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Conserved domains on  [gi|392507336|gb|AFM77023|]
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Ycf1, partial (chloroplast) [Colocasia affinis var. jenningsii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf1 super family cl42951
Ycf1; Provisional
 31-70 9.67e-24

Ycf1; Provisional


The actual alignment was detected with superfamily member CHL00204:

Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 92.09  E-value: 9.67e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 392507336   31 LGNPLSLCMKIINSVVIVGLYYGFMTTFSIGPSYLFLLRA 70
Cdd:CHL00204    1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRA 40
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 31-70 9.67e-24

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 92.09  E-value: 9.67e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 392507336   31 LGNPLSLCMKIINSVVIVGLYYGFMTTFSIGPSYLFLLRA 70
Cdd:CHL00204    1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRA 40
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 45-70 3.82e-12

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 59.15  E-value: 3.82e-12
                          10        20
                  ....*....|....*....|....*.
gi 392507336   45 VVIVGLYYGFMTTFSIGPSYLFLLRA 70
Cdd:pfam05758   1 VVVVGLYYGFLTTFSIGPSYLFLLRA 26
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 31-70 9.67e-24

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 92.09  E-value: 9.67e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 392507336   31 LGNPLSLCMKIINSVVIVGLYYGFMTTFSIGPSYLFLLRA 70
Cdd:CHL00204    1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRA 40
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 45-70 3.82e-12

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 59.15  E-value: 3.82e-12
                          10        20
                  ....*....|....*....|....*.
gi 392507336   45 VVIVGLYYGFMTTFSIGPSYLFLLRA 70
Cdd:pfam05758   1 VVVVGLYYGFLTTFSIGPSYLFLLRA 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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