGS 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 90 YLHVRTRPVFDDeGNLRRVISYSRDLTELYQLRQKVEEMDNQLKTYKKEL-RETYEHEGLIF-KSLAMQKIVDTIKKVSV 167
Cdd:NF041552 210 YVIISAVPIFIN-GEFIGVVSTDRDITEVKNLSKELEKAKEKLEYLEEEVkKISEDSFGKIIgKSKKIIKKIEIAKQVAK 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 168 VDSTVLVLGETGVGKSRLVRHLHEVSHRKNEsFNEVNCAALPTNLIESELFGYSGGSFTGANREGKKGLLESAHKGTLFL 247
Cdd:NF041552 289 TNSSVLITGESGTGKEVFARAIHQASGRKGP-FVPVNCSAIPEELFESEFFGYEEGAFTGALKKGKIGKFELANNGTLFL 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 248 DEIGEMPLEIQAKLLQVLQEKTFRPIGGRELKKVDVRIVAATNRDLSEMVKQGTFRKDLYYRLNVIPIAIPPLRERTEDI 327
Cdd:NF041552 368 DEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNVVEIELPPLRERKEDI 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 328 LPLIYHYLQHFNKKYGRDV-KLAPGTLQMFVGYPWEGNNREIENVIERIVITVDDVV-TVEDLPLSMQEAAVEQSGQS-- 403
Cdd:NF041552 448 PLLINYFLKEICKENNKEIpKIDKEVYDILQNYKWKGNIRELKNTIEHLVVLSKNGTiTKDSIPEYILESVKKKEDEEgd 527
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 452102076 404 ----LYKMLEEVERNIILKAYK-TYGSSYKVAEFLQISQSAATRKIKKF 447
Cdd:NF041552 528 ypldLNKAVEKLEIDTIKKALEmSNGNKAKAAKLLNIPRSTLYYKLKQY 576
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
148-315 |
4.60e-98 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 291.23 E-value: 4.60e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 148 LIFKSLAMQKIVDTIKKVSVVDSTVLVLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAALPTNLIESELFGYSGGSFTG 227
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 228 ANREgKKGLLESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGGRELKKVDVRIVAATNRDLSEMVKQGTFRKDLY 307
Cdd:pfam00158 81 ADSD-RKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*...
gi 452102076 308 YRLNVIPI 315
Cdd:pfam00158 160 YRLNVIPI 167
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
127-447 |
3.40e-97 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 301.34 E-value: 3.40e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 127 EMDNQLKTYKKelRETYEHEGLIFKSLAMQKIVDTIKKVSVVDSTVLVLGETGVGKSRLVRHLHEVSHRKNESFNEVNCA 206
Cdd:COG3283 187 RLGEQLQALQV--NDDSGFDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCA 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 207 ALPTNLIESELFGYSGGSFtGANREGKKGLLESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGGRELKKVDVRIV 286
Cdd:COG3283 265 ALPDDVAESELFGYAPGAF-GNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVI 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 287 AATNRDLSEMVKQGTFRKDLYYRLNVIPIAIPPLRERTEDILPLIYHYLQHFNKKYGRDV-KLAPGTLQMFVGYPWEGNN 365
Cdd:COG3283 344 CATQKDLAELVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRpRLSPDLVDFLQSYPWPGNV 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 366 REIENVIER-IVITVDDVVTVEDLPLSMQEAAVEQSGQSLYKMLEEV----ERNIILKAYKTYGSSYKVAEFLQISQSAA 440
Cdd:COG3283 424 RQLENALYRaVSLLEGDELTPEDLQLPEYAASAGLLDDLLEGSLDEIvkrfERSLLRRLYPSYPSTRKLAKRLGVSHTAI 503
|
....*..
gi 452102076 441 TRKIKKF 447
Cdd:COG3283 504 ANKLREY 510
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
114-447 |
1.99e-95 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 295.22 E-value: 1.99e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 114 DLTELYQLRQK---VEEMDNQLKTYKKELRETYEHEGLIFKSLAMQKIVDTIKKVSVVDSTVLVLGETGVGKSRLVRHLH 190
Cdd:PRK11361 108 DLDELNLIVQRalqLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIH 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 191 EVSHRKNESFNEVNCAALPTNLIESELFGYSGGSFTGANREgKKGLLESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTF 270
Cdd:PRK11361 188 YNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL-RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREF 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 271 RPIGGRELKKVDVRIVAATNRDLSEMVKQGTFRKDLYYRLNVIPIAIPPLRERTEDILPLIYHYLQHFNKKYGRDV-KLA 349
Cdd:PRK11361 267 ERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIiDID 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 350 PGTLQMFVGYPWEGNNREIENVIERIVITVD-DVVTVEDLPLSMQEAAVEQSG--------QSLYKMLEEVERNIILKAY 420
Cdd:PRK11361 347 PMAMSLLTAWSWPGNIRELSNVIERAVVMNSgPIIFSEDLPPQIRQPVCNAGEvktapvgeRNLKEEIKRVEKRIIMEVL 426
|
330 340
....*....|....*....|....*...
gi 452102076 421 -KTYGSSYKVAEFLQISQSAATRKIKKF 447
Cdd:PRK11361 427 eQQEGNRTRTALMLGISRRALMYKLQEY 454
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
105-374 |
1.74e-94 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 295.09 E-value: 1.74e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 105 LRRVISYSRDLTelyqLRQKVEEMDNQLKTYKKELRETYEHE-GLIFKSLAMQKIVDTIKKVSVVDSTVLVLGETGVGKS 183
Cdd:TIGR01817 158 LHRLVAQRRERL----IAEAVQLSKQLRDKAPEIARRRSGKEdGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 184 RLVRHLHEVSHRKNESFNEVNCAALPTNLIESELFGYSGGSFTGANREgKKGLLESAHKGTLFLDEIGEMPLEIQAKLLQ 263
Cdd:TIGR01817 234 LIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQ-RKGRFELADGGTLFLDEIGEISPAFQAKLLR 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 264 VLQEKTFRPIGGRELKKVDVRIVAATNRDLSEMVKQGTFRKDLYYRLNVIPIAIPPLRERTEDILPLIYHYLQHFNKKYG 343
Cdd:TIGR01817 313 VLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENG 392
|
250 260 270
....*....|....*....|....*....|.
gi 452102076 344 RDVKLAPGTLQMFVGYPWEGNNREIENVIER 374
Cdd:TIGR01817 393 RPLTITPSAIRVLMSCKWPGNVRELENCLER 423
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
120-435 |
7.91e-94 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 292.46 E-value: 7.91e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 120 QLRQKVEEMDNQLKTYKKELRETYEhegLIFKSLAMQKIVDTIKKVSVVDSTVLVLGETGVGKSRLVRHLHEVSHRKNES 199
Cdd:PRK05022 164 QLESQAELPQDVAEFLRQEALKEGE---MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKP 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 200 FNEVNCAALPTNLIESELFGYSGGSFTGA--NREGKkglLESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGGRE 277
Cdd:PRK05022 241 LVYLNCAALPESLAESELFGHVKGAFTGAisNRSGK---FELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDR 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 278 LKKVDVRIVAATNRDLSEMVKQGTFRKDLYYRLNVIPIAIPPLRERTEDILPLIYHYLQHFNKKYG-RDVKLAPGTLQMF 356
Cdd:PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGlRSLRLSPAAQAAL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 357 VGYPWEGNNREIENVIER-------IVITVDDVVTVEDLPL---------SMQEAAVEQSGQSLYKMLEEVERNIILKAY 420
Cdd:PRK05022 398 LAYDWPGNVRELEHVISRaallaraRGAGRIVTLEAQHLDLpaevalpppEAAAAPAAVVSQNLREATEAFQRQLIRQAL 477
|
330
....*....|....*.
gi 452102076 421 KTYGSSY-KVAEFLQI 435
Cdd:PRK05022 478 AQHQGNWaAAARALEL 493
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
146-437 |
1.60e-91 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 284.72 E-value: 1.60e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 146 EGLIFKSLAMQKIVDTIKKVSVVDSTVLVLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAALPTNLIESELFGYSGGSF 225
Cdd:TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAF 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 226 TGANREgKKGLLESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGGRELKKVDVRIVAATNRDLSEMVKQGTFRKD 305
Cdd:TIGR02915 219 TGAVKQ-TLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFRED 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 306 LYYRLNVIPIAIPPLRERTEDILPLIYHYLQHFNKKYGRDVK-LAPGTLQMFVGYPWEGNNREIENVIERIVITVD-DVV 383
Cdd:TIGR02915 298 LFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKgFTDDALRALEAHAWPGNVRELENKVKRAVIMAEgNQI 377
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 452102076 384 TVEDLPLSMQEAAVEQSGQSLYKMLEEVERNIILKAY-KTYGSSYKVAEFLQISQ 437
Cdd:TIGR02915 378 TAEDLGLDARERAETPLEVNLREVRERAEREAVRKAIaRVDGNIARAAELLGITR 432
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
105-446 |
5.52e-82 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 262.49 E-value: 5.52e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 105 LRRVISYSRDLTELYQLRQKVEEMDNQlktyKKELRETYEHEGLIFKSLAMQKIVDTIKKVSVVDSTVLVLGETGVGKSR 184
Cdd:TIGR02329 175 VRQAFDDALDVARATRLRQAATLRSAT----RNQLRTRYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKEL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 185 LVRHLHEVSHRKNESFNEVNCAALPTNLIESELFGYSGGSFTGANREGKKGLLESAHKGTLFLDEIGEMPLEIQAKLLQV 264
Cdd:TIGR02329 251 VAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRV 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 265 LQEKTFRPIGGRELKKVDVRIVAATNRDLSEMVKQGTFRKDLYYRLNVIPIAIPPLRERTEDILPLIYHYLQHfnKKYGR 344
Cdd:TIGR02329 331 LEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQ--AAAAL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 345 DVKLAPGTLQMFVG-------YPWEGNNREIENVIERIVITVDDVVTVEDLPLSMQEAA---VEQSGQSLYKMLEEVERN 414
Cdd:TIGR02329 409 RLPDSEAAAQVLAGvadplqrYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRALApelAEASGKGKTSALSLRERS 488
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 452102076 415 II--------LKAYKtyGSSYKVAEFLQISQSAATRKIKK 446
Cdd:TIGR02329 489 RVealavraaLERFG--GDRDAAAKALGISRTTLWRRLKA 526
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
127-446 |
2.64e-75 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 242.63 E-value: 2.64e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 127 EMDNQLKTYKKELRETYE-----------HEGLIFKSLAMQKIVDTIKKVSVVDSTVLVLGETGVGKSRLVRHLHEVSHR 195
Cdd:PRK10365 109 DFDNLQATLEKALAHTHSidaetpavtasQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 196 KNESFNEVNCAALPTNLIESELFGYSGGSFTGANREgKKGLLESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGG 275
Cdd:PRK10365 189 SEKPLVTLNCAALNESLLESELFGHEKGAFTGADKR-REGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGS 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 276 RELKKVDVRIVAATNRDLSEMVKQGTFRKDLYYRLNVIPIAIPPLRERTEDILPLIYHYLQHFNKKYGRDVK-LAPGTLQ 354
Cdd:PRK10365 268 NQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKgFTPQAMD 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 355 MFVGYPWEGNNREIENVIERIVITVDDVVTVE-DLPLSMQEAAVEQSGQSLYKMLEEVERNIILKAY-KTYGSSYKVAEF 432
Cdd:PRK10365 348 LLIHYDWPGNIRELENAVERAVVLLTGEYISErELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALeKTGGNKTEAARQ 427
|
330
....*....|....
gi 452102076 433 LQISQSAATRKIKK 446
Cdd:PRK10365 428 LGITRKTLLAKLSR 441
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
128-447 |
7.76e-74 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 240.74 E-value: 7.76e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 128 MDNQLKtyKKELRETYEHEGLIFKSLAMQKIVDTIKKVSVVDSTVLVLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAA 207
Cdd:PRK10820 188 MGRQLQ--NLAVNDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCAS 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 208 LPTNLIESELFGYSGGSFTGAnREGKKGLLESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGGRELKKVDVRIVA 287
Cdd:PRK10820 266 IPDDVVESELFGHAPGAYPNA-LEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 288 ATNRDLSEMVKQGTFRKDLYYRLNVIPIAIPPLRERTEDILPLIYHYLQHFNKKYG-RDVKLAPGTLQMFVGYPWEGNNR 366
Cdd:PRK10820 345 ATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGvPRPKLAADLNTVLTRYGWPGNVR 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 367 EIENVIERIVITVD-DVVTVEDLPLSMQEAAVEQSGQSLYKMLEEV----ERNIILKAYKTYGSSYKVAEFLQISQSAAT 441
Cdd:PRK10820 425 QLKNAIYRALTQLEgYELRPQDILLPDYDAAVAVGEDAMEGSLDEItsrfERSVLTRLYRNYPSTRKLAKRLGVSHTAIA 504
|
....*.
gi 452102076 442 RKIKKF 447
Cdd:PRK10820 505 NKLREY 510
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
139-374 |
1.23e-73 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 240.78 E-value: 1.23e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 139 LRETYEHEGLIFKSLAMQKIVDTIKKVSVVDSTVLVLGETGVGKSRLVRHLH--------EVSHRKNESFNEVNCAALPT 210
Cdd:PRK15424 212 LRTRYVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNCGAIAE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 211 NLIESELFGYSGGSFTGANREGKKGLLESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGGRELKKVDVRIVAATN 290
Cdd:PRK15424 292 SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 291 RDLSEMVKQGTFRKDLYYRLNVIPIAIPPLRERTEDILPLIYHYLQHfnKKYGRDVKLAPGTLQ-------MFVGYPWEG 363
Cdd:PRK15424 372 CDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQ--SLAALSAPFSAALRQglqqcetLLLHYDWPG 449
|
250
....*....|.
gi 452102076 364 NNREIENVIER 374
Cdd:PRK15424 450 NVRELRNLMER 460
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
116-374 |
1.76e-73 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 243.97 E-value: 1.76e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 116 TELYQLRQKVEE----MDNQLkTYKK--ELRETYEHEGL----------------IFKSLAMQKIVDTIKKVSVVDSTVL 173
Cdd:PRK15429 325 TNLKLLRQIAERvaiaVDNAL-AYQEihRLKERLVDENLalteqlnnvdsefgeiIGRSEAMYSVLKQVEMVAQSDSTVL 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 174 VLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAALPTNLIESELFGYSGGSFTGANREgKKGLLESAHKGTLFLDEIGEM 253
Cdd:PRK15429 404 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ-RIGRFELADKSSLFLDEVGDM 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 254 PLEIQAKLLQVLQEKTFRPIGGRELKKVDVRIVAATNRDLSEMVKQGTFRKDLYYRLNVIPIAIPPLRERTEDILPLIYH 333
Cdd:PRK15429 483 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKA 562
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 452102076 334 YLQHFNKKYGRDVKLAPG-TLQMFVGYPWEGNNREIENVIER 374
Cdd:PRK15429 563 FTFKIARRMGRNIDSIPAeTLRTLSNMEWPGNVRELENVIER 604
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
174-447 |
1.75e-69 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 223.96 E-value: 1.75e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 174 VLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAALPTNLIESelfgysggsftganregkkgllesahkgtlfldeigem 253
Cdd:COG3604 120 ILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 254 pleiqakllqvLQEKTFRPIGGRELKKVDVRIVAATNRDLSEMVKQGTFRKDLYYRLNVIPIAIPPLRERTEDILPLIYH 333
Cdd:COG3604 162 -----------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLLAEH 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 334 YLQHFNKKYGRDVK-LAPGTLQMFVGYPWEGNNREIENVIERIVITVDDVVTVEDLPLSMQEAAveqsgqslykmLEEVE 412
Cdd:COG3604 231 FLEKFSRRLGKPILrLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAPGSREA-----------LEEVE 299
|
250 260 270
....*....|....*....|....*....|....*.
gi 452102076 413 RNIILKAYK-TYGSSYKVAEFLQISQSAATRKIKKF 447
Cdd:COG3604 300 REHILEALErTGGNIAGAARLLGLTPSTLRSRMKKL 335
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
148-446 |
1.42e-68 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 225.91 E-value: 1.42e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 148 LIFKSLAMQKIVDTIKKVSVVDSTVLVLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAALPTNLIESELFGYSGGSFTG 227
Cdd:PRK10923 140 IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 228 ANrEGKKGLLESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGGRELKKVDVRIVAATNRDLSEMVKQGTFRKDLY 307
Cdd:PRK10923 220 AN-TIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 308 YRLNVIPIAIPPLRERTEDILPLIYHYLQHFNKKYGRDVK-LAPGTLQMFVGYPWEGNNREIENVIE-RIVITVDDVVTV 385
Cdd:PRK10923 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKlLHPETEAALTRLAWPGNVRQLENTCRwLTVMAAGQEVLI 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 386 EDLPLSMQEAAVE-----------------------QSGQS--LYKMLEEVERNIILKAYK-TYGSSYKVAEFLQISQSA 439
Cdd:PRK10923 379 QDLPGELFESTVPestsqmqpdswatllaqwadralRSGHQnlLSEAQPELERTLLTTALRhTQGHKQEAARLLGWGRNT 458
|
....*..
gi 452102076 440 ATRKIKK 446
Cdd:PRK10923 459 LTRKLKE 465
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
1-447 |
2.23e-67 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 226.87 E-value: 2.23e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 1 MVAEKERVLMDLKDVFEYAFDEIFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKelqkDGIFYPSATLEVIEKKRPIE 80
Cdd:PRK11388 194 LLAESNRHLNQLNALLESMDDGVIAWDEQGNLQFLNAQAARLLRLDATASQGRAIT----ELLTLPAVLQQAIKQAHPLK 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 81 LVQTT--KSGEYLH--VRTRPVFDDEGNlrrviSYSRDLTELYQLRQKveeMDNQLKtykkelRETYEHEGLIFKSLAMQ 156
Cdd:PRK11388 270 HVEVTfeSQGQFIDavITLKPIIEGQGT-----SFILLLHPVEQMRQL---MTSQLG------KVSHTFDHMPQDSPQMR 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 157 KIVDTIKKVSVVDSTVLVLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAALPTNLIESELFGysggSFTGANREGKKGL 236
Cdd:PRK11388 336 RLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG----SDRTDSENGRLSK 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 237 LESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGGRELKKVDVRIVAATNRDLSEMVKQGTFRKDLYYRLNVIPIA 316
Cdd:PRK11388 412 FELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEIT 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 317 IPPLRERTEDILPLIYHYLQHFNKKYGRDVKLAPGTLQMFVGYPWEGNNREIENVIERIVITVDDVV-TVEDLPLSM--Q 393
Cdd:PRK11388 492 IPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRiRLSDLPEHLftE 571
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 452102076 394 EAAVEQSGQSLYKM--LEEVERNIILKAYK-TYGSSYKVAEFLQISQSAATRKIKKF 447
Cdd:PRK11388 572 QATDDVSATRLSTSlsLAELEKEAIINAAQvCGGRIQEMAALLGIGRTTLWRKMKQH 628
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
146-374 |
1.93e-63 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 211.62 E-value: 1.93e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 146 EGLIFKSLAMQKIVDTIKKVSVVDSTVLVLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAALPTNLIESELFGYSGGSF 225
Cdd:PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAF 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 226 TGA--NREGkkgLLESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGGRELKKVDVRIVAATNRDLSEMVKQGTFR 303
Cdd:PRK15115 214 TGAvsNREG---LFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFR 290
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 452102076 304 KDLYYRLNVIPIAIPPLRERTEDILPLIYHYLQHFNKKYGRDVK-LAPGTLQMFVGYPWEGNNREIENVIER 374
Cdd:PRK15115 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRaFSTDAMKRLMTASWPGNVRQLVNVIEQ 362
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
169-374 |
4.17e-56 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 188.73 E-value: 4.17e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 169 DSTVLVLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAALPTNLIESELFGYSGGSFTGANREgKKGLLESAHKGTLFLD 248
Cdd:PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLD 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 249 EIGEMPLEIQAKLLQVLQEKTFRPIGGRELKKVDVRIVAATNRDLSEMVKQGTFRKDLYYRLNVIPIAIPPLRERTEDIL 328
Cdd:PRK11608 108 ELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIM 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 452102076 329 PLIyhylQHFNKKYGRDVKLA--PG----TLQMFVGYPWEGNNREIENVIER 374
Cdd:PRK11608 188 LMA----EHFAIQMCRELGLPlfPGfterARETLLNYRWPGNIRELKNVVER 235
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
157-367 |
3.09e-47 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 170.40 E-value: 3.09e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 157 KIVDTIKKVSVvDST--VLVLGETGVGKSRLVRHLHEVSHRKNE---SFNEVNCAALPTNLIESELFGYSGGSFTGANRE 231
Cdd:COG4650 195 RLIEQIERVAI-RSRapILLTGPTGAGKSQLARRIYELKKARHQvsgRFVEVNCATLRGDGAMSALFGHVKGAFTGAVSD 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 232 gKKGLLESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGG-RELKKvDVRIVAATNRDLSEMVKQGTFRKDLYYRL 310
Cdd:COG4650 274 -RAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSdKEVSS-DFQLIAGTNRDLRQEVAEGRFREDLLARI 351
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 452102076 311 NVIPIAIPPLRERTEDILPLIYHYLQHFNKKYGRDVKLAPGTLQMFVGY------PWEGNNRE 367
Cdd:COG4650 352 NLWTFRLPGLAERREDIEPNLDYELARFAREQGRRVRFNKEARARYLAFatspeaLWSGNFRD 414
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
172-372 |
1.08e-27 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 116.36 E-value: 1.08e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 172 VLVLGETGVGKSRLVRHLHE--VSHR---KNESFNEVNCAALPTN--LIESELFGYSGGSFTGANREgKKGLLESAHKGT 244
Cdd:COG1221 133 TLILGPTGVGKSFFAELMYEyaIEIGvlpEDAPFVVFNCADYANNpqLLMSQLFGYVKGAFTGADKD-KEGLIEKADGGI 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 245 LFLDEIGEMPLEIQAKLLQVLQEKTFRPIG--GRElKKVDVRIVAATNRDL-SEMVKqgTFRKdlyyRlnvIP--IAIPP 319
Cdd:COG1221 212 LFLDEVHRLPPEGQEMLFTFMDKGIYRRLGetEKT-RKANVRIIFATTEDPeSSLLK--TFLR----R---IPmvIKLPS 281
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 452102076 320 LRERT-EDILPLIYHYLQHFNKKYGRDVKLAPGTLQMFVGYPWEGNNREIENVI 372
Cdd:COG1221 282 LEERSlEERLELIKHFFKEEAKRLNKPIKVSKEVLKALLLYDCPGNIGQLKSDI 335
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
155-319 |
2.73e-22 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 92.59 E-value: 2.73e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 155 MQKIVDTIKKV--SVVDSTVLVLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAALPTNLIESELFGYSggsftgaNREG 232
Cdd:cd00009 3 QEEAIEALREAleLPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-------LVRL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 233 KKGLLESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIggrelKKVDVRIVAATNRDLSemvkqGTFRKDLYYRLNV 312
Cdd:cd00009 76 LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRPLL-----GDLDRALYDRLDI 145
|
....*..
gi 452102076 313 IpIAIPP 319
Cdd:cd00009 146 R-IVIPL 151
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
151-320 |
5.04e-18 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 80.46 E-value: 5.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 151 KSLAMQKIVDTIKKVSVVDSTVLVLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAALPtnlieselfgysggsftganr 230
Cdd:pfam14532 3 ASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAP--------------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 231 egkKGLLESAHKGTLFLDEIGEMPLEIQAKLLQVLQektfrpiggrELKKVDVRIVAATNRDLSEMVKQGTFRKDLYYRL 310
Cdd:pfam14532 62 ---LELLEQAKGGTLYLKDIADLSKALQKGLLLLLA----------KAEGYRVRLVCTSSKDLPQLAAAGLFDEQLYFEL 128
|
170
....*....|
gi 452102076 311 NVIPIAIPPL 320
Cdd:pfam14532 129 SALRLHVPPL 138
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
172-296 |
4.21e-13 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 66.16 E-value: 4.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 172 VLVLGETGVGKSRLVRHLhevSHR-KNESFNEVNCaalPTNLIESELFG----------YSGGSFTGANREGKkgllesa 240
Cdd:pfam07728 2 VLLVGPPGTGKTELAERL---AAAlSNRPVFYVQL---TRDTTEEDLFGrrnidpggasWVDGPLVRAAREGE------- 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 452102076 241 hkgTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGGRELKKV---DVRIVAATN---RDLSEM 296
Cdd:pfam07728 69 ---IAVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMNpldRGLNEL 127
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
3-134 |
1.30e-12 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 67.74 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 3 AEKERVLMDLKDVFEYAFDEIFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKELQ--KDGIFYPSATLEVIEKKRP-- 78
Cdd:COG2202 4 EALEESERRLRALVESSPDAIIITDLDGRILYVNPAFERLTGYSAEELLGKTLRDLLppEDDDEFLELLRAALAGGGVwr 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 452102076 79 IELVQTTKSGEYLHVRTR--PVFDDEGNLRRVISYSRDLTELYQLRQKVEEMDNQLKT 134
Cdd:COG2202 84 GELRNRRKDGSLFWVELSisPVRDEDGEITGFVGIARDITERKRAEEALRESEERLRL 141
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
12-129 |
1.07e-10 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 62.94 E-value: 1.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 12 LKDVFEYAFDEIFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKELQKDGIFYPSATLEVIEKKRPI---ELVQTTKSG 88
Cdd:COG3852 9 LRAILDSLPDAVIVLDADGRITYVNPAAERLLGLSAEELLGRPLAELFPEDSPLRELLERALAEGQPVterEVTLRRKDG 88
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 452102076 89 E--YLHVRTRPVFDDEGNlRRVISYSRDLTELYQLRQKVEEMD 129
Cdd:COG3852 89 EerPVDVSVSPLRDAEGE-GGVLLVLRDITERKRLERELRRAE 130
|
|
| PAS_9 |
pfam13426 |
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor ... |
29-117 |
8.74e-10 |
|
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor domain. It recognizes FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 463873 [Multi-domain] Cd Length: 93 Bit Score: 55.55 E-value: 8.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 29 QGIVVRVNSTCERHYQLAAEELVGKHVKELQKDGIF--YPSATLEVIEKKRPIELVQTTKSGEYLHVRT--RPVFDDEGN 104
Cdd:pfam13426 1 DGRIIYVNDAALRLLGYTREELLGKSITDLFAEPEDseRLREALREGKAVREFEVVLYRKDGEPFPVLVslAPIRDDGGE 80
|
90
....*....|...
gi 452102076 105 LRRVISYSRDLTE 117
Cdd:pfam13426 81 LVGIIAILRDITE 93
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
171-292 |
1.30e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 56.61 E-value: 1.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 171 TVLVLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAALPTNLIESELFGYSGGSFTGANREGK----KGLLESAHKGTLF 246
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRlrlaLALARKLKPDVLI 83
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 452102076 247 LDEIGEMPLEIQAKLLQVLQEktfRPIGGRELKKVDVRIVAATNRD 292
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDE 126
|
|
| PAS_4 |
pfam08448 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
23-120 |
2.48e-09 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain is associated to signalling systems and works as a signal sensor domain. It recognizes differently substituted aromatic hydrocarbons, oxygen, different dodecanoic acids, autoinducers, 3,5-dimethyl-pyrazin-2-ol and N-alanyl-aminoacetone (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 312075 [Multi-domain] Cd Length: 110 Bit Score: 54.73 E-value: 2.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 23 IFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKELQKDGIFYPSATL--EVIEKKRPIELVQTT---KSGEYLHVRTRP 97
Cdd:pfam08448 8 LAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAELLPPEDAARLERAlrRALEGEEPIDFLEELllnGEERHYELRLTP 87
|
90 100
....*....|....*....|...
gi 452102076 98 VFDDEGNLRRVISYSRDLTELYQ 120
Cdd:pfam08448 88 LRDPDGEVIGVLVISRDITERRR 110
|
|
| sensory_box |
TIGR00229 |
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain ... |
12-124 |
2.02e-08 |
|
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. [Regulatory functions, Small molecule interactions]
Pssm-ID: 272971 [Multi-domain] Cd Length: 124 Bit Score: 52.29 E-value: 2.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 12 LKDVFEYAFDEIFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKELQKDGifYPSATLEVIEKKRP-------IELVQT 84
Cdd:TIGR00229 5 YRAIFESSPDAIIVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIPEE--DREEVRERIERRLEgepepvsEERRVR 82
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 452102076 85 TKSGE--YLHVRTRPVFDDeGNLRRVISYSRDLTELYQLRQK 124
Cdd:TIGR00229 83 RKDGSeiWVEVSVSPIRTN-GGELGVVGIVRDITERKEAEEA 123
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
12-124 |
1.50e-06 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 49.25 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 12 LKDVFEYAFDEIFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKEL-----QKDGIFYPSATLEVIEKKRPIELVQTTK 86
Cdd:COG2202 139 LRLLVENAPDGIFVLDLDGRILYVNPAAEELLGYSPEELLGKSLLDLlhpedRERLLELLRRLLEGGRESYELELRLKDG 218
|
90 100 110
....*....|....*....|....*....|....*....
gi 452102076 87 SGEYLHVRTRPVFD-DEGNLRRVISYSRDLTELYQLRQK 124
Cdd:COG2202 219 DGRWVWVEASAVPLrDGGEVIGVLGIVRDITERKRAEEA 257
|
|
| PAS |
cd00130 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
23-115 |
1.66e-06 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Pssm-ID: 238075 [Multi-domain] Cd Length: 103 Bit Score: 46.47 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 23 IFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKELQKDGIFYPSA----TLEVIEKKRPIELVQTTKSGEYLHVRTR-- 96
Cdd:cd00130 5 VIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRerleNLLSGGEPVTLEVRLRRKDGSVIWVLVSlt 84
|
90
....*....|....*....
gi 452102076 97 PVFDDEGNLRRVISYSRDL 115
Cdd:cd00130 85 PIRDEGGEVIGLLGVVRDI 103
|
|
| KinE |
COG5809 |
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ... |
12-145 |
1.68e-06 |
|
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444511 [Multi-domain] Cd Length: 489 Bit Score: 50.36 E-value: 1.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 12 LKDVFEYAFDEIFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKELQKDGIFYPSATLEVIEKKRPI----ELVQTTKS 87
Cdd:COG5809 17 FRSLFENAPDAILILDLEGKILKVNPAAERIFGYTEDELLGTNILDFLHPDDEKELREILKLLKEGESrdelEFELRHKN 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 88 GEYLHVRTR--PVFDDEGNLRRVISYSRDLTELyqlrqkvEEMDNQLKTYKKELRETYEH 145
Cdd:COG5809 97 GKRLEFSSKlsPIFDQNGDIEGMLAISRDITER-------KRMEEALRESEEKFRLIFNH 149
|
|
| PAS |
pfam00989 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
23-109 |
4.74e-06 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 45.49 E-value: 4.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 23 IFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKEL---QKDGIFYPSAT--LEVIEKKRPIELVQTTKSGE--YLHVRT 95
Cdd:pfam00989 14 IFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLipeEDDAEVAELLRqaLLQGEESRGFEVSFRVPDGRprHVEVRA 93
|
90
....*....|....
gi 452102076 96 RPVFDDEGNLRRVI 109
Cdd:pfam00989 94 SPVRDAGGEILGFL 107
|
|
| HTH_50 |
pfam18024 |
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription ... |
401-447 |
7.95e-06 |
|
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription factor whose major function is to control the expression of genes important in the biosynthesis and transport of aromatic amino acids. This entry represents the C-terminal helix-turn-helix DNA-binding domain of TyrR and related proteins.
Pssm-ID: 407862 [Multi-domain] Cd Length: 50 Bit Score: 42.79 E-value: 7.95e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 452102076 401 GQSLYKMLEEVERNIILKAYKTYGSSYKVAEFLQISQSAATRKIKKF 447
Cdd:pfam18024 1 EMSLKEYVSYIERELIGAAYENYKSARKVAKALGLSHTTIANKMKRY 47
|
|
| PRK11360 |
PRK11360 |
two-component system sensor histidine kinase AtoS; |
21-125 |
1.26e-04 |
|
two-component system sensor histidine kinase AtoS;
Pssm-ID: 236901 [Multi-domain] Cd Length: 607 Bit Score: 44.57 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 21 DEIFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKELqkdgiFYPSA--------TLEVIEKKRPIELVQTTKSGEY-L 91
Cdd:PRK11360 273 DGVIAIDRQGKITTMNPAAEVITGLQRHELVGKPYSEL-----FPPNTpfasplldTLEHGTEHVDLEISFPGRDRTIeL 347
|
90 100 110
....*....|....*....|....*....|....
gi 452102076 92 HVRTRPVFDDEGNLRRVISYSRDLTELYQLRQKV 125
Cdd:PRK11360 348 SVSTSLLHNTHGEMIGALVIFSDLTERKRLQRRV 381
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
11-58 |
1.83e-04 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 39.69 E-value: 1.83e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 452102076 11 DLKDVFEYAFDEIFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKEL 58
Cdd:smart00091 2 RLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLEL 49
|
|
| KinE |
COG5809 |
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ... |
12-129 |
2.32e-04 |
|
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444511 [Multi-domain] Cd Length: 489 Bit Score: 43.42 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 12 LKDVFEYAFDEIFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKEL--QKDGIFYPSATLEVIEKKRP--IELVQTTKS 87
Cdd:COG5809 143 FRLIFNHSPDGIIVTDLDGRIIYANPAACKLLGISIEELIGKSILELihSDDQENVAAFISQLLKDGGIaqGEVRFWTKD 222
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 452102076 88 GE--YLHVRTRPVFDDEGNLRRVIsYSRDLTELYQLRQKVEEMD 129
Cdd:COG5809 223 GRwrLLEASGAPIKKNGEVDGIVI-IFRDITERKKLEELLRKSE 265
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
132-315 |
4.08e-04 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 41.01 E-value: 4.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 132 LKTYKKELRETyehegLIFKSLAMQKIVDTIKKVSV-------VDSTVLVLGETGVGKSRLVRHLHEVSHRKNESFNEVN 204
Cdd:cd19499 2 LLNLEERLHER-----VVGQDEAVKAVSDAIRRARAglsdpnrPIGSFLFLGPTGVGKTELAKALAELLFGDEDNLIRID 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 205 CAAL-----PTNLIESELfGYSG----GSFTGANREGKKGLlesahkgtLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGG 275
Cdd:cd19499 77 MSEYmekhsVSRLIGAPP-GYVGytegGQLTEAVRRKPYSV--------VLLDEIEKAHPDVQNLLLQVLDDGRLTDSHG 147
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 452102076 276 RElkkVDVR---IVAATNrdlsemvkqgTFRKDLYYRLNVIPI 315
Cdd:cd19499 148 RT---VDFKntiIIMTSN----------HFRPEFLNRIDEIVV 177
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
172-191 |
4.11e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 42.92 E-value: 4.11e-04
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
172-267 |
1.42e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 39.41 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 172 VLVLGETGVGKSRLVRHLHEVSHRKNESFNEVNCAALPTNLIESELFGYSGGSFTGANREGKKGLLESAHKGTLFLDEIG 251
Cdd:pfam13191 27 VLLTGEAGTGKTTLLRELLRALERDGGYFLRGKCDENLPYSPLLEALTREGLLRQLLDELESSLLEAWRAALLEALAPVP 106
|
90
....*....|....*.
gi 452102076 252 EMPLEIQAKLLQVLQE 267
Cdd:pfam13191 107 ELPGDLAERLLDLLLR 122
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
3-126 |
2.42e-03 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 39.95 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 3 AEKERVLMDLKDVFEYAFDEIFVTDEQGIVVRVNSTCERHYQLAAEELVGKHVKELQKDgIFYPSATLEVIEKKRPIELV 82
Cdd:COG5000 83 EELEERRRYLETILENLPAGVIVLDADGRITLANPAAERLLGIPLEELIGKPLEELLPE-LDLAELLREALERGWQEEIE 161
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 452102076 83 QTTKSGEYLHVRTRPvFDDEGNLRRVisysRDLTELYQlRQKVE 126
Cdd:COG5000 162 LTRDGRRTLLVRASP-LRDDGYVIVF----DDITELLR-AERLA 199
|
|
| bpMoxR |
pfam20030 |
MoxR domain in the MoxR-vWA-beta-propeller ternary systems; Core MoxR component domain of the ... |
158-291 |
4.81e-03 |
|
MoxR domain in the MoxR-vWA-beta-propeller ternary systems; Core MoxR component domain of the MoxR-vWA-beta-propeller ternary systems, a class of NTP-dependent biological conflict systems.
Pssm-ID: 437862 [Multi-domain] Cd Length: 205 Bit Score: 38.38 E-value: 4.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452102076 158 IVDTIKKVSVVDSTVLVLGETGVGKSRLVRHLHEVSHRKNESFnevncaaLPTNLIE-SELFgysgGSFTgaNREGKKGL 236
Cdd:pfam20030 20 IIDLLGLALVARENLFLLGPPGTAKSALVRRLAARLGGRYFEY-------LLTRFTEpNELF----GPFD--IRKLREGE 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 452102076 237 LESAHKGTL------FLDEIGEMPLEIQAKLLQVLQEKTFRpiGGRELKKVDVRI-VAATNR 291
Cdd:pfam20030 87 LVTNTEGMLpeaslvFLDELFNANSAILNSLLMVLNERIFR--RGKETRKLPALMfVGASNH 146
|
|
| |
