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Conserved domains on  [gi|349624633|gb|AEQ02727|]
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cytochrome b, partial (mitochondrion) [Gilbertolus maracaiboensis]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 674.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00131  45 ILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVM 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00131 125 MTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETG 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00131 205 SNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFLI 320
Cdd:MTH00131 285 PNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364

                        330
                 ....*....|
gi 349624633 321 LNPLAGLLDN 330
Cdd:MTH00131 365 LMPLAGWLEN 374
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 674.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00131  45 ILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVM 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00131 125 MTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETG 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00131 205 SNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFLI 320
Cdd:MTH00131 285 PNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364

                        330
                 ....*....|
gi 349624633 321 LNPLAGLLDN 330
Cdd:MTH00131 365 LMPLAGWLEN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-329 2.14e-122

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 356.79  E-value: 2.14e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYlyKE----TWNIGVILL 76
Cdd:COG1290   54 ILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLL 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  77 LLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFH-FLLPFVIVAVTLLHALF 155
Cdd:COG1290  132 LLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWL 211

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 156 LHETGSNNPLG----LNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNllGDPDNFTPANPLVTPPHIKPEWYFL 231
Cdd:COG1290  212 LHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFL 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 232 FAYAILRSIP--NKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVehPYVIIGQI 309
Cdd:COG1290  290 PFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSI 367

                        330       340
                 ....*....|....*....|
gi 349624633 310 ASALYFAIFLILNPLAGLLD 329
Cdd:COG1290  368 NTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-162 6.48e-76

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 231.49  E-value: 6.48e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASY--LYKETWNIGVILLLL 78
Cdd:cd00284   37 ILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLL 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  79 VMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHE 158
Cdd:cd00284  117 TMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHE 196


                 ....
gi 349624633 159 TGSN 162
Cdd:cd00284  197 QGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-160 2.85e-71

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 219.18  E-value: 2.85e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633    1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYA--SYLYKETWNIGVILLLL 78
Cdd:pfam00033  28 ILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   79 VMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHE 158
Cdd:pfam00033 108 TMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHE 187


                  ..
gi 349624633  159 TG 160
Cdd:pfam00033 188 TG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 195-295 1.28e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.12  E-value: 1.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  195 LLALSLFHPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLVPLLHT-SKYQSMMF 273
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFR 125

                          90       100
                  ....*....|....*....|..
gi 349624633  274 RPFSQFMFwvLVADVVVLtWIG 295
Cdd:TIGR01156 126 RPVATTVF--LFGTVVAL-WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 674.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00131  45 ILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVM 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00131 125 MTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETG 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00131 205 SNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFLI 320
Cdd:MTH00131 285 PNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364

                        330
                 ....*....|
gi 349624633 321 LNPLAGLLDN 330
Cdd:MTH00131 365 LMPLAGWLEN 374
CYTB MTH00119
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 642.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00119  46 ILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLM 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00119 126 ATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00119 206 SNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFLI 320
Cdd:MTH00119 286 PNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365

                        330
                 ....*....|
gi 349624633 321 LNPLAGLLDN 330
Cdd:MTH00119 366 LFPLLGALEN 375
CYTB MTH00074
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 617.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00074  46 IITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVM 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00074 126 ATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00074 206 SNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSI 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFLI 320
Cdd:MTH00074 286 PNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFII 365

                        330
                 ....*....|
gi 349624633 321 LNPLAGLLDN 330
Cdd:MTH00074 366 IIPLTGWLEN 375
CYTB MTH00100
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 616.65  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00100  45 ILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVM 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00100 125 ATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETG 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00100 205 SNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSI 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFLI 320
Cdd:MTH00100 285 PNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364

                        330
                 ....*....|
gi 349624633 321 LNPLAGLLDN 330
Cdd:MTH00100 365 LMPIASLIEN 374
CYTB MTH00191
cytochrome b; Provisional
 1-324 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 584.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00191  42 ILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSM 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00191 122 ATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETG 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00191 202 SNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSI 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFLI 320
Cdd:MTH00191 282 PNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361


                 ....
gi 349624633 321 LNPL 324
Cdd:MTH00191 362 LFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-321 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 574.81  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00156  35 IITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVM 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00156 115 ATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTG 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00156 195 SNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSI 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFLI 320
Cdd:MTH00156 275 PNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFII 354


                 .
gi 349624633 321 L 321
Cdd:MTH00156 355 N 355
CYTB MTH00034
cytochrome b; Validated
 1-330 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 549.31  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00034  45 IITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTM 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00034 125 LTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTG 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00034 205 SNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSI 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFLI 320
Cdd:MTH00034 285 PNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364

                        330
                 ....*....|
gi 349624633 321 LNPLAGLLDN 330
Cdd:MTH00034 365 FFPLISYLEN 374
CYTB MTH00145
cytochrome b; Provisional
 1-321 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 547.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00145  46 ILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSM 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00145 126 GTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00145 206 SNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSI 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFLI 320
Cdd:MTH00145 286 PNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLI 365


                 .
gi 349624633 321 L 321
Cdd:MTH00145 366 L 366
CYTB MTH00016
cytochrome b; Validated
 1-330 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 510.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00016  46 ILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTM 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00016 126 ATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00016 206 SNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSI 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFLI 320
Cdd:MTH00016 286 PNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMI 365

                        330
                 ....*....|
gi 349624633 321 LNPLAGLLDN 330
Cdd:MTH00016 366 NPLLMKLWDK 375
CYTB MTH00022
cytochrome b; Validated
 1-330 1.63e-164

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 463.40  E-value: 1.63e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00022  44 IITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTM 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00022 124 ATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDG 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00022 204 SNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSI 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFLI 320
Cdd:MTH00022 284 PNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363

                        330
                 ....*....|
gi 349624633 321 LNPLAGLLDN 330
Cdd:MTH00022 364 LIPLLGELEN 373
CYTB MTH00053
cytochrome b; Provisional
 1-330 2.43e-163

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 460.33  E-value: 2.43e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00053  46 IITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMI 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00053 126 LTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00053 206 SNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSI 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFLI 320
Cdd:MTH00053 286 PNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365

                        330
                 ....*....|
gi 349624633 321 LNPLAGLLDN 330
Cdd:MTH00053 366 LMPLAGYLEN 375
CYTB MTH00224
cytochrome b; Provisional
 1-328 5.68e-157

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 444.36  E-value: 5.68e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00224  46 VLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTM 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00224 126 ATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00224 206 SNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSI 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFlI 320
Cdd:MTH00224 286 PNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYF-I 364


                 ....*...
gi 349624633 321 LNPLAGLL 328
Cdd:MTH00224 365 ISPAISKL 372
CYTB MTH00033
cytochrome b; Provisional
 1-330 3.67e-125

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 363.87  E-value: 3.67e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00033  42 ILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMM 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00033 122 LTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKG 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFH--PNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILR 238
Cdd:MTH00033 202 SNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILR 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 239 SIPNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPV-EHPYVIIGQIASALYFAI 317
Cdd:MTH00033 282 SIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGY 361

                        330
                 ....*....|...
gi 349624633 318 FLILNPLAGLLDN 330
Cdd:MTH00033 362 FLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-329 2.14e-122

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 356.79  E-value: 2.14e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYlyKE----TWNIGVILL 76
Cdd:COG1290   54 ILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLL 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  77 LLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFH-FLLPFVIVAVTLLHALF 155
Cdd:COG1290  132 LLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWL 211

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 156 LHETGSNNPLG----LNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNllGDPDNFTPANPLVTPPHIKPEWYFL 231
Cdd:COG1290  212 LHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFL 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 232 FAYAILRSIP--NKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTWIGGMPVehPYVIIGQI 309
Cdd:COG1290  290 PFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSI 367

                        330       340
                 ....*....|....*....|
gi 349624633 310 ASALYFAIFLILNPLAGLLD 329
Cdd:COG1290  368 NTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-321 8.12e-115

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 336.14  E-value: 8.12e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00086  34 ILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVM 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00086 114 MEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTG 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIaLLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00086 194 STSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAI 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 241 PNKLGGVLALLASILVLFLVPLLHTskYQSMMFRpFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFLI 320
Cdd:MTH00086 273 PNKVLGVIALLMSIVVFYFFIFVNN--YTSCLNK-LNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349


                 .
gi 349624633 321 L 321
Cdd:MTH00086 350 M 350
CYTB MTH00046
cytochrome b; Validated
 1-320 1.09e-84

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 259.53  E-value: 1.09e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKETWNIGVILLLLVM 80
Cdd:MTH00046  36 VLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVM 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  81 MTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHETG 160
Cdd:MTH00046 116 VEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSG 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 161 SNNPLGLNPN-ADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS 239
Cdd:MTH00046 196 SSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRS 275

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 240 IPNKLGGvLALLASILVLFLVPllhTSKYQSMMFRpFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIASALYFAIFL 319
Cdd:MTH00046 276 INSKIGG-LVLVLSFLFFLWVP---TFNGSSVYSV-WRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLF 350


                 .
gi 349624633 320 I 320
Cdd:MTH00046 351 I 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-162 6.48e-76

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 231.49  E-value: 6.48e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASY--LYKETWNIGVILLLL 78
Cdd:cd00284   37 ILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLL 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  79 VMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHE 158
Cdd:cd00284  117 TMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHE 196


                 ....
gi 349624633 159 TGSN 162
Cdd:cd00284  197 QGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-160 2.85e-71

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 219.18  E-value: 2.85e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633    1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYA--SYLYKETWNIGVILLLL 78
Cdd:pfam00033  28 ILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   79 VMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIVAVTLLHALFLHE 158
Cdd:pfam00033 108 TMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHE 187


                  ..
gi 349624633  159 TG 160
Cdd:pfam00033 188 TG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 163-310 4.34e-52

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 168.59  E-value: 4.34e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 163 NPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSLFHPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 242
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 349624633 243 KLGGVLALLASILVLFLVPLLHTSKYQSmMFRPFSQFMFWVLVADVVVLTWIGGMPVEHPYVIIGQIA 310
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
44-209 5.88e-50

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 163.95  E-value: 5.88e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   44 SFFFICIYLHIGRGLYYASYLYKE--TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIW 121
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  122 GGFSVDNATLTRFFAFHF-LLPFVIVAVTLLHALFLHETGSNNPLGLNPNADKISFHPYFAYKDLVGFVIFLIALLALSL 200
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 349624633  201 FHPNLLGDP 209
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
214-314 7.57e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.80  E-value: 7.57e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  214 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLVPLLHTSKYQSMMFRPFSQFMFWVLVADVVVLTW 293
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 349624633  294 IGGMPVEHPYVIIGQIASALY 314
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 1-165 1.76e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 128.29  E-value: 1.76e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRGLYYASYLYKE--TWNIGVILLLL 78
Cdd:PRK03735  56 ILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFV 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  79 VMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFH-FLLPFVIVAVTLLHALFLH 157
Cdd:PRK03735 136 TVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIR 215


                 ....*...
gi 349624633 158 ETGSNNPL 165
Cdd:PRK03735 216 KQGISGPL 223
petB CHL00070
cytochrome b6
 1-165 3.56e-32

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 119.44  E-value: 3.56e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633   1 IATGFFLSMHYTADISTAFSSVAHICRDVNYGWFIRNLHANGASFFFICIYLHIGRglYYASYLYKE----TWNIGVILL 76
Cdd:CHL00070  48 VATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR--VYLTGGFKKprelTWVTGVVLA 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  77 LLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFH-FLLPFVIVAVTLLHALF 155
Cdd:CHL00070 126 VLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLM 205

                        170
                 ....*....|
gi 349624633 156 LHETGSNNPL 165
Cdd:CHL00070 206 IRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 194-295 1.46e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 64.81  E-value: 1.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 194 ALLALSLFHPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLVPLLHT-SKYQSMM 272
Cdd:COG5679   51 LCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPF 125

                         90       100
                 ....*....|....*....|...
gi 349624633 273 FRPFSQFMFwvLVADVVVLtWIG 295
Cdd:COG5679  126 RRPVATAVF--LFGTLVTL-WLG 145
petD CHL00058
cytochrome b6/f complex subunit IV
 198-295 2.30e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 64.25  E-value: 2.30e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633 198 LSLFHPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLVPLL-HTSKYQSMMFRPF 276
Cdd:CHL00058  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPV 128

                         90
                 ....*....|....*....
gi 349624633 277 SQFMFwvlVADVVVLTWIG 295
Cdd:CHL00058 129 ATTVF---LIGTAVALWLG 144
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 195-295 1.28e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.12  E-value: 1.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 349624633  195 LLALSLFHPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLVPLLHT-SKYQSMMF 273
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFR 125

                          90       100
                  ....*....|....*....|..
gi 349624633  274 RPFSQFMFwvLVADVVVLtWIG 295
Cdd:TIGR01156 126 RPVATTVF--LFGTVVAL-WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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