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Conserved domains on  [gi|340525413|gb|AEK40618|]
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lipoate-protein ligase A [Amycolatopsis mediterranei S699]

Protein Classification

lipoate--protein ligase family protein( domain architecture ID 11612796)

lipoate--protein ligase (LPL) family protein is responsible for attaching lipoic acid to a specific lysine at the active site of lipoate-dependent enzymes

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LplA cd16443
lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide ...
7-188 4.07e-55

lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.


:

Pssm-ID: 319742  Cd Length: 209  Bit Score: 175.52  E-value: 4.07e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413   7 VRAAFTDPAENLAFDEALLRV--APESPVLWLWRNPVCVVVGRGQRIAREVRIDECVRDGVPVLRRASGGGTVFHDPGNL 84
Cdd:cd16443    4 IDSSGDPPAENLALDEALLRSvaAPPTLRLYLWQNPPTVVIGRFQNPLEEVNLEYAEEDGIPVVRRPSGGGAVFHDLGNL 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413  85 NVTLVLPGP---ADRPLEALGQVMSAAVDQLGL---VPRIGDRGLFVGDAKLCGFAVFRTKTGLLAHSTLLVETSAGLVG 158
Cdd:cd16443   84 NYSLILPKEhpsIDESYRALSQPVIKALRKLGVeaeFGGVGRNDLVVGGKKISGSAQRRTKGRILHHGTLLVDVDLEKLA 163
                        170       180       190
                 ....*....|....*....|....*....|..
gi 340525413 159 RYLTGAPPDPRPL--DSHRSPVASLAEHGLRP 188
Cdd:cd16443  164 RVLNVPYEKLKSKgpKSVRSRVTNLSELLGRD 195
 
Name Accession Description Interval E-value
LplA cd16443
lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide ...
7-188 4.07e-55

lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.


Pssm-ID: 319742  Cd Length: 209  Bit Score: 175.52  E-value: 4.07e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413   7 VRAAFTDPAENLAFDEALLRV--APESPVLWLWRNPVCVVVGRGQRIAREVRIDECVRDGVPVLRRASGGGTVFHDPGNL 84
Cdd:cd16443    4 IDSSGDPPAENLALDEALLRSvaAPPTLRLYLWQNPPTVVIGRFQNPLEEVNLEYAEEDGIPVVRRPSGGGAVFHDLGNL 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413  85 NVTLVLPGP---ADRPLEALGQVMSAAVDQLGL---VPRIGDRGLFVGDAKLCGFAVFRTKTGLLAHSTLLVETSAGLVG 158
Cdd:cd16443   84 NYSLILPKEhpsIDESYRALSQPVIKALRKLGVeaeFGGVGRNDLVVGGKKISGSAQRRTKGRILHHGTLLVDVDLEKLA 163
                        170       180       190
                 ....*....|....*....|....*....|..
gi 340525413 159 RYLTGAPPDPRPL--DSHRSPVASLAEHGLRP 188
Cdd:cd16443  164 RVLNVPYEKLKSKgpKSVRSRVTNLSELLGRD 195
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
12-235 7.02e-53

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


Pssm-ID: 439865  Cd Length: 246  Bit Score: 171.19  E-value: 7.02e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413  12 TDPAENLAFDEALLRVAPES---PVLWLWRNPVCVVVGRGQRIAREVRIDECVRDGVPVLRRASGGGTVFHDPGNLNVTL 88
Cdd:COG0095    8 TDPAFNLALDEALLEEVAEGedpPTLRLWRNPPTVVIGRFQNVLPEVNLEYVEEHGIPVVRRISGGGAVYHDPGNLNYSL 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413  89 VLPGPADRPL-----EALGQVMSAAVDQLGLVPRIGDRG-LFVGDAKLCGFAVFRTKTGLLAHSTLLVETSAGLVGRYLT 162
Cdd:COG0095   88 ILPEDDVPLSieesyRKLLEPILEALRKLGVDAEFSGRNdIVVDGRKISGNAQRRRKGAVLHHGTLLVDGDLEKLAKVLR 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413 163 gaPPDPRPLD----SHRSPVASLAEHGLRP------------GFpaveaavraaaSQLLGTFVPRPPSAAELARQRALLH 226
Cdd:COG0095  168 --VPYEKLRDkgikSVRSRVTNLSELLGTDitreevkealleAF-----------AEVLGVLEPGELTDEELEAAEELAE 234

                 ....*....
gi 340525413 227 TRYRYPSWH 235
Cdd:COG0095  235 EKYSSWEWN 243
lipoyltrans TIGR00545
lipoyltransferase and lipoate-protein ligase; One member of this group of proteins is bovine ...
12-183 2.97e-24

lipoyltransferase and lipoate-protein ligase; One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair]


Pssm-ID: 161920 [Multi-domain]  Cd Length: 324  Bit Score: 98.35  E-value: 2.97e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413   12 TDPAENLAFDEALLRVAP---ESPVLWLWRNPVCVVVGRGQRIAREVRIDECVRDGVPVLRRASGGGTVFHDPGNLNVTL 88
Cdd:TIGR00545   9 NDPYFNLALEEYLFKEFPktqRGKVLLFWQNANTIVIGRNQNTWAEVNLKELEEDNVNLFRRFSGGGAVFHDLGNICFSF 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413   89 VLP--GPADRPLEALGQVMSAAVDQLGLVPRIGDRG-LFVGDAKLCGFAVFRTKTGLLAHSTLLVETSAGLVGRYLTgap 165
Cdd:TIGR00545  89 ITPkdGKEFENAKIFTRNVIKALNSLGVEAELSGRNdLVVDGRKISGSAYYITKDRGFHHGTLLFDADLSKLAKYLN--- 165
                         170       180
                  ....*....|....*....|...
gi 340525413  166 PDPRPL-----DSHRSPVASLAE 183
Cdd:TIGR00545 166 VDKTKIeskgiTSVRSRVVNVKE 188
lplA PRK03822
lipoate-protein ligase A; Provisional
12-189 1.54e-20

lipoate-protein ligase A; Provisional


Pssm-ID: 179655  Cd Length: 338  Bit Score: 88.59  E-value: 1.54e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413  12 TDPAENLAFDEALLR-VAPESPVLWLWRNPVCVVVGRGQRIAREVRIDECVRDGVPVLRRASGGGTVFHDPGNLNVTLVL 90
Cdd:PRK03822  12 YDPWFNLAVEECIFRqMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMA 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413  91 PGPA-DRPLEAlgQVMSAAVDQLGLVPRIGDRGLFV-----GDAKLCGFAVFRTKTGLLAHSTLLVETSAGLVGRYLTga 164
Cdd:PRK03822  92 GKPEyDKTIST--SIVLNALNSLGVSAEASGRNDLVvktaeGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLN-- 167
                        170       180       190
                 ....*....|....*....|....*....|
gi 340525413 165 pPDPRPLD-----SHRSPVASLAEhgLRPG 189
Cdd:PRK03822 168 -PDKKKLQakgitSVRSRVTNLTE--LLPG 194
 
Name Accession Description Interval E-value
LplA cd16443
lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide ...
7-188 4.07e-55

lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.


Pssm-ID: 319742  Cd Length: 209  Bit Score: 175.52  E-value: 4.07e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413   7 VRAAFTDPAENLAFDEALLRV--APESPVLWLWRNPVCVVVGRGQRIAREVRIDECVRDGVPVLRRASGGGTVFHDPGNL 84
Cdd:cd16443    4 IDSSGDPPAENLALDEALLRSvaAPPTLRLYLWQNPPTVVIGRFQNPLEEVNLEYAEEDGIPVVRRPSGGGAVFHDLGNL 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413  85 NVTLVLPGP---ADRPLEALGQVMSAAVDQLGL---VPRIGDRGLFVGDAKLCGFAVFRTKTGLLAHSTLLVETSAGLVG 158
Cdd:cd16443   84 NYSLILPKEhpsIDESYRALSQPVIKALRKLGVeaeFGGVGRNDLVVGGKKISGSAQRRTKGRILHHGTLLVDVDLEKLA 163
                        170       180       190
                 ....*....|....*....|....*....|..
gi 340525413 159 RYLTGAPPDPRPL--DSHRSPVASLAEHGLRP 188
Cdd:cd16443  164 RVLNVPYEKLKSKgpKSVRSRVTNLSELLGRD 195
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
12-235 7.02e-53

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


Pssm-ID: 439865  Cd Length: 246  Bit Score: 171.19  E-value: 7.02e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413  12 TDPAENLAFDEALLRVAPES---PVLWLWRNPVCVVVGRGQRIAREVRIDECVRDGVPVLRRASGGGTVFHDPGNLNVTL 88
Cdd:COG0095    8 TDPAFNLALDEALLEEVAEGedpPTLRLWRNPPTVVIGRFQNVLPEVNLEYVEEHGIPVVRRISGGGAVYHDPGNLNYSL 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413  89 VLPGPADRPL-----EALGQVMSAAVDQLGLVPRIGDRG-LFVGDAKLCGFAVFRTKTGLLAHSTLLVETSAGLVGRYLT 162
Cdd:COG0095   88 ILPEDDVPLSieesyRKLLEPILEALRKLGVDAEFSGRNdIVVDGRKISGNAQRRRKGAVLHHGTLLVDGDLEKLAKVLR 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413 163 gaPPDPRPLD----SHRSPVASLAEHGLRP------------GFpaveaavraaaSQLLGTFVPRPPSAAELARQRALLH 226
Cdd:COG0095  168 --VPYEKLRDkgikSVRSRVTNLSELLGTDitreevkealleAF-----------AEVLGVLEPGELTDEELEAAEELAE 234

                 ....*....
gi 340525413 227 TRYRYPSWH 235
Cdd:COG0095  235 EKYSSWEWN 243
lipoyltrans TIGR00545
lipoyltransferase and lipoate-protein ligase; One member of this group of proteins is bovine ...
12-183 2.97e-24

lipoyltransferase and lipoate-protein ligase; One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair]


Pssm-ID: 161920 [Multi-domain]  Cd Length: 324  Bit Score: 98.35  E-value: 2.97e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413   12 TDPAENLAFDEALLRVAP---ESPVLWLWRNPVCVVVGRGQRIAREVRIDECVRDGVPVLRRASGGGTVFHDPGNLNVTL 88
Cdd:TIGR00545   9 NDPYFNLALEEYLFKEFPktqRGKVLLFWQNANTIVIGRNQNTWAEVNLKELEEDNVNLFRRFSGGGAVFHDLGNICFSF 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413   89 VLP--GPADRPLEALGQVMSAAVDQLGLVPRIGDRG-LFVGDAKLCGFAVFRTKTGLLAHSTLLVETSAGLVGRYLTgap 165
Cdd:TIGR00545  89 ITPkdGKEFENAKIFTRNVIKALNSLGVEAELSGRNdLVVDGRKISGSAYYITKDRGFHHGTLLFDADLSKLAKYLN--- 165
                         170       180
                  ....*....|....*....|...
gi 340525413  166 PDPRPL-----DSHRSPVASLAE 183
Cdd:TIGR00545 166 VDKTKIeskgiTSVRSRVVNVKE 188
lplA PRK03822
lipoate-protein ligase A; Provisional
12-189 1.54e-20

lipoate-protein ligase A; Provisional


Pssm-ID: 179655  Cd Length: 338  Bit Score: 88.59  E-value: 1.54e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413  12 TDPAENLAFDEALLR-VAPESPVLWLWRNPVCVVVGRGQRIAREVRIDECVRDGVPVLRRASGGGTVFHDPGNLNVTLVL 90
Cdd:PRK03822  12 YDPWFNLAVEECIFRqMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMA 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413  91 PGPA-DRPLEAlgQVMSAAVDQLGLVPRIGDRGLFV-----GDAKLCGFAVFRTKTGLLAHSTLLVETSAGLVGRYLTga 164
Cdd:PRK03822  92 GKPEyDKTIST--SIVLNALNSLGVSAEASGRNDLVvktaeGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLN-- 167
                        170       180       190
                 ....*....|....*....|....*....|
gi 340525413 165 pPDPRPLD-----SHRSPVASLAEhgLRPG 189
Cdd:PRK03822 168 -PDKKKLQakgitSVRSRVTNLTE--LLPG 194
PRK14061 PRK14061
unknown domain/lipoate-protein ligase A fusion protein; Provisional
13-191 1.94e-19

unknown domain/lipoate-protein ligase A fusion protein; Provisional


Pssm-ID: 172552 [Multi-domain]  Cd Length: 562  Bit Score: 86.70  E-value: 1.94e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413  13 DPAENLAFDEALLRVAPESP-VLWLWRNPVCVVVGRGQRIAREVRIDECVRDGVPVLRRASGGGTVFHDPGNLNVTLVLP 91
Cdd:PRK14061 237 DPWFNLAVEECIFRQMPATQrVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAG 316
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413  92 GPA-DRPLEAlgQVMSAAVDQLGLVPRIGDRGLFV-----GDAKLCGFAVFRTKTGLLAHSTLLVETSAGLVGRYLTgap 165
Cdd:PRK14061 317 KPEyDKTIST--SIVLNALNALGVSAEASGRNDLVvktaeGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLN--- 391
                        170       180       190
                 ....*....|....*....|....*....|.
gi 340525413 166 PDPRPL-----DSHRSPVASLAEhgLRPGFP 191
Cdd:PRK14061 392 PDKKKLaakgiTSVRSRVTNLTE--LLPGIP 420
BPL_LplA_LipB cd16435
biotin-lipoate ligase family; This family includes biotin protein ligase (BPL), ...
12-152 7.75e-18

biotin-lipoate ligase family; This family includes biotin protein ligase (BPL), lipoate-protein ligase A (LplA) and octanoyl-[acyl carrier protein]-protein acyltransferase (LipB). Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LplA) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes.


Pssm-ID: 319740  Cd Length: 198  Bit Score: 78.73  E-value: 7.75e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340525413  12 TDPAENLAFDEALLR--VAPESPVLWLWRNPVCVVVGRGQRIAREVRIDECVRDGVPVLRRASGGGTVFHDPGNLNVTLV 89
Cdd:cd16435    8 VDYESAWAAQEKSLRenVSNQSSTLLLWEHPTTVTLGRLDRELPHLELAKKIERGYELVVRNRGGRAVSHDPGQLVFSPV 87
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 340525413  90 LPGPADRPL--------EALGQVMSAAVDQLGLVPriGDRGLFVGDAKLCGFAVFRTKTGLLAHSTLLVET 152
Cdd:cd16435   88 IGPNVEFMIskfnliieEGIRDAIADFGQSAEVKW--GRNDLWIDNRKVCGIAVRVVKEAIFHGIALNLNQ 156
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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