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Conserved domains on  [gi|440355200|gb|AGC00402|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Platydictya jungermannioides]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-92 9.20e-32

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member PRK06590:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 624  Bit Score: 116.03  E-value: 9.20e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASAFSEphhyfifcnMRFHAITVICILLFIGAVGKSAQI 80
Cdd:PRK06590 164 AGAAAMKAFIVNRVGDVGLALGIFLLFAEFGSLNYDEVFAAAPQFFG---------LGWSALTLICLLLFIGAMGKSAQF 234

                         90
                 ....*....|..
gi 440355200  81 GLHTRLPDAMEG 92
Cdd:PRK06590 235 PLHTWLPDAMEG 246
 
Name Accession Description Interval E-value
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-92 9.20e-32

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 116.03  E-value: 9.20e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASAFSEphhyfifcnMRFHAITVICILLFIGAVGKSAQI 80
Cdd:PRK06590 164 AGAAAMKAFIVNRVGDVGLALGIFLLFAEFGSLNYDEVFAAAPQFFG---------LGWSALTLICLLLFIGAMGKSAQF 234

                         90
                 ....*....|..
gi 440355200  81 GLHTRLPDAMEG 92
Cdd:PRK06590 235 PLHTWLPDAMEG 246
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-92 3.10e-27

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 102.92  E-value: 3.10e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASAFSEPHHYfifcnmrfhaiTVICILLFIGAVGKSAQI 80
Cdd:COG1009  160 ARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTILSSPLL-----------TLILLLLLLGAFGKSAQF 228

                         90
                 ....*....|..
gi 440355200  81 GLHTRLPDAMEG 92
Cdd:COG1009  229 PLHFWLPDAMEG 240
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-92 5.40e-09

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 51.16  E-value: 5.40e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200    1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFArasafsephhyFIFCNMRFHAITVICILLFIGAVGKSAQI 80
Cdd:pfam00361  31 SSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSK-----------ALTGGLNSSGLLLLFLLILVGFLFKSAQV 99

                          90
                  ....*....|..
gi 440355200   81 GLHTRLPDAMEG 92
Cdd:pfam00361 100 PFHTWLPDAYEG 111
 
Name Accession Description Interval E-value
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-92 9.20e-32

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 116.03  E-value: 9.20e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASAFSEphhyfifcnMRFHAITVICILLFIGAVGKSAQI 80
Cdd:PRK06590 164 AGAAAMKAFIVNRVGDVGLALGIFLLFAEFGSLNYDEVFAAAPQFFG---------LGWSALTLICLLLFIGAMGKSAQF 234

                         90
                 ....*....|..
gi 440355200  81 GLHTRLPDAMEG 92
Cdd:PRK06590 235 PLHTWLPDAMEG 246
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-92 1.60e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 109.71  E-value: 1.60e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASAFSEPHHyfifcnmrfhaITVICILLFIGAVGKSAQI 80
Cdd:MTH00210 160 ANKAAIKAMLINRVGDIGLVLAMIMILKEFGTLEFSTISSLLVTNINKES-----------LTIICLLLFIGAVGKSAQL 228

                         90
                 ....*....|..
gi 440355200  81 GLHTRLPDAMEG 92
Cdd:MTH00210 229 GLHTWLPDAMEG 240
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-92 1.38e-27

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 104.00  E-value: 1.38e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASAFSephhyfifcnmrFHAITVICILLFIGAVGKSAQI 80
Cdd:MTH00020 160 ANKAAIKAMLVNRVGDIGLLLAMFLLWDRFGSLDFSSVFNMVVSAP------------SSDITLICLFLFIGAVGKSAQL 227

                         90
                 ....*....|..
gi 440355200  81 GLHTRLPDAMEG 92
Cdd:MTH00020 228 GLHTWLPDAMEG 239
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-92 3.10e-27

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 102.92  E-value: 3.10e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASAFSEPHHYfifcnmrfhaiTVICILLFIGAVGKSAQI 80
Cdd:COG1009  160 ARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTILSSPLL-----------TLILLLLLLGAFGKSAQF 228

                         90
                 ....*....|..
gi 440355200  81 GLHTRLPDAMEG 92
Cdd:COG1009  229 PLHFWLPDAMEG 240
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-92 2.16e-18

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 78.14  E-value: 2.16e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASAFSEPHHYFIFcnmrfhAITVICILLFIGAVGKSAQI 80
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGW------LALLLCILVFLGPMAKSAQF 244

                         90
                 ....*....|..
gi 440355200  81 GLHTRLPDAMEG 92
Cdd:PRK07376 245 PLHVWLPDAMEG 256
ndhF CHL00025
NADH dehydrogenase subunit 5
 7-92 9.48e-18

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 76.08  E-value: 9.48e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   7 KAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASAFSEPHhyfifcNMRFHAITVICILLFIGAVGKSAQIGLHTRL 86
Cdd:CHL00025 177 KAFVTNRVGDFGLLLGILGFYWITGSFEFRDLFEIFNNLIYNN------EVNLLFATLCAFLLFLGPVAKSAQFPLHVWL 250


                 ....*.
gi 440355200  87 PDAMEG 92
Cdd:CHL00025 251 PDAMEG 256
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-92 1.12e-17

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 76.15  E-value: 1.12e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTI---FARASAFSEPHHYFIFCNMRFHAITVICILLFIGAVGKS 77
Cdd:MTH00032 160 ANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFLTFnggSVGSGIMDRGYYGGGAYESPLAPFAIIGILLLIGCIGKS 239

                         90
                 ....*....|....*
gi 440355200  78 AQIGLHTRLPDAMEG 92
Cdd:MTH00032 240 AQLGLHTWLPDAMEG 254
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-92 4.95e-13

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 62.68  E-value: 4.95e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASAFSEPHHYFIFCnmrfhaitvicilLFIGAVGKSAQI 80
Cdd:MTH00208 187 ANSSALQAVIYNRIGDIGIILFLSLSLINFNSWNLNEILSLNNSNSFLINILLFG-------------ILLAAAGKSAQF 253

                         90
                 ....*....|..
gi 440355200  81 GLHTRLPDAMEG 92
Cdd:MTH00208 254 GLHPWLPAAMEG 265
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-92 4.35e-12

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 59.97  E-value: 4.35e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFArasafsephhyfifcNMRFHAITVICILLfiGAVGKSAQI 80
Cdd:MTH00211 159 ANTAALQAVIYNRIGDIGLLLSMVWLLLNLNSWEISQLFI---------------LNLDLTLFLLGLLL--AAMGKSAQF 221

                         90
                 ....*....|..
gi 440355200  81 GLHTRLPDAMEG 92
Cdd:MTH00211 222 GFHPWLPSAMEG 233
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-92 2.14e-10

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 55.17  E-value: 2.14e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFArasafsePHHYFifcnmrfhaiTVICILLFIGAVGKSAQI 80
Cdd:MTH00004 164 ANTAALQAIIYNRIGDIGLILSMAWLAMTLNTWEIQQLFS-------PTQTP----------TLPLLGLILAATGKSAQF 226

                         90
                 ....*....|..
gi 440355200  81 GLHTRLPDAMEG 92
Cdd:MTH00004 227 GLHPWLPAAMEG 238
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-92 3.94e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 54.47  E-value: 3.94e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGiMGCFTI-FQTVDFSTIFarasafsephhyfifcnMRFHAITVICIL-LFIGAVGKSA 78
Cdd:MTH00108 164 ANTAALQAILYNRIGDIGFILA-MAWFLLnLNSWDLQQIF-----------------MLNPNNSNLPLMgLLLAATGKSA 225

                         90
                 ....*....|....
gi 440355200  79 QIGLHTRLPDAMEG 92
Cdd:MTH00108 226 QFGLHPWLPSAMEG 239
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-92 9.44e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 53.30  E-value: 9.44e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASAFsephhyfifcNMRFHAITVIcillfIGAVGKSAQI 80
Cdd:MTH00137 168 ANTAALQAVIYNRVGDIGLILAMAWMATNLNSWEIQQIFALSKDF----------DLTLPLLGLI-----LAATGKSAQF 232

                         90
                 ....*....|..
gi 440355200  81 GLHTRLPDAMEG 92
Cdd:MTH00137 233 GLHPWLPSAMEG 244
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-92 4.52e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 51.45  E-value: 4.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFarasafsephhyfifcnMRFHAITVICILLFIGAVGKSAQI 80
Cdd:MTH00066 162 ANTAALQAVLYNRVGDIGLILSMAWLAMNTNSWELQQIF-----------------LLNDNSTLPLLGLILAAAGKSAQF 224

                         90
                 ....*....|..
gi 440355200  81 GLHTRLPDAMEG 92
Cdd:MTH00066 225 GLHPWLPAAMEG 236
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-92 5.40e-09

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 51.16  E-value: 5.40e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200    1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFArasafsephhyFIFCNMRFHAITVICILLFIGAVGKSAQI 80
Cdd:pfam00361  31 SSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSK-----------ALTGGLNSSGLLLLFLLILVGFLFKSAQV 99

                          90
                  ....*....|..
gi 440355200   81 GLHTRLPDAMEG 92
Cdd:pfam00361 100 PFHTWLPDAYEG 111
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 1-92 1.73e-05

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 41.11  E-value: 1.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIfarasafsephhyfifCNMRFHAITVICILLFIGAVGKSAQI 80
Cdd:PRK06525 161 ALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSAL----------------SGLHGSLKYLVFLGILFAAWGKSAQL 224

                         90
                 ....*....|..
gi 440355200  81 GLHTRLPDAMEG 92
Cdd:PRK06525 225 PFYSWLPDAMEA 236
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-91 2.11e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.06  E-value: 2.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   1 ANKAAIKAMLVNRVGdfGLAL--GIMGCFTIFQTVDFSTIFARASAFSEPHHYFifcnmrfhaitVICILLFIGAVGKSA 78
Cdd:PRK12647 144 ARRAALQALLVTGGG--GLALlaGLILLGNVTGTYSLSELLASGDVIREHPLYL-----------AILLLVLGGAFTKSA 210

                         90
                 ....*....|...
gi 440355200  79 QIGLHTRLPDAME 91
Cdd:PRK12647 211 QFPFHFWLPNAME 223
PRK12646 PRK12646
DUF4040 family protein;
5-91 4.75e-04

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 37.04  E-value: 4.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   5 AIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASAFSEpHHYFIFcnmrfhaitvICILLFIGAVGKSAQIGLHT 84
Cdd:PRK12646 163 AIQSFMITVFGGLALLVGFIMLYIMTGTNNITEILGQADHIKN-HGLFIP----------MIFMFLLGAFTKSAQFPFHI 231


                 ....*..
gi 440355200  85 RLPDAME 91
Cdd:PRK12646 232 WLPRAMA 238
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 5-91 5.51e-04

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 36.83  E-value: 5.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440355200   5 AIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASAFSEpHHYFIFCnmrfhaitviCILLFIGAVGKSAQIGLHT 84
Cdd:PRK12645 163 AQKSMLITVFGGLSMLGGFILLYIMTGSFSIREMIANADEIQN-SPLFIPA----------MILILLGAFTKSAQFPFYI 231


                 ....*..
gi 440355200  85 RLPDAME 91
Cdd:PRK12645 232 WLPDAME 238
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 60-90 5.97e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 34.13  E-value: 5.97e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 440355200  60 HAITVICILLFIGAVGKSAQIGLHTRLPDAM 90
Cdd:PRK12644 200 PAVSVAVVLILVGALSKSAIVPFHFWLPGAM 230
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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