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Conserved domains on  [gi|371928607|gb|AEX59013|]
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ribosomal protein L32, partial (chloroplast) [Viburnum ternatum]

Protein Classification

bL32 family ribosomal protein( domain architecture ID 917)

bL32 family ribosomal protein such as Drosophila melanogaster mitochondrial 39S ribosomal protein L32, a component of the mitochondrial large ribosomal subunit, and bacterial 50S ribosomal protein L32

Gene Ontology:  GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_L32p super family cl09115
Ribosomal L32p protein family;
1-27 8.23e-07

Ribosomal L32p protein family;


The actual alignment was detected with superfamily member CHL00152:

Pssm-ID: 471853  Cd Length: 53  Bit Score: 39.24  E-value: 8.23e-07
                        10        20
                ....*....|....*....|....*..
gi 371928607  1 WAALKALSLGKSLSTGNSKSFFVRQTQ 27
Cdd:CHL00152 26 KAALKAFSLAKSLSTGKSKSFFYQQTN 52
 
Name Accession Description Interval E-value
rpl32 CHL00152
ribosomal protein L32; Validated
1-27 8.23e-07

ribosomal protein L32; Validated


Pssm-ID: 214377  Cd Length: 53  Bit Score: 39.24  E-value: 8.23e-07
                        10        20
                ....*....|....*....|....*..
gi 371928607  1 WAALKALSLGKSLSTGNSKSFFVRQTQ 27
Cdd:CHL00152 26 KAALKAFSLAKSLSTGKSKSFFYQQTN 52
 
Name Accession Description Interval E-value
rpl32 CHL00152
ribosomal protein L32; Validated
1-27 8.23e-07

ribosomal protein L32; Validated


Pssm-ID: 214377  Cd Length: 53  Bit Score: 39.24  E-value: 8.23e-07
                        10        20
                ....*....|....*....|....*..
gi 371928607  1 WAALKALSLGKSLSTGNSKSFFVRQTQ 27
Cdd:CHL00152 26 KAALKAFSLAKSLSTGKSKSFFYQQTN 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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