NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|372000885|gb|AEX65519|]
View 

30S ribosomal protein S15, partial (chloroplast) [Pereskiopsis diguetii]

Protein Classification

30S ribosomal protein S15( domain architecture ID 10000021)

30S ribosomal protein S15 binds the central domain of 16S rRNA and is required for the assembly of the ribosomal small subunit.

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
rps15 CHL00027
ribosomal protein S15
 1-88 7.49e-47

ribosomal protein S15


:

Pssm-ID: 214339  Cd Length: 90  Bit Score: 144.33  E-value: 7.49e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372000885  1 MTKKSFISVISHEEKEENRGSVEFQVFRFSNKIGRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLLKKDGVRYKELIS 80
Cdd:CHL00027  1 MVKNSFISVISQEEKEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKKLIS 80


                ....*...
gi 372000885 81 QLNIRKLK 88
Cdd:CHL00027 81 QLGIRELK 88
 
Name Accession Description Interval E-value
rps15 CHL00027
ribosomal protein S15
 1-88 7.49e-47

ribosomal protein S15


Pssm-ID: 214339  Cd Length: 90  Bit Score: 144.33  E-value: 7.49e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372000885  1 MTKKSFISVISHEEKEENRGSVEFQVFRFSNKIGRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLLKKDGVRYKELIS 80
Cdd:CHL00027  1 MVKNSFISVISQEEKEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKKLIS 80


                ....*...
gi 372000885 81 QLNIRKLK 88
Cdd:CHL00027 81 QLGIRELK 88
RpsO COG0184
Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 9-86 7.58e-22

Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S15P/S13E is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439954  Cd Length: 89  Bit Score: 80.87  E-value: 7.58e-22
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 372000885  9 VISHEEKEENRGSVEFQVFRFSNKIGRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLLKKDGVRYKELISQLNIRK 86
Cdd:COG0184  12 IKEYGRHEGDTGSPEVQIALLTERINNLTEHLKEHKKDHHSRRGLLKMVGKRRRLLDYLKKKDIERYRALIAKLGLRK 89
Ribosomal_S15 pfam00312
Ribosomal protein S15;
15-85 2.89e-21

Ribosomal protein S15;


Pssm-ID: 459756  Cd Length: 81  Bit Score: 79.39  E-value: 2.89e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 372000885  15 KEENRGSVEFQVFRFSNKIGRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLLKKDGVRYKELISQLNIR 85
Cdd:pfam00312 11 HPGDTGSPEVQIALLTERINNLTEHLKEHKKDKHSRRGLLKLVGKRRRLLKYLKRKDVERYRYLIEKLGLR 81
Ribosomal_S15p_S13e cd00353
Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and ...
 11-83 2.76e-19

Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.


Pssm-ID: 238213  Cd Length: 80  Bit Score: 74.08  E-value: 2.76e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 372000885 11 SHEEKEENRGSVEFQVFRFSNKIGRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLLKKDGVRYKELISQLN 83
Cdd:cd00353   8 EFGLAEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRLLKYLKRKDRLRYEWLIEKLG 80
S15_bact TIGR00952
ribosomal protein S15, bacterial/organelle; This model is built to recognize specifically ...
 11-86 1.02e-16

ribosomal protein S15, bacterial/organelle; This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130027 [Multi-domain]  Cd Length: 86  Bit Score: 67.73  E-value: 1.02e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 372000885  11 SHEEKEENRGSVEFQVFRFSNKIGRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLLKKDGVRYKELISQLNIRK 86
Cdd:TIGR00952 11 EFQLHEKDTGSPEVQIALLTERINQLTEHLKANKKDHHSRRGLLKLVGRRRRLLKYLKRTDVERYRSLIKRLGLRR 86
 
Name Accession Description Interval E-value
rps15 CHL00027
ribosomal protein S15
 1-88 7.49e-47

ribosomal protein S15


Pssm-ID: 214339  Cd Length: 90  Bit Score: 144.33  E-value: 7.49e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372000885  1 MTKKSFISVISHEEKEENRGSVEFQVFRFSNKIGRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLLKKDGVRYKELIS 80
Cdd:CHL00027  1 MVKNSFISVISQEEKEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKKLIS 80


                ....*...
gi 372000885 81 QLNIRKLK 88
Cdd:CHL00027 81 QLGIRELK 88
rpsO PRK05626
30S ribosomal protein S15; Reviewed
 15-86 1.79e-22

30S ribosomal protein S15; Reviewed


Pssm-ID: 180170  Cd Length: 89  Bit Score: 82.47  E-value: 1.79e-22
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 372000885 15 KEENRGSVEFQVFRFSNKIGRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLLKKDGVRYKELISQLNIRK 86
Cdd:PRK05626 18 HEGDTGSPEVQVALLTERINHLTEHLKEHKKDHHSRRGLLKMVGQRRKLLDYLKKKDVERYRALIERLGLRR 89
RpsO COG0184
Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 9-86 7.58e-22

Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S15P/S13E is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439954  Cd Length: 89  Bit Score: 80.87  E-value: 7.58e-22
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 372000885  9 VISHEEKEENRGSVEFQVFRFSNKIGRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLLKKDGVRYKELISQLNIRK 86
Cdd:COG0184  12 IKEYGRHEGDTGSPEVQIALLTERINNLTEHLKEHKKDHHSRRGLLKMVGKRRRLLDYLKKKDIERYRALIAKLGLRK 89
Ribosomal_S15 pfam00312
Ribosomal protein S15;
15-85 2.89e-21

Ribosomal protein S15;


Pssm-ID: 459756  Cd Length: 81  Bit Score: 79.39  E-value: 2.89e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 372000885  15 KEENRGSVEFQVFRFSNKIGRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLLKKDGVRYKELISQLNIR 85
Cdd:pfam00312 11 HPGDTGSPEVQIALLTERINNLTEHLKEHKKDKHSRRGLLKLVGKRRRLLKYLKRKDVERYRYLIEKLGLR 81
Ribosomal_S15p_S13e cd00353
Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and ...
 11-83 2.76e-19

Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.


Pssm-ID: 238213  Cd Length: 80  Bit Score: 74.08  E-value: 2.76e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 372000885 11 SHEEKEENRGSVEFQVFRFSNKIGRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLLKKDGVRYKELISQLN 83
Cdd:cd00353   8 EFGLAEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRLLKYLKRKDRLRYEWLIEKLG 80
S15_bact TIGR00952
ribosomal protein S15, bacterial/organelle; This model is built to recognize specifically ...
 11-86 1.02e-16

ribosomal protein S15, bacterial/organelle; This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130027 [Multi-domain]  Cd Length: 86  Bit Score: 67.73  E-value: 1.02e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 372000885  11 SHEEKEENRGSVEFQVFRFSNKIGRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLLKKDGVRYKELISQLNIRK 86
Cdd:TIGR00952 11 EFQLHEKDTGSPEVQIALLTERINQLTEHLKANKKDHHSRRGLLKLVGRRRRLLKYLKRTDVERYRSLIKRLGLRR 86
S15_NS1_EPRS_RNA-bind cd00677
S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, ...
 23-67 4.02e-08

S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.


Pssm-ID: 238361  Cd Length: 46  Bit Score: 44.81  E-value: 4.02e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 372000885 23 EFQVFRFSNKIGRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYL 67
Cdd:cd00677   1 EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYL 45
PTZ00119 PTZ00119
40S ribosomal protein S15; Provisional
 20-85 8.22e-05

40S ribosomal protein S15; Provisional


Pssm-ID: 240278  Cd Length: 302  Bit Score: 39.16  E-value: 8.22e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 372000885  20 GSVEFQVFRFSNKIGRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLLKKDGVRYKELISQLNIR 85
Cdd:PTZ00119 125 GSAPVQIGCLTEKILNLRAHLILRCKDHPKKRTMSILLARRQKLMKYLYKTDFELYKHTCNLLKIK 190
rps15p PRK08561
30S ribosomal protein S15P; Reviewed
 35-66 2.73e-03

30S ribosomal protein S15P; Reviewed


Pssm-ID: 236287 [Multi-domain]  Cd Length: 151  Bit Score: 34.45  E-value: 2.73e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 372000885  35 RLTSHLELHKKDYSSQRGLRKILGKRQRLLAY 66
Cdd:PRK08561  97 NLRKHLEENPKDLHNKRGLQLIESKIRRLVKY 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH