|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-237 |
1.43e-102 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 300.97 E-value: 1.43e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00112 53 TEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILST 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 81 MMKLPPTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00112 133 WQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMT 212
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATTISMLSLLG 237
Cdd:MTH00112 213 TPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLS 289
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-236 |
1.40e-88 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 265.51 E-value: 1.40e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00135 53 VEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILST 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 81 MMKLPPTsILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00135 133 WQKLAPF-ALILQIAPTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMT 211
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATTISMLSLL 236
Cdd:MTH00135 212 SSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALL 287
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-236 |
1.72e-84 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 254.85 E-value: 1.72e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00070 53 TEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILST 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 81 MMKLPPTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00070 133 WQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMT 212
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATTISMLSLL 236
Cdd:MTH00070 213 SSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALL 288
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-236 |
1.99e-78 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 239.36 E-value: 1.99e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00105 53 TEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLT 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 81 MMKLPPTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00105 133 WQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMT 212
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATTISMLSLL 236
Cdd:MTH00105 213 LTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALL 288
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-236 |
2.30e-62 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 198.27 E-value: 2.30e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00200 53 VEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILST 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 81 MMKLPPTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00200 133 WQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIIT 212
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATTISMLSLL 236
Cdd:MTH00200 213 LTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLL 288
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-215 |
4.66e-60 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 192.45 E-value: 4.66e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00041 53 VEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIAT 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 81 MMKLPPTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00041 133 WQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIIN 212
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:MTH00041 213 TSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISL 267
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
2-236 |
2.89e-37 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 133.02 E-value: 2.89e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 2 EATTKYFLVQAAASALVLLSSMTNAWSTGqwditqLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLSTM 81
Cdd:MTH00160 55 ESSLKYFLIQALASIILLFSIILNMLNLM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTW 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 82 MKLPPtsiLLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMTA 161
Cdd:MTH00160 129 QKIAP---LILLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISL 205
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 407259477 162 SIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATTISMLSLL 236
Cdd:MTH00160 206 SIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLI 280
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-223 |
6.14e-31 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 116.42 E-value: 6.14e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSmtnawsTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00011 55 SEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILST 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 81 MMKLPPTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00011 129 WQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIIT 208
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEM 223
Cdd:MTH00011 209 TPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-223 |
9.47e-30 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 113.06 E-value: 9.47e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITqltyplscNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00144 53 SESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLT 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 81 MMKLPPtsILLLTSHSLNPTLLTTL---SIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYV 157
Cdd:MTH00144 125 WQKVAP--LFLLSNFLDLYWLAYLLcviSVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYI 202
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259477 158 LMTASIFLTMNTTNTlKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEM 223
Cdd:MTH00144 203 VSSGFLFFSLWSGDS-GSMKDLGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
1-218 |
4.04e-29 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 111.30 E-value: 4.04e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSMTNAWSTgqwditqLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00197 47 NEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLAT 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 81 MMKLPPtsILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00197 120 WQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIM 197
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQEL 218
Cdd:MTH00197 198 FMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSL 255
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
2-215 |
2.76e-21 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 90.86 E-value: 2.76e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 2 EATTKYFLVQAAASALVLLSSMTNAWSTGQWDI-------------TQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQ 68
Cdd:MTH00196 44 EAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 69 GSSLTTALLLSTMMKLPPTSILLltSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIII----IY 144
Cdd:MTH00196 124 GAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFE 201
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 407259477 145 NPKLTLLTFYIYVLMTASIFLTMNTTNTLK--LPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:MTH00196 202 SIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
1-216 |
1.35e-18 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 82.36 E-value: 1.35e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCN-----------LLTTAIAIKLGLAPFHFWFPEVLQG 69
Cdd:pfam00361 32 SEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssgllllflLILVGFLFKSAQVPFHTWLPDAYEG 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 70 SSLT-TALLLSTMMKLPPTSILLLTS--HSLNPT---LLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIII- 142
Cdd:pfam00361 112 APTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALg 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 143 ---IYNPKLTLLTFYIYVLMTASIFL--------TMNTTNTLKLPTLmtsWTKAPTLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:pfam00361 192 agtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL---AKTMPILALVFLVAMLSLAGLPPTAGFLGK 268
|
....*
gi 407259477 212 WSIIQ 216
Cdd:pfam00361 269 FLILA 273
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
2-215 |
1.78e-18 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 83.53 E-value: 1.78e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 2 EATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCN----LLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALL 77
Cdd:MTH00199 148 EAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSILTGDvgkiLITISLLFKLSAAPFHMWAPDVYEGAPTITTAL 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 78 LSTMMKLPPTSILLLTSHSLNPTLLTtlSIMSIALGGWMGLNQTQTRKILAF**ISHMGW----MTIIIIYNPKLTLLTF 153
Cdd:MTH00199 228 LATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYM 305
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 407259477 154 YIYVLMTA---SIFLTMNTTNTLKLPTLMTSwTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:MTH00199 306 IIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
2-218 |
2.39e-14 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 71.30 E-value: 2.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 2 EATTKYFLVQAAASALVLL-SSMTNAwSTGQWDITQLTYPLSCN------------LLTTAIAIKLGLAPFHFWFPEVLQ 68
Cdd:COG1007 153 EAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAALAAGganspllllglvLVLAGLAFKLSAVPFHMWTPDVYE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 69 GSSLTTALLLST---------MMKLpptsiLLLTSHSLNP---TLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMG 136
Cdd:COG1007 232 GAPTPVTAFLATapkiaafaaLLRL-----LVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAG 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 137 WMTIIIIYNPKLTL--LTFY--IYVLMTASIFLTMNTTNTLKLPTLMTS-----WTKAPTLNTTLMLTLLSLAGLPPLTG 207
Cdd:COG1007 307 YLLLGLAAGTPLGVsaALFYllAYLFMNLGAFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAG 386
|
250
....*....|.
gi 407259477 208 FLPKWSIIQEL 218
Cdd:COG1007 387 FFGKFYVFSAA 397
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
2-227 |
1.31e-12 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 66.38 E-value: 1.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 2 EATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCN------------LLTTAIAIKLGLAPFHFWFPEVLQG 69
Cdd:PRK05777 154 EAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALADGsgnsllllfglvFLLVGLAFKLSAVPFHMWTPDVYEG 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 70 SSLTTALLLSTMMKL----PPTSILLLTSHSLNPT---LLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIII 142
Cdd:PRK05777 234 APTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGL 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 143 IYNPKLTL--LTFY--IYVLMTASIF--LTMNTTNTLKLPTLmTSWT----KAPTLNTTLMLTLLSLAGLPPLTGFLPKW 212
Cdd:PRK05777 314 AAGTAEGYsaVLFYllAYLFMTLGAFgvISLLRRKGGEAESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKF 392
|
250
....*....|....*
gi 407259477 213 SIIQELTKQEMTTTA 227
Cdd:PRK05777 393 YVFEAAVEAGLWWLA 407
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
1-237 |
1.58e-12 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 66.12 E-value: 1.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCN------------LLTTAIAIKLGLAPFHFWFPEVLQ 68
Cdd:TIGR01770 152 TEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGmlnisllllgivLILVGLLFKLSAVPFHMWVPDVYE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 69 GSSLTTALLLSTMMKLPPTSILL-------LTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTII 141
Cdd:TIGR01770 232 GAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIG 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 142 IIYNPKLTL--LTFY--IYVLMTASIFLTMNTTNTLKLP-----TLMTSWTK-APTLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:TIGR01770 312 LLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKDEwieyiSDFAGLFKtNPILAILILIFMFSLAGIPPLAGFFGK 391
|
250 260
....*....|....*....|....*.
gi 407259477 212 WSIIQELTKQEMTTTATTISMLSLLG 237
Cdd:TIGR01770 392 FYVFFALLKSGLYWLAVIAVLTSVIG 417
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
45-215 |
3.46e-12 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 65.27 E-value: 3.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 45 LLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLSTMMKLppTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTR 124
Cdd:MTH00198 304 FITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIK 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 125 KILAF**ISHMGWMTIII---IYNPKLTLLTFYIYVLMTASIFLTM----------------------NTTNTLKLPTLM 179
Cdd:MTH00198 382 RLLAYSGIGHIGFILIGVsagTYESLQASWTYAVTYLVSALASFTVictleefgtrtptsrqrdgsfgNYNLVRRLVDLT 461
|
170 180 190
....*....|....*....|....*....|....*.
gi 407259477 180 TSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:MTH00198 462 ILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
1-236 |
4.89e-12 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 64.78 E-value: 4.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCN----------LLTTAIAIKLGLAPFHFWFPEVL-QG 69
Cdd:COG0651 156 LRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYpAA 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 70 SSLTTALLLSTMMKLPPTSILLLTSHSLNP-------TLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIII 142
Cdd:COG0651 236 PSPVSALLSGLLTKVGVYAILRVLTLLFGAdpalflgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 143 -IYNPKLTLLTFYIYV---LMTASIFLT----MNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSI 214
Cdd:COG0651 316 gLGTPLGLAGALFHLLnhaLAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLL 395
|
250 260
....*....|....*....|..
gi 407259477 215 IQELTKQEMTTTATTISMLSLL 236
Cdd:COG0651 396 LQAALEAGAWLLAAVLLLSSLL 417
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
2-211 |
2.03e-11 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 63.10 E-value: 2.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 2 EATTKYFLVQAAASALVL---------------LSSMTNAWSTgqwdiTQLTYPLSCNL----LTTAIAIKLGLAPFHFW 62
Cdd:CHL00049 162 EATMKYLLMGGASSSILVygfswlyglsggeieLQEIVNGLIN-----TQMYNSPGISIalifITVGIGFKLSLAPFHQW 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 63 FPEVLQGSSLTTALLLSTMMKLP----PTSILLLTSHSLNP---TLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHM 135
Cdd:CHL00049 237 TPDVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQI 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 136 GWMTIIII-------YNPKLTLLTFYIYV-LMT-ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLT 206
Cdd:CHL00049 317 GYVIIGIIvgdsndgYASMITYMLFYIFMnLGTfACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLA 396
|
....*
gi 407259477 207 GFLPK 211
Cdd:CHL00049 397 GFFGK 401
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
1-140 |
1.78e-09 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 57.01 E-value: 1.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQW--DITQLT-YPLSCN-------LLTTAIAIKLGLAPFHFWFPEVL-QG 69
Cdd:COG1008 160 IYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAaAPLPLTaqlllflAFFIAFAVKVPMFPFHTWLPDAHvEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 70 SSLTTALLLSTMMK----------LPptsILLLTSHSLNPTLLtTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMT 139
Cdd:COG1008 240 PTAGSVLLAGVLLKmggygllrfaLP---LFPEASAYFAPLLA-ALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVL 315
|
.
gi 407259477 140 I 140
Cdd:COG1008 316 L 316
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
1-216 |
3.64e-08 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 53.02 E-value: 3.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLS----SMTNAWSTGQWDITQLTYPLSCNLLT-----TAIAIKLGLAPFHFWFPEV-LQGS 70
Cdd:TIGR01972 155 IYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVQTWLflaffIAFAVKVPLFPLHTWLPDAhVEAP 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 71 SLTTALLLSTMMKLPPTSILLL-------TSHSLNPtLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIII 143
Cdd:TIGR01972 235 TAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIF 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 144 YNPKLTLLTFYIYV----LMTASIFLTMNT----TNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:TIGR01972 314 SFNELGISGAVFQMishgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLIL 393
|
.
gi 407259477 216 Q 216
Cdd:TIGR01972 394 L 394
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
45-218 |
1.69e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 51.03 E-value: 1.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 45 LLTTAIAIKLGLAPFHFWFPEVLQG-SSLTTALLLSTMMKLPPTSILLLTSHSLNP---------TLLTTLSIMSIALGG 114
Cdd:PRK08375 207 FVLLALALKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGS 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 115 WMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLL--TFYI--YVLMTASIFLT----MNTTNTLKLPTLMTSWTKAP 186
Cdd:PRK08375 287 LAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMP 366
|
170 180 190
....*....|....*....|....*....|..
gi 407259477 187 TLNTTLMLTLLSLAGLPPLTGFLPKWSIIQEL 218
Cdd:PRK08375 367 LTAAAFAVASLSLIGVPPTSGFVSKWYLVVGA 398
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
2-211 |
4.02e-07 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 50.05 E-value: 4.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 2 EATTKYFLVQAAASALVLL-SSMTNAWSTGQWDITQLTYPLSCN----------LLTTAIAIKLGLAPFHFWFPEVLQGS 70
Cdd:PRK02504 161 EAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALITSpslglalalvFVIAGIAFKISAVPFHQWTPDVYEGS 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 71 SLTTALLLSTMMKLPPTSI---LLLTSHSLNPT----LLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIII 143
Cdd:PRK02504 241 PTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLV 320
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259477 144 YNPK--LTLLTFY--IYVLMT----ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:PRK02504 321 AGTEagYASMVFYllAYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
1-142 |
5.99e-07 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 49.43 E-value: 5.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSMT----NAWSTGQWDITQL-TYPLSCNLLT-------TAIAIKLGLAPFHFWFPEVLQ 68
Cdd:PRK05846 160 IYAATKFFLYTLLGSLLMLVAIIYlvvvYYNATGTFDIADLlNLPLPPGVQYwlflaffIAFAVKMPMFPLHTWLPDAHV 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 69 -----GSSLTTALLLST----MMK--LPptsILLLTSHSLNPtLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGW 137
Cdd:PRK05846 240 qaptaGSVLLAGILLKMgaygLLRfsLP---LFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315
|
....*
gi 407259477 138 MTIII 142
Cdd:PRK05846 316 VTLGI 320
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
3-226 |
2.20e-06 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 47.72 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 3 ATTKYFLVQAAASALVLLSSMTNAWSTGQ--WDITQLT---YPLSCNLLT-----TAIAIKLGLAPFHFWFPEVL-QGSS 71
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHgEASA 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 72 LTTALLLSTMMKLPPTSI------LLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYN 145
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAF 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 146 PKL----TLLTFYIYVLMTASIFL----TMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQE 217
Cdd:PRK12561 298 TDLgisgAMLQMISHGLIAAALFFltgvTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVFLG 377
|
....*....
gi 407259477 218 LTKQEMTTT 226
Cdd:PRK12561 378 ITSSDVYSS 386
|
|
| PRK12644 |
PRK12644 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
28-211 |
3.21e-06 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237154 [Multi-domain] Cd Length: 965 Bit Score: 47.61 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 28 STGQWDITQL-TYPLSCNLLTTAIAI-------KLGLAPFHFWFPEVLQGSSLTTALLLSTMM---------KLPPTsil 90
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG--- 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 91 LLTSHSLNPTLLTtLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPK------LTLLTfyIYVLMTASIF 164
Cdd:PRK12644 260 FADVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAMLL--AHALFKAALF 336
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 407259477 165 LTM----NTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:PRK12644 337 LVVgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
1-214 |
2.02e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 45.09 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCN----------LLTTAIAIKLGLAPFHFWFPEVLQG- 69
Cdd:PRK08376 171 IEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSENptvvakialaLFIAGLAMKSGAVPVHMWLPDAYPAa 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 70 -SSLTTALLLSTMMKLPPTSILLLTSHSLNPTLLTT------LSIMSIALGGWMGLNQTQTRKILAF**ISHMGWM---- 138
Cdd:PRK08376 251 pSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMllgl 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 139 --TIIIIYNPKLTLL--------TFYI--YVLMTASIFLT----MNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGL 202
Cdd:PRK08376 331 gvGLAALGDPAMASYgeialaggIYHIvnHALYKALLFLTagavIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGL 410
|
250
....*....|..
gi 407259477 203 PPLTGFLPKWSI 214
Cdd:PRK08376 411 PPFNGFASKWLI 422
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
3-138 |
6.86e-05 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 43.54 E-value: 6.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 3 ATTKYFLVQAAASALVLLSSMTNAWSTG--QWDITQL---TYPLSCNLLTTA-----IAIKLGLAPFHFWFPEV-LQGSS 71
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 407259477 72 LTTALLLSTMMKLPPTSIL------LLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWM 138
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
46-215 |
1.50e-04 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 42.34 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 46 LTTAIAIKLGLA--------PFHFWFPEVLQGSSLTTALLLSTMMKLPPTSILLLTS--HSLNPT---LLTTLSIMSIAL 112
Cdd:PRK12650 206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITALM 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 113 GGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYV----LMTASIFLTM----NTTNTLKLPTLMTSWTK 184
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRRLGSLWRR 365
|
170 180 190
....*....|....*....|....*....|.
gi 407259477 185 APTLNTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:PRK12650 366 MPFTFVSVTIAALSMAAVPPLFGFVSKEGML 396
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
41-158 |
1.81e-04 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 42.05 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 41 LSCNLLTTAIAIKLGLAPFHFWFPEV-LQGSSLTTALLLSTMMKLPPTSILLLTS-------HSLNPTLLTTLSIMSIAL 112
Cdd:PRK08676 207 ASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAEQFSNVLIGLGIFSIAV 286
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 407259477 113 GGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVL 158
Cdd:PRK08676 287 AAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
|
|
| PRK12647 |
PRK12647 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
58-211 |
3.75e-04 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237156 [Multi-domain] Cd Length: 761 Bit Score: 41.06 E-value: 3.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 58 PFHFWFPEVLQGSSLTTALLLS-TMMKLpptSILLLTShsLNP---------TLLTTLSIMSIALGGWMGLNQTQTRKIL 127
Cdd:PRK12647 213 PFHFWLPNAMEAPTPVSAYLHSaTMVKA---GIYLLAR--LNPvlggtplwqTILPLFGGLTMLTGALLAVRQTDLKLIL 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 128 AF**ISHMGWMTIIIIYNPKLTLLTFYIYV----LMTASIFLTMNT----TNTLKLPTLMTSWTKAPTLNTTLMLTLLSL 199
Cdd:PRK12647 288 AYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIidheTGTRDITKLGGLRRAMPITAAAALLAALSM 367
|
170
....*....|..
gi 407259477 200 AGLPPLTGFLPK 211
Cdd:PRK12647 368 AGLPPLFGFLAK 379
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
2-227 |
1.39e-03 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 39.59 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 2 EATTKYFLVQAAASALVLLSSMTNAWSTGQWDI----------TQLTYPLSCNLLTTAIAI-KLGLAPFHFWFPE----- 65
Cdd:PRK08668 147 KASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFadisqglindTSTGFALIVFLFLLAFGVaKAGIFPLHVWAPDaysea 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 66 ------VLQG--SSLTTALLLSTMMKLPPTSILL----LTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**IS 133
Cdd:PRK08668 227 pqsfsaVLSGqlSKLGAYGFLLVLYVLPGTKLFSefgtYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVA 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 134 HMGWMTIIIIYNPKLTLL--TFYI--YVLMTASIFLTMNT----TNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPL 205
Cdd:PRK08668 307 NGGYILVGLGLGTSLGFAggLFHVfnHALFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPM 386
|
250 260
....*....|....*....|..
gi 407259477 206 TGFLPKWSIIQELTKQEMTTTA 227
Cdd:PRK08668 387 SGFASKWLIFEALISKGMPITA 408
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
16-218 |
1.61e-03 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 39.37 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 16 ALVLLSSMTNAWS------TGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLS-TM------- 81
Cdd:COG1009 181 GILLLGAIAGTLNfsellaAAPTILSSPLLTLILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAaTMvkagvyl 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 82 -MKLPPtsILLLTSHSLnpTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIiynpKLTLLTFYIYVLMT 160
Cdd:COG1009 261 lARLSP--LFALSPVWL--TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLT 332
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 161 -----ASIFL-------TMNTTNTLKLPTLmtsWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQEL 218
Cdd:COG1009 333 haffkALLFLgagsvihATGTRDIRKMGGL---RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAA 399
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
45-216 |
3.26e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 38.41 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 45 LLTTAIAIKLGLAPFHFWFPEVL-QGSSLTTALLLSTMMKLPPTSI-----LLLTSHSLNpTLLTTLSIMSIALGGWMGL 118
Cdd:PRK12665 214 VLLVAFGIKAAVFPLSFWLPDSYpTAPAPVTAVFAGLLTKVGVYAIirthtLLFPGGGLD-TLLMVVALLTMVVGILGAI 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 119 NQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYV----LMTASIFLTMN-------TTNTLKLPTLMTSwtkAPT 187
Cdd:PRK12665 293 AQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhiTVQTTLFLVVGlierqagSSSLRRLGGLAKA---SPL 369
|
170 180
....*....|....*....|....*....
gi 407259477 188 LNTTLMLTLLSLAGLPPLTGFLPKWSIIQ 216
Cdd:PRK12665 370 LAVLFFVPALNLGGIPPFSGFIGKVALLE 398
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
49-163 |
4.39e-03 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 37.98 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 49 AIAIKLGLAPFHFWFPEV-LQGSSLTTALLLSTMMKLP-------PTSILLLTSHSLNPTLLtTLSIMSIALGGWMGLNQ 120
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGgyglvrlSWPILPLGAQNLAPAVI-AMGIVGIVYGSFATCRQ 317
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 407259477 121 TQTRKILAF**ISHMGWMTIIIIYNpKLTLLTFYIYVLMTASI 163
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLVTH-DIIGLTGSIFIMLAHGI 359
|
|
|