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Conserved domains on  [gi|429841998|gb|AGA15843|]
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maturase K, partial (chloroplast) [Senecio paulsenii subsp. khorasanicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
matK super family cl42950
maturase K
 1-95 1.05e-53

maturase K


The actual alignment was detected with superfamily member CHL00002:

Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 173.94  E-value: 1.05e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429841998   1 NLSHYHSGSSKKKSLYRVKYILRLSCARTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVFSLTFPRVSSISRRLSRGRI 80
Cdd:CHL00002 410 NLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVLSLIFPRTSSTSRRLYRERI 489

                         90
                 ....*....|....*
gi 429841998  81 WYLDIICINDLANHE 95
Cdd:CHL00002 490 WYLDIICINDLVNHE 504
 
Name Accession Description Interval E-value
matK CHL00002
maturase K
 1-95 1.05e-53

maturase K


Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 173.94  E-value: 1.05e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429841998   1 NLSHYHSGSSKKKSLYRVKYILRLSCARTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVFSLTFPRVSSISRRLSRGRI 80
Cdd:CHL00002 410 NLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVLSLIFPRTSSTSRRLYRERI 489

                         90
                 ....*....|....*
gi 429841998  81 WYLDIICINDLANHE 95
Cdd:CHL00002 490 WYLDIICINDLVNHE 504
Intron_maturas2 pfam01348
Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase ...
 1-46 1.07e-13

Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase and DNA endonuclease activities for site-specific insertion into DNA. Although this type of intron is self splicing in vitro they require a maturase protein for splicing in vivo. It has been shown that a specific region of the aI2 intron is needed for the maturase function. This region was found to be conserved in group II introns and called domain X.


Pssm-ID: 279664 [Multi-domain]  Cd Length: 140  Bit Score: 62.10  E-value: 1.07e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 429841998    1 NLSHYHSGSSKKKSLY-RVKYILRLSCARTLARKHKS-TVRAFLKRLG 46
Cdd:pfam01348  56 GILNYYSFADNKKRLYtRIYYILRLSCAKTLARKLKLgTVRKVIKKFG 103
 
Name Accession Description Interval E-value
matK CHL00002
maturase K
 1-95 1.05e-53

maturase K


Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 173.94  E-value: 1.05e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429841998   1 NLSHYHSGSSKKKSLYRVKYILRLSCARTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVFSLTFPRVSSISRRLSRGRI 80
Cdd:CHL00002 410 NLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVLSLIFPRTSSTSRRLYRERI 489

                         90
                 ....*....|....*
gi 429841998  81 WYLDIICINDLANHE 95
Cdd:CHL00002 490 WYLDIICINDLVNHE 504
Intron_maturas2 pfam01348
Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase ...
 1-46 1.07e-13

Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase and DNA endonuclease activities for site-specific insertion into DNA. Although this type of intron is self splicing in vitro they require a maturase protein for splicing in vivo. It has been shown that a specific region of the aI2 intron is needed for the maturase function. This region was found to be conserved in group II introns and called domain X.


Pssm-ID: 279664 [Multi-domain]  Cd Length: 140  Bit Score: 62.10  E-value: 1.07e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 429841998    1 NLSHYHSGSSKKKSLY-RVKYILRLSCARTLARKHKS-TVRAFLKRLG 46
Cdd:pfam01348  56 GILNYYSFADNKKRLYtRIYYILRLSCAKTLARKLKLgTVRKVIKKFG 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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