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Conserved domains on  [gi|340807251|gb|AEK71834|]
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hypothetical chloroplast RF2 (plastid) [Trithuria filamentosa]

Protein Classification

Ycf2( domain architecture ID 11414145)

Ycf2 is a DUF825 and AAA (ATPases Associated with various cellular Activities) domain-containing protein of unknown function

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 192-2153 0e+00

Ycf2; Provisional


:

Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 2048.32  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  192 SKDSFVQVPDSSQLKGSSDQSRENFDSISNEDSKYHALINQTEIQQLKERL----------------------------- 242
Cdd:CHL00206  380 TRSSFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYHTLINQREIQQLKERSilwdpsflqterteiesdrfpkclsgyss 459

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  243 ---------------------------PTRPIRYFFSDIESELHLCSNATERFTRDQKLLKKEQEVSFVPSRRSEEKEMV 295
Cdd:CHL00206  460 msrlfterekqmnnhllpeeieeflgnPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIV 539

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  296 DLFKIITYLQNNVSIHPSSSDLGWGMVPKDELDMDSSNKISFWNKNPFLDLFHLF---QKGRYTLDHDLESEERFQEMAD 372
Cdd:CHL00206  540 DIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFhdrNRGGYTLHHDFESEERFQEMAD 619

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  373 LFTLSITQPDLVYHKGFPFSIDSYGLDQKTLLNEVFHSRDESKKKSLLILPPIFDEENESFYRRIRVRISSR---NGLED 449
Cdd:CHL00206  620 LFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRIscgNDLED 699

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  450 PKPKIgvkiVVLASNNIMEAVNQYqyrliRLIRNLIPIQSSTYGSIRNLLNRFY--------FEYGIQ---IGNATLKHI 518
Cdd:CHL00206  700 PKPKI----VVFASNNIMEAVNQY-----RLIRNLIQIQYSTYGYIRNVLNRFFlmnrsdrnFEYGIQrdqIGNDTLNHR 770

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  519 TRIKYrinqhlsnlkkskkkwfdpliliksTINQHLSNLKKSKKEWFDPL--LSRTERSMNRDPHAYRYKWSDGSKNLQE 596
Cdd:CHL00206  771 TIMKY-------------------------TINQHLSNLKKSQKKWFDPLifISRTERSMNRDPDAYRYKWSNGSKNFQE 825

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  597 HLEHFVSEQSD---------RLGEYSIDLTK--NQKHVSEALHCLLSKLgHLFLSKSIRFFSKSLTPFFVSIRAIP--RS 663
Cdd:CHL00206  826 HLEHFVSEQKSrfqvvfdrlRINQYSIDWSEviDKKDLSKSLRFFLSKL-LLFLSKKLLFLSKSLPFFFVSFGNIPihRS 904

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  664 EIHIYELKGPNDPLGNHLLESTGVQIVQLKKLKP---DDPETPRRSKFLINGGRIPAFLFDKIPKWMIDSFHIRKNHRKF 740
Cdd:CHL00206  905 EIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPfllDDHDTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRINRRKS 984

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  741 FDNTDSYFSMIFHDRDNGLNPVKPFHRSSLISSFYKANRLRFLNNPYH---YSNKRFPFYVEKTRIDNSDLTYGQFLTIS 817
Cdd:CHL00206  985 FDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHfcfYCNKRFPFYVEKARINNYDFTYGQFLNIL 1064

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  818 FIRNKVFSLCVGKKKPVFLERDTISPIESQVSDILIPNDFPQSGDERYNLYKSFHFPTRSDPLVDRAIYSIPDISGTPLT 897
Cdd:CHL00206 1065 FIRNKIFSLCGGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLT 1144

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  898 EEEIVNLEGTYCQPLSDMNLSDSEGENLHQYLGFSSNMGLIHTACSEKYFPSRNGKKQSLLLiwiKKCGEILPIDK--ER 975
Cdd:CHL00206 1145 EGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCL---KKCVEKGQMYRtfQR 1221

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  976 DS-------WNPFQTSMQWFLTWTGCNnnpYLLEIFstirsspewvcvwslwvsewsewVSEWSEWVSLLdtigqsflge 1048
Cdd:CHL00206 1222 DSafsilskWNLFQTYMPWFFTSTGWK---YLNLIF-----------------------LDTFSDLLPIL---------- 1265

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1049 kweflldntirhgpSIYEKGLSFFYDISHGSYILWPIVQIPLWKIFtlpSYWNRINEISTKCVQNCFLSEEIIHRKNelP 1128
Cdd:CHL00206 1266 --------------SSSQKFVSIFHDIMHGSDISWRILQKKLGLKL---PQWNLISEISSKCLHNLLLSEEMIHRES--E 1326

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1129 LPLRWTH--RTNAQEFLYSILFLLLVAGYLVGTHLLFVSIVSSELQTEFEKIKSLINPSYSFDLEELLYTYPPPkhKQNS 1206
Cdd:CHL00206 1327 SPLIWTHlrSPNVREFLYSILFLLLVAGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTS--ELNS 1404

                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1207 FWFETL-LVPLGQIVDSLYGIWMFLVFGGKRRGPTYGVKFILIDIVDlilLNINCIligifDFIRMILNPiINGITFLRK 1285
Cdd:CHL00206 1405 FWLKNLfLVALEQLGDSLEEIRGSGGNMLLGGGPAYGVKSIRSKKKY---LNINLI-----DIIDLIPNP-INRITFSRN 1475

                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1286 TRHLSRTSREIHSFISKRRWVNSDWIDDEIESWVATSLLLKEDKKEFLLEYSNVTTEKRIDQILLSLTHSDHLSNNDFGV 1365
Cdd:CHL00206 1476 TRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGY 1555

                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1366 QMIDQPGSIYLRNLVDIHNKSLLNYEFNPSYLAEGRIVLAHSQTILaHSQTILPHSQIVANTEKKPFSLRLVLAPSRGIL 1445
Cdd:CHL00206 1556 QMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCLAERRIFLAHYQTIT-YSQTSCGANSFHFPSHGKPFSLRLALSPSRGIL 1634

                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1446 VLGSIVTGRSYLVKYLARNSYLPFITVCPETFRTDDNQGNWDadyeeakedcyeDDSYEEDSYEEDSYEEgkedsykedg 1525
Cdd:CHL00206 1635 VIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLI------------DDIDIDDSDDIDDSDD---------- 1692

                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1526 sgaleaarlnkdvdweefdaqlrfllnlvaedpfaachdiyngLDIDIDRELQKISDKLTTSLPPYIPPFRITLPFELAK 1605
Cdd:CHL00206 1693 -------------------------------------------IDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAK 1729

                        1530      1540      1550      1560      1570      1580      1590      1600
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1606 AMSPCIIWMPNIHKLYVDESKDLALGLVVNNLRRDCERSSTRDILVIASTSFPQKVDPALIALNRSNTCIKIRRIPILQQ 1685
Cdd:CHL00206 1730 AMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQ 1809

                        1610      1620      1630      1640      1650      1660      1670      1680
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1686 RKHFFILSYAGGCHLEEQMSQspTNGFGSISMASNVRDLVALTNGVLSICIASKKSIIDINTIRLARYRQTWTWRDRLLP 1765
Cdd:CHL00206 1810 RKHFFTLSYTRGFHLEKKMFH--TNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRS 1887

                        1690      1700      1710      1720      1730      1740      1750      1760
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1766 SPR-DLVFYQIGRAVAQHGLVSDCSIDFIYRYLKPESYQEKDFYLSKWYFELGTSVQKLTRFLYLLSCSAGFVAQDLWSV 1844
Cdd:CHL00206 1888 VQDhGILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSL 1967

                        1770      1780      1790      1800      1810      1820      1830      1840
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1845 --PDENKWSTFY-LLEYDAELVHSLLQ--SALVRYPRAE--CSQFDNDhRVRLFLRSEPRNPVDTMEYFADSI------- 1910
Cdd:CHL00206 1968 pgPDEKNGITSYgLVENDSDLVHGLLEveGALVGSSRTEkdCSQFDND-RVTLLLRPEPRNPLDMMQNGSCSIvdqrfly 2046

                        1850      1860      1870      1880      1890      1900      1910      1920
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1911 KADESDFEIpllggwkyRENEQV---KRDKEDLVNQILFAPRLWHPGGNL---LERPEKFRFTYRDRAFRFSSIYHIEE- 1983
Cdd:CHL00206 2047 EKYESEFEE--------GESEGAldpQQIEEDLFNHIVWAPRIWRPWGFLfdcIERPNELGFPYWARSFRGKRIIYDEEd 2118

                        1930      1940      1950      1960      1970      1980      1990      2000
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1984 ---KVEDEFLgpEPAPYQvppYQVPDRSSKGQAFFQQTRFIWDPGDPFFLIFkKAEPFISVFSTRELFGDEEMPRELLIS 2060
Cdd:CHL00206 2119 elqENDSEFL--QSGTMQ---YQTRDRSSKEQGFFRISQFIWDPADPLFFLF-KDQPFVSVFSRREFFADEEMSKGLLTS 2192

                        2010      2020      2030      2040      2050      2060      2070      2080
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 2061 DiwsqlEHPPRTMAERVFvIKKLHEEDWKWVLRNERWVLTNttSSLPN-SFHSNTPSESYQYLSNLFLSnNGRLLKQVEK 2139
Cdd:CHL00206 2193 Q-----TDPPTSIYKRWF-IKNTQEKHFELLIHRQRWLRTN--SSLSNgFFRSNTLSESYQYLSNLFLS-NGTLLDQMTK 2263

                        2090
                  ....*....|....
gi 340807251 2140 TLGRKKFLLPDELK 2153
Cdd:CHL00206 2264 TLLRKRWLFPDEMK 2277
DUF825 super family cl37550
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 48-200 3.39e-68

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam05695:

Pssm-ID: 283375  Cd Length: 1486  Bit Score: 255.36  E-value: 3.39e-68
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251    48 RFKFWIYELRETWRQIKNSHYLLDSWTKFDSVGSFTHIFFHQERFMKLFDLRICSILLSR-----TSNR--TIKGVALLV 120
Cdd:pfam05695    5 QFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRnsqgsTSNRyfTIKGVVLFV 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   121 VAVLIYRINHRNMVERKNLYLMGLLPIPMNSIGPRNDTLEESFGSPNINRLIVSLLHLPKAKKISESCFMDSKDSFVQVP 200
Cdd:pfam05695   85 VAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKESTWVLP 164
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 192-2153 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 2048.32  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  192 SKDSFVQVPDSSQLKGSSDQSRENFDSISNEDSKYHALINQTEIQQLKERL----------------------------- 242
Cdd:CHL00206  380 TRSSFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYHTLINQREIQQLKERSilwdpsflqterteiesdrfpkclsgyss 459

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  243 ---------------------------PTRPIRYFFSDIESELHLCSNATERFTRDQKLLKKEQEVSFVPSRRSEEKEMV 295
Cdd:CHL00206  460 msrlfterekqmnnhllpeeieeflgnPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIV 539

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  296 DLFKIITYLQNNVSIHPSSSDLGWGMVPKDELDMDSSNKISFWNKNPFLDLFHLF---QKGRYTLDHDLESEERFQEMAD 372
Cdd:CHL00206  540 DIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFhdrNRGGYTLHHDFESEERFQEMAD 619

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  373 LFTLSITQPDLVYHKGFPFSIDSYGLDQKTLLNEVFHSRDESKKKSLLILPPIFDEENESFYRRIRVRISSR---NGLED 449
Cdd:CHL00206  620 LFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRIscgNDLED 699

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  450 PKPKIgvkiVVLASNNIMEAVNQYqyrliRLIRNLIPIQSSTYGSIRNLLNRFY--------FEYGIQ---IGNATLKHI 518
Cdd:CHL00206  700 PKPKI----VVFASNNIMEAVNQY-----RLIRNLIQIQYSTYGYIRNVLNRFFlmnrsdrnFEYGIQrdqIGNDTLNHR 770

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  519 TRIKYrinqhlsnlkkskkkwfdpliliksTINQHLSNLKKSKKEWFDPL--LSRTERSMNRDPHAYRYKWSDGSKNLQE 596
Cdd:CHL00206  771 TIMKY-------------------------TINQHLSNLKKSQKKWFDPLifISRTERSMNRDPDAYRYKWSNGSKNFQE 825

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  597 HLEHFVSEQSD---------RLGEYSIDLTK--NQKHVSEALHCLLSKLgHLFLSKSIRFFSKSLTPFFVSIRAIP--RS 663
Cdd:CHL00206  826 HLEHFVSEQKSrfqvvfdrlRINQYSIDWSEviDKKDLSKSLRFFLSKL-LLFLSKKLLFLSKSLPFFFVSFGNIPihRS 904

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  664 EIHIYELKGPNDPLGNHLLESTGVQIVQLKKLKP---DDPETPRRSKFLINGGRIPAFLFDKIPKWMIDSFHIRKNHRKF 740
Cdd:CHL00206  905 EIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPfllDDHDTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRINRRKS 984

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  741 FDNTDSYFSMIFHDRDNGLNPVKPFHRSSLISSFYKANRLRFLNNPYH---YSNKRFPFYVEKTRIDNSDLTYGQFLTIS 817
Cdd:CHL00206  985 FDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHfcfYCNKRFPFYVEKARINNYDFTYGQFLNIL 1064

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  818 FIRNKVFSLCVGKKKPVFLERDTISPIESQVSDILIPNDFPQSGDERYNLYKSFHFPTRSDPLVDRAIYSIPDISGTPLT 897
Cdd:CHL00206 1065 FIRNKIFSLCGGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLT 1144

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  898 EEEIVNLEGTYCQPLSDMNLSDSEGENLHQYLGFSSNMGLIHTACSEKYFPSRNGKKQSLLLiwiKKCGEILPIDK--ER 975
Cdd:CHL00206 1145 EGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCL---KKCVEKGQMYRtfQR 1221

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  976 DS-------WNPFQTSMQWFLTWTGCNnnpYLLEIFstirsspewvcvwslwvsewsewVSEWSEWVSLLdtigqsflge 1048
Cdd:CHL00206 1222 DSafsilskWNLFQTYMPWFFTSTGWK---YLNLIF-----------------------LDTFSDLLPIL---------- 1265

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1049 kweflldntirhgpSIYEKGLSFFYDISHGSYILWPIVQIPLWKIFtlpSYWNRINEISTKCVQNCFLSEEIIHRKNelP 1128
Cdd:CHL00206 1266 --------------SSSQKFVSIFHDIMHGSDISWRILQKKLGLKL---PQWNLISEISSKCLHNLLLSEEMIHRES--E 1326

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1129 LPLRWTH--RTNAQEFLYSILFLLLVAGYLVGTHLLFVSIVSSELQTEFEKIKSLINPSYSFDLEELLYTYPPPkhKQNS 1206
Cdd:CHL00206 1327 SPLIWTHlrSPNVREFLYSILFLLLVAGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTS--ELNS 1404

                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1207 FWFETL-LVPLGQIVDSLYGIWMFLVFGGKRRGPTYGVKFILIDIVDlilLNINCIligifDFIRMILNPiINGITFLRK 1285
Cdd:CHL00206 1405 FWLKNLfLVALEQLGDSLEEIRGSGGNMLLGGGPAYGVKSIRSKKKY---LNINLI-----DIIDLIPNP-INRITFSRN 1475

                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1286 TRHLSRTSREIHSFISKRRWVNSDWIDDEIESWVATSLLLKEDKKEFLLEYSNVTTEKRIDQILLSLTHSDHLSNNDFGV 1365
Cdd:CHL00206 1476 TRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGY 1555

                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1366 QMIDQPGSIYLRNLVDIHNKSLLNYEFNPSYLAEGRIVLAHSQTILaHSQTILPHSQIVANTEKKPFSLRLVLAPSRGIL 1445
Cdd:CHL00206 1556 QMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCLAERRIFLAHYQTIT-YSQTSCGANSFHFPSHGKPFSLRLALSPSRGIL 1634

                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1446 VLGSIVTGRSYLVKYLARNSYLPFITVCPETFRTDDNQGNWDadyeeakedcyeDDSYEEDSYEEDSYEEgkedsykedg 1525
Cdd:CHL00206 1635 VIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLI------------DDIDIDDSDDIDDSDD---------- 1692

                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1526 sgaleaarlnkdvdweefdaqlrfllnlvaedpfaachdiyngLDIDIDRELQKISDKLTTSLPPYIPPFRITLPFELAK 1605
Cdd:CHL00206 1693 -------------------------------------------IDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAK 1729

                        1530      1540      1550      1560      1570      1580      1590      1600
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1606 AMSPCIIWMPNIHKLYVDESKDLALGLVVNNLRRDCERSSTRDILVIASTSFPQKVDPALIALNRSNTCIKIRRIPILQQ 1685
Cdd:CHL00206 1730 AMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQ 1809

                        1610      1620      1630      1640      1650      1660      1670      1680
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1686 RKHFFILSYAGGCHLEEQMSQspTNGFGSISMASNVRDLVALTNGVLSICIASKKSIIDINTIRLARYRQTWTWRDRLLP 1765
Cdd:CHL00206 1810 RKHFFTLSYTRGFHLEKKMFH--TNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRS 1887

                        1690      1700      1710      1720      1730      1740      1750      1760
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1766 SPR-DLVFYQIGRAVAQHGLVSDCSIDFIYRYLKPESYQEKDFYLSKWYFELGTSVQKLTRFLYLLSCSAGFVAQDLWSV 1844
Cdd:CHL00206 1888 VQDhGILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSL 1967

                        1770      1780      1790      1800      1810      1820      1830      1840
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1845 --PDENKWSTFY-LLEYDAELVHSLLQ--SALVRYPRAE--CSQFDNDhRVRLFLRSEPRNPVDTMEYFADSI------- 1910
Cdd:CHL00206 1968 pgPDEKNGITSYgLVENDSDLVHGLLEveGALVGSSRTEkdCSQFDND-RVTLLLRPEPRNPLDMMQNGSCSIvdqrfly 2046

                        1850      1860      1870      1880      1890      1900      1910      1920
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1911 KADESDFEIpllggwkyRENEQV---KRDKEDLVNQILFAPRLWHPGGNL---LERPEKFRFTYRDRAFRFSSIYHIEE- 1983
Cdd:CHL00206 2047 EKYESEFEE--------GESEGAldpQQIEEDLFNHIVWAPRIWRPWGFLfdcIERPNELGFPYWARSFRGKRIIYDEEd 2118

                        1930      1940      1950      1960      1970      1980      1990      2000
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1984 ---KVEDEFLgpEPAPYQvppYQVPDRSSKGQAFFQQTRFIWDPGDPFFLIFkKAEPFISVFSTRELFGDEEMPRELLIS 2060
Cdd:CHL00206 2119 elqENDSEFL--QSGTMQ---YQTRDRSSKEQGFFRISQFIWDPADPLFFLF-KDQPFVSVFSRREFFADEEMSKGLLTS 2192

                        2010      2020      2030      2040      2050      2060      2070      2080
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 2061 DiwsqlEHPPRTMAERVFvIKKLHEEDWKWVLRNERWVLTNttSSLPN-SFHSNTPSESYQYLSNLFLSnNGRLLKQVEK 2139
Cdd:CHL00206 2193 Q-----TDPPTSIYKRWF-IKNTQEKHFELLIHRQRWLRTN--SSLSNgFFRSNTLSESYQYLSNLFLS-NGTLLDQMTK 2263

                        2090
                  ....*....|....
gi 340807251 2140 TLGRKKFLLPDELK 2153
Cdd:CHL00206 2264 TLLRKRWLFPDEMK 2277
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 180-1293 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 1326.22  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   180 KAKKISESCFMDS-KDSFVQVPDSSQLKGSSDQSRENFDSISNEDSKYHALINQTEIQQLKERL---------------- 242
Cdd:pfam05695  367 KVRNVSSNIQYDStRSSFVQVTDSSQLKGSSDQSRDHFDSISNEDSKYHTLINQREIQQLKERSilwdpsflqterteie 446

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   243 ----------------------------------------PTRPIRYFFSDIESELHLCSNATERFTRDQKLLKKEQEVS 282
Cdd:pfam05695  447 sdrfpkclsgyssmsrlfterekqmnnhllpeeieeflgnPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVS 526

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   283 FVPSRRSEEKEMVDLFKIITYLQNNVSIHPSSSDLGWGMVPKDELDMDSSNKISFWNKNPFLDLFHLFQ---KGRYTLDH 359
Cdd:pfam05695  527 FVPSRRSENKEMVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHdrnSGGYTLHH 606

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   360 DLESEERFQEMADLFTLSITQPDLVYHKGFPFSIDSYGLDQKTLLNEVFHSRDESKKKSLLILPPIFDEENESFYRRIRV 439
Cdd:pfam05695  607 DFESEERFQEMADLFTLSITEPDLVYHKGFAFSIDSYGLDQKHFLNEVFNSRDESKKKSLLVLPPLFYEENESFYRRIRK 686

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   440 RISSR---NGLEDPKPKIgvkiVVLASNNIMEAVNQYqyrliRLIRNLIPIQSSTYGSIRNLLNRFY--------FEYGI 508
Cdd:pfam05695  687 KWVRIscgNNLEDPKPKI----VVFASNNIMEAVNQY-----RLIRNLIQIQYSTYGYIRNVLNRFFlmnrsdrnFEYGI 757

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   509 Q---IGNATLKHITRIKYrinqhlsnlkkskkkwfdpliliksTINQHLSNLKKSKKEWFDPL--LSRTERSMNRDPHAY 583
Cdd:pfam05695  758 QrdqIGNDTLNHRTIMKY-------------------------TINQHLSNLKKSQKKWFDPLifISRTERSMNRDPNAY 812

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   584 RYKWSDGSKNLQEHLEHFVSEQSDR---------LGEYSIDLTK--NQKHVSEALHCLLSKLgHLFLSKSIRFFSKSLTP 652
Cdd:pfam05695  813 RYKWSNGSKNFQEHLEHFVSEQKSRfqvvfdrlrINQYSIDWSEviDKKDLSKSLRFFLSKS-LLFLSKFLLFLSNSLPF 891

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   653 FFVSIRAIP--RSEIHIYELKGPNDPLGNHLLESTGVQIVQLKKLKP---DDPETPRRSKFLINGGRIPAFLFDKIPKWM 727
Cdd:pfam05695  892 FFVSFGNIPihRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPfllDDHDTSQKSKFLINGGTISPFLFNKIPKWM 971

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   728 IDSFHIRKNHRKFFDNTDSYFSMIFHDRDNGLNPVKPFHRSSLISSFYKANRLRFLNNPYH---YSNKRFPFYVEKTRID 804
Cdd:pfam05695  972 IDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHfcfYCNKRFPFYVEKARIN 1051

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   805 NSDLTYGQFLTISFIRNKVFSLCVGKKKPVFLERDTISPIESQVSDILIPNDFPQSGDERYNLYKSFHFPTRSDPLVDRA 884
Cdd:pfam05695 1052 NYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHFPIRSDPFVRRA 1131

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   885 IYSIPDISGTPLTEEEIVNLEGTYCQPLSDMNLSDSEGENLHQYLGFSSNMGLIHTACSEKYFPSRNGKKQSLLLiwiKK 964
Cdd:pfam05695 1132 IYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCL---KK 1208

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   965 CGEILPIDK--ERDS-------WNPFQTSMQWFLTWTGCNN-NPYLLEIFStirsspewvcvwslwvsewsewvsewsew 1034
Cdd:pfam05695 1209 CVEKGQMYRtfQRDSafstlskWNLFQTYMPWFLTSTGYKYlNFIFLDTFS----------------------------- 1259

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  1035 vSLLDTIGQSflgekweflldntirhgpsiyEKGLSFFYDISHGSYILWPIVQIPLwkifTLPSyWNRINEISTKCVQNC 1114
Cdd:pfam05695 1260 -DLLPILSSS---------------------QKFVSIFHDIMHGSDILWRIRQKKL----CLPQ-WNLISEISSKCLHNL 1312

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  1115 FLSEEIIHRKNELPLPlrWTH--RTNAQEFLYSILFLLLVAGYLVGTHLLFVSIVSSELQTEFEKIKSLINPSYSFDLEE 1192
Cdd:pfam05695 1313 LLSEEMIHRNNESPLI--STHlrSPNVREFFYSILFLLLVAGYLVRTHLLFVSRVSSELQTEFEKVKSLMIPSYMIELRK 1390

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  1193 LLYTYPPPkhKQNSFWFETL-LVPLGQIVDSLYGIWMF-----LVFGGkrrGPTYGVKFILIDIVDlilLNINciLIGIF 1266
Cdd:pfam05695 1391 LLDRYPTS--ELNSFWLKNLfLVALEQLGDSLEEIRGSasggnMLLGG---GPAYGVKSIRSKKKY---LNIN--LIDII 1460

                         1210      1220
                   ....*....|....*....|....*..
gi 340807251  1267 DFIRMILNPiINGITFLRKTRHLSRTS 1293
Cdd:pfam05695 1461 DLISIIPNP-INRITFSRNTRHLSHTS 1486
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 48-200 3.39e-68

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 255.36  E-value: 3.39e-68
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251    48 RFKFWIYELRETWRQIKNSHYLLDSWTKFDSVGSFTHIFFHQERFMKLFDLRICSILLSR-----TSNR--TIKGVALLV 120
Cdd:pfam05695    5 QFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRnsqgsTSNRyfTIKGVVLFV 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   121 VAVLIYRINHRNMVERKNLYLMGLLPIPMNSIGPRNDTLEESFGSPNINRLIVSLLHLPKAKKISESCFMDSKDSFVQVP 200
Cdd:pfam05695   85 VAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKESTWVLP 164
ycf2 CHL00206
Ycf2; Provisional
 49-200 2.48e-66

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 250.60  E-value: 2.48e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   49 FKFWIYELRETWRQIKNSHYLLDSWTKFDSVGSFTHIFFHQERFMKLFDLRICSILLSR-----TSNR--TIKGVALLVV 121
Cdd:CHL00206    6 FKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRnsqgsTSNRyfTIKGVVLLVV 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 340807251  122 AVLIYRINHRNMVERKNLYLMGLLPIPMNSIGPRNDTLEESFGSPNINRLIVSLLHLPKAKKISESCFMDSKDSFVQVP 200
Cdd:CHL00206   86 AVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKESTWVLP 164
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 1430-1677 9.94e-48

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 168.32  E-value: 9.94e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1430 KPFSLRLVLAPSRGILVLGSIVTGRSYLVKYLARNSYLPFITVCPETFRTDDNQGNWDadyeeakedcyeddsyeedsye 1509
Cdd:cd19505     1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLIRISLNKLLYNKPDFGND---------------------- 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1510 edsyeegkedsykedgsgaleaarlnkdvDWEefdaqlrfllnlvaedpfaachdiyNGLDIDIDRElqkisdklttslp 1589
Cdd:cd19505    59 -----------------------------DWI-------------------------DGMLILKESL------------- 71

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1590 pyippFRITLPFELAKAMSPCIIWMPNIHKLYVD-------ESKDLALGLVVNNLRRDCERSSTRDILVIASTSFPQKVD 1662
Cdd:cd19505    72 -----HRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLGLLLNYLSRDFEKSSTRNILVIASTHIPQKVD 146

                         250
                  ....*....|....*
gi 340807251 1663 PALIALNRSNTCIKI 1677
Cdd:cd19505   147 PALIAPNRLDTCINI 161
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 192-2153 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 2048.32  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  192 SKDSFVQVPDSSQLKGSSDQSRENFDSISNEDSKYHALINQTEIQQLKERL----------------------------- 242
Cdd:CHL00206  380 TRSSFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYHTLINQREIQQLKERSilwdpsflqterteiesdrfpkclsgyss 459

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  243 ---------------------------PTRPIRYFFSDIESELHLCSNATERFTRDQKLLKKEQEVSFVPSRRSEEKEMV 295
Cdd:CHL00206  460 msrlfterekqmnnhllpeeieeflgnPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIV 539

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  296 DLFKIITYLQNNVSIHPSSSDLGWGMVPKDELDMDSSNKISFWNKNPFLDLFHLF---QKGRYTLDHDLESEERFQEMAD 372
Cdd:CHL00206  540 DIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFhdrNRGGYTLHHDFESEERFQEMAD 619

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  373 LFTLSITQPDLVYHKGFPFSIDSYGLDQKTLLNEVFHSRDESKKKSLLILPPIFDEENESFYRRIRVRISSR---NGLED 449
Cdd:CHL00206  620 LFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRIscgNDLED 699

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  450 PKPKIgvkiVVLASNNIMEAVNQYqyrliRLIRNLIPIQSSTYGSIRNLLNRFY--------FEYGIQ---IGNATLKHI 518
Cdd:CHL00206  700 PKPKI----VVFASNNIMEAVNQY-----RLIRNLIQIQYSTYGYIRNVLNRFFlmnrsdrnFEYGIQrdqIGNDTLNHR 770

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  519 TRIKYrinqhlsnlkkskkkwfdpliliksTINQHLSNLKKSKKEWFDPL--LSRTERSMNRDPHAYRYKWSDGSKNLQE 596
Cdd:CHL00206  771 TIMKY-------------------------TINQHLSNLKKSQKKWFDPLifISRTERSMNRDPDAYRYKWSNGSKNFQE 825

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  597 HLEHFVSEQSD---------RLGEYSIDLTK--NQKHVSEALHCLLSKLgHLFLSKSIRFFSKSLTPFFVSIRAIP--RS 663
Cdd:CHL00206  826 HLEHFVSEQKSrfqvvfdrlRINQYSIDWSEviDKKDLSKSLRFFLSKL-LLFLSKKLLFLSKSLPFFFVSFGNIPihRS 904

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  664 EIHIYELKGPNDPLGNHLLESTGVQIVQLKKLKP---DDPETPRRSKFLINGGRIPAFLFDKIPKWMIDSFHIRKNHRKF 740
Cdd:CHL00206  905 EIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPfllDDHDTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRINRRKS 984

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  741 FDNTDSYFSMIFHDRDNGLNPVKPFHRSSLISSFYKANRLRFLNNPYH---YSNKRFPFYVEKTRIDNSDLTYGQFLTIS 817
Cdd:CHL00206  985 FDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHfcfYCNKRFPFYVEKARINNYDFTYGQFLNIL 1064

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  818 FIRNKVFSLCVGKKKPVFLERDTISPIESQVSDILIPNDFPQSGDERYNLYKSFHFPTRSDPLVDRAIYSIPDISGTPLT 897
Cdd:CHL00206 1065 FIRNKIFSLCGGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLT 1144

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  898 EEEIVNLEGTYCQPLSDMNLSDSEGENLHQYLGFSSNMGLIHTACSEKYFPSRNGKKQSLLLiwiKKCGEILPIDK--ER 975
Cdd:CHL00206 1145 EGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCL---KKCVEKGQMYRtfQR 1221

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  976 DS-------WNPFQTSMQWFLTWTGCNnnpYLLEIFstirsspewvcvwslwvsewsewVSEWSEWVSLLdtigqsflge 1048
Cdd:CHL00206 1222 DSafsilskWNLFQTYMPWFFTSTGWK---YLNLIF-----------------------LDTFSDLLPIL---------- 1265

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1049 kweflldntirhgpSIYEKGLSFFYDISHGSYILWPIVQIPLWKIFtlpSYWNRINEISTKCVQNCFLSEEIIHRKNelP 1128
Cdd:CHL00206 1266 --------------SSSQKFVSIFHDIMHGSDISWRILQKKLGLKL---PQWNLISEISSKCLHNLLLSEEMIHRES--E 1326

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1129 LPLRWTH--RTNAQEFLYSILFLLLVAGYLVGTHLLFVSIVSSELQTEFEKIKSLINPSYSFDLEELLYTYPPPkhKQNS 1206
Cdd:CHL00206 1327 SPLIWTHlrSPNVREFLYSILFLLLVAGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTS--ELNS 1404

                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1207 FWFETL-LVPLGQIVDSLYGIWMFLVFGGKRRGPTYGVKFILIDIVDlilLNINCIligifDFIRMILNPiINGITFLRK 1285
Cdd:CHL00206 1405 FWLKNLfLVALEQLGDSLEEIRGSGGNMLLGGGPAYGVKSIRSKKKY---LNINLI-----DIIDLIPNP-INRITFSRN 1475

                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1286 TRHLSRTSREIHSFISKRRWVNSDWIDDEIESWVATSLLLKEDKKEFLLEYSNVTTEKRIDQILLSLTHSDHLSNNDFGV 1365
Cdd:CHL00206 1476 TRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGY 1555

                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1366 QMIDQPGSIYLRNLVDIHNKSLLNYEFNPSYLAEGRIVLAHSQTILaHSQTILPHSQIVANTEKKPFSLRLVLAPSRGIL 1445
Cdd:CHL00206 1556 QMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCLAERRIFLAHYQTIT-YSQTSCGANSFHFPSHGKPFSLRLALSPSRGIL 1634

                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1446 VLGSIVTGRSYLVKYLARNSYLPFITVCPETFRTDDNQGNWDadyeeakedcyeDDSYEEDSYEEDSYEEgkedsykedg 1525
Cdd:CHL00206 1635 VIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLI------------DDIDIDDSDDIDDSDD---------- 1692

                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1526 sgaleaarlnkdvdweefdaqlrfllnlvaedpfaachdiyngLDIDIDRELQKISDKLTTSLPPYIPPFRITLPFELAK 1605
Cdd:CHL00206 1693 -------------------------------------------IDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAK 1729

                        1530      1540      1550      1560      1570      1580      1590      1600
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1606 AMSPCIIWMPNIHKLYVDESKDLALGLVVNNLRRDCERSSTRDILVIASTSFPQKVDPALIALNRSNTCIKIRRIPILQQ 1685
Cdd:CHL00206 1730 AMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQ 1809

                        1610      1620      1630      1640      1650      1660      1670      1680
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1686 RKHFFILSYAGGCHLEEQMSQspTNGFGSISMASNVRDLVALTNGVLSICIASKKSIIDINTIRLARYRQTWTWRDRLLP 1765
Cdd:CHL00206 1810 RKHFFTLSYTRGFHLEKKMFH--TNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRS 1887

                        1690      1700      1710      1720      1730      1740      1750      1760
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1766 SPR-DLVFYQIGRAVAQHGLVSDCSIDFIYRYLKPESYQEKDFYLSKWYFELGTSVQKLTRFLYLLSCSAGFVAQDLWSV 1844
Cdd:CHL00206 1888 VQDhGILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSL 1967

                        1770      1780      1790      1800      1810      1820      1830      1840
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1845 --PDENKWSTFY-LLEYDAELVHSLLQ--SALVRYPRAE--CSQFDNDhRVRLFLRSEPRNPVDTMEYFADSI------- 1910
Cdd:CHL00206 1968 pgPDEKNGITSYgLVENDSDLVHGLLEveGALVGSSRTEkdCSQFDND-RVTLLLRPEPRNPLDMMQNGSCSIvdqrfly 2046

                        1850      1860      1870      1880      1890      1900      1910      1920
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1911 KADESDFEIpllggwkyRENEQV---KRDKEDLVNQILFAPRLWHPGGNL---LERPEKFRFTYRDRAFRFSSIYHIEE- 1983
Cdd:CHL00206 2047 EKYESEFEE--------GESEGAldpQQIEEDLFNHIVWAPRIWRPWGFLfdcIERPNELGFPYWARSFRGKRIIYDEEd 2118

                        1930      1940      1950      1960      1970      1980      1990      2000
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1984 ---KVEDEFLgpEPAPYQvppYQVPDRSSKGQAFFQQTRFIWDPGDPFFLIFkKAEPFISVFSTRELFGDEEMPRELLIS 2060
Cdd:CHL00206 2119 elqENDSEFL--QSGTMQ---YQTRDRSSKEQGFFRISQFIWDPADPLFFLF-KDQPFVSVFSRREFFADEEMSKGLLTS 2192

                        2010      2020      2030      2040      2050      2060      2070      2080
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 2061 DiwsqlEHPPRTMAERVFvIKKLHEEDWKWVLRNERWVLTNttSSLPN-SFHSNTPSESYQYLSNLFLSnNGRLLKQVEK 2139
Cdd:CHL00206 2193 Q-----TDPPTSIYKRWF-IKNTQEKHFELLIHRQRWLRTN--SSLSNgFFRSNTLSESYQYLSNLFLS-NGTLLDQMTK 2263

                        2090
                  ....*....|....
gi 340807251 2140 TLGRKKFLLPDELK 2153
Cdd:CHL00206 2264 TLLRKRWLFPDEMK 2277
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 180-1293 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 1326.22  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   180 KAKKISESCFMDS-KDSFVQVPDSSQLKGSSDQSRENFDSISNEDSKYHALINQTEIQQLKERL---------------- 242
Cdd:pfam05695  367 KVRNVSSNIQYDStRSSFVQVTDSSQLKGSSDQSRDHFDSISNEDSKYHTLINQREIQQLKERSilwdpsflqterteie 446

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   243 ----------------------------------------PTRPIRYFFSDIESELHLCSNATERFTRDQKLLKKEQEVS 282
Cdd:pfam05695  447 sdrfpkclsgyssmsrlfterekqmnnhllpeeieeflgnPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVS 526

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   283 FVPSRRSEEKEMVDLFKIITYLQNNVSIHPSSSDLGWGMVPKDELDMDSSNKISFWNKNPFLDLFHLFQ---KGRYTLDH 359
Cdd:pfam05695  527 FVPSRRSENKEMVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHdrnSGGYTLHH 606

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   360 DLESEERFQEMADLFTLSITQPDLVYHKGFPFSIDSYGLDQKTLLNEVFHSRDESKKKSLLILPPIFDEENESFYRRIRV 439
Cdd:pfam05695  607 DFESEERFQEMADLFTLSITEPDLVYHKGFAFSIDSYGLDQKHFLNEVFNSRDESKKKSLLVLPPLFYEENESFYRRIRK 686

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   440 RISSR---NGLEDPKPKIgvkiVVLASNNIMEAVNQYqyrliRLIRNLIPIQSSTYGSIRNLLNRFY--------FEYGI 508
Cdd:pfam05695  687 KWVRIscgNNLEDPKPKI----VVFASNNIMEAVNQY-----RLIRNLIQIQYSTYGYIRNVLNRFFlmnrsdrnFEYGI 757

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   509 Q---IGNATLKHITRIKYrinqhlsnlkkskkkwfdpliliksTINQHLSNLKKSKKEWFDPL--LSRTERSMNRDPHAY 583
Cdd:pfam05695  758 QrdqIGNDTLNHRTIMKY-------------------------TINQHLSNLKKSQKKWFDPLifISRTERSMNRDPNAY 812

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   584 RYKWSDGSKNLQEHLEHFVSEQSDR---------LGEYSIDLTK--NQKHVSEALHCLLSKLgHLFLSKSIRFFSKSLTP 652
Cdd:pfam05695  813 RYKWSNGSKNFQEHLEHFVSEQKSRfqvvfdrlrINQYSIDWSEviDKKDLSKSLRFFLSKS-LLFLSKFLLFLSNSLPF 891

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   653 FFVSIRAIP--RSEIHIYELKGPNDPLGNHLLESTGVQIVQLKKLKP---DDPETPRRSKFLINGGRIPAFLFDKIPKWM 727
Cdd:pfam05695  892 FFVSFGNIPihRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPfllDDHDTSQKSKFLINGGTISPFLFNKIPKWM 971

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   728 IDSFHIRKNHRKFFDNTDSYFSMIFHDRDNGLNPVKPFHRSSLISSFYKANRLRFLNNPYH---YSNKRFPFYVEKTRID 804
Cdd:pfam05695  972 IDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHfcfYCNKRFPFYVEKARIN 1051

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   805 NSDLTYGQFLTISFIRNKVFSLCVGKKKPVFLERDTISPIESQVSDILIPNDFPQSGDERYNLYKSFHFPTRSDPLVDRA 884
Cdd:pfam05695 1052 NYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSFHFPIRSDPFVRRA 1131

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   885 IYSIPDISGTPLTEEEIVNLEGTYCQPLSDMNLSDSEGENLHQYLGFSSNMGLIHTACSEKYFPSRNGKKQSLLLiwiKK 964
Cdd:pfam05695 1132 IYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCL---KK 1208

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   965 CGEILPIDK--ERDS-------WNPFQTSMQWFLTWTGCNN-NPYLLEIFStirsspewvcvwslwvsewsewvsewsew 1034
Cdd:pfam05695 1209 CVEKGQMYRtfQRDSafstlskWNLFQTYMPWFLTSTGYKYlNFIFLDTFS----------------------------- 1259

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  1035 vSLLDTIGQSflgekweflldntirhgpsiyEKGLSFFYDISHGSYILWPIVQIPLwkifTLPSyWNRINEISTKCVQNC 1114
Cdd:pfam05695 1260 -DLLPILSSS---------------------QKFVSIFHDIMHGSDILWRIRQKKL----CLPQ-WNLISEISSKCLHNL 1312

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  1115 FLSEEIIHRKNELPLPlrWTH--RTNAQEFLYSILFLLLVAGYLVGTHLLFVSIVSSELQTEFEKIKSLINPSYSFDLEE 1192
Cdd:pfam05695 1313 LLSEEMIHRNNESPLI--STHlrSPNVREFFYSILFLLLVAGYLVRTHLLFVSRVSSELQTEFEKVKSLMIPSYMIELRK 1390

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251  1193 LLYTYPPPkhKQNSFWFETL-LVPLGQIVDSLYGIWMF-----LVFGGkrrGPTYGVKFILIDIVDlilLNINciLIGIF 1266
Cdd:pfam05695 1391 LLDRYPTS--ELNSFWLKNLfLVALEQLGDSLEEIRGSasggnMLLGG---GPAYGVKSIRSKKKY---LNIN--LIDII 1460

                         1210      1220
                   ....*....|....*....|....*..
gi 340807251  1267 DFIRMILNPiINGITFLRKTRHLSRTS 1293
Cdd:pfam05695 1461 DLISIIPNP-INRITFSRNTRHLSHTS 1486
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 48-200 3.39e-68

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 255.36  E-value: 3.39e-68
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251    48 RFKFWIYELRETWRQIKNSHYLLDSWTKFDSVGSFTHIFFHQERFMKLFDLRICSILLSR-----TSNR--TIKGVALLV 120
Cdd:pfam05695    5 QFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRnsqgsTSNRyfTIKGVVLFV 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   121 VAVLIYRINHRNMVERKNLYLMGLLPIPMNSIGPRNDTLEESFGSPNINRLIVSLLHLPKAKKISESCFMDSKDSFVQVP 200
Cdd:pfam05695   85 VAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKESTWVLP 164
ycf2 CHL00206
Ycf2; Provisional
 49-200 2.48e-66

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 250.60  E-value: 2.48e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251   49 FKFWIYELRETWRQIKNSHYLLDSWTKFDSVGSFTHIFFHQERFMKLFDLRICSILLSR-----TSNR--TIKGVALLVV 121
Cdd:CHL00206    6 FKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRnsqgsTSNRyfTIKGVVLLVV 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 340807251  122 AVLIYRINHRNMVERKNLYLMGLLPIPMNSIGPRNDTLEESFGSPNINRLIVSLLHLPKAKKISESCFMDSKDSFVQVP 200
Cdd:CHL00206   86 AVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKESTWVLP 164
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 1430-1677 9.94e-48

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 168.32  E-value: 9.94e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1430 KPFSLRLVLAPSRGILVLGSIVTGRSYLVKYLARNSYLPFITVCPETFRTDDNQGNWDadyeeakedcyeddsyeedsye 1509
Cdd:cd19505     1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLIRISLNKLLYNKPDFGND---------------------- 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1510 edsyeegkedsykedgsgaleaarlnkdvDWEefdaqlrfllnlvaedpfaachdiyNGLDIDIDRElqkisdklttslp 1589
Cdd:cd19505    59 -----------------------------DWI-------------------------DGMLILKESL------------- 71

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340807251 1590 pyippFRITLPFELAKAMSPCIIWMPNIHKLYVD-------ESKDLALGLVVNNLRRDCERSSTRDILVIASTSFPQKVD 1662
Cdd:cd19505    72 -----HRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLGLLLNYLSRDFEKSSTRNILVIASTHIPQKVD 146

                         250
                  ....*....|....*
gi 340807251 1663 PALIALNRSNTCIKI 1677
Cdd:cd19505   147 PALIAPNRLDTCINI 161
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 1596-1666 9.43e-07

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 49.90  E-value: 9.43e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 340807251  1596 RITLPFELAKAMSPCIIWMPNIHKLY--VDESKDLALGLVVNNLRR--DCERSSTRDILVIASTSFPQKVDPALI 1666
Cdd:pfam00004   45 RLRELFEAAKKLAPCVIFIDEIDALAgsRGSGGDSESRRVVNQLLTelDGFTSSNSKVIVIAATNRPDKLDPALL 119
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
 1601-1670 1.43e-06

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 49.97  E-value: 1.43e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 340807251 1601 FELAKAMSPCIIWMPNIHKLYVD---ESKDLALGLVVNNLRRDCER-SSTRDILVIASTSFPQKVDPALIALNR 1670
Cdd:cd19481    78 FERARRLAPCILFIDEIDAIGRKrdsSGESGELRRVLNQLLTELDGvNSRSKVLVIAATNRPDLLDPALLRPGR 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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