|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
150-582 |
0e+00 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 560.54 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 150 IEKQNMLTLIDMLNDIIDKIDQGVIVLDKNEKILKANSIAKSIFSIN-------DTADIFPKIKIRATGNSLLNMKEYEF 222
Cdd:COG3829 1 AEELELKELEEELEAILDSLDDGIIVVDADGRITYVNRAAERILGLPreevigkNVTELIPNSPLLEVLKTGKPVTGVIQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 223 KAGTKNYMLIGEEYEIFEGDFNYSKVFIFTDLNSLKQ------KMFSATTTRENVNLENIIGESESIKMLKNKVKKIALS 296
Cdd:COG3829 81 KTGGKGKTVIVTAIPIFEDGEVIGAVETFRDITELKRlerklrEEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 297 SSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAFTGADPNGKIGKIEFTNKGTLFLD 376
Cdd:COG3829 161 DSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADGGTLFLD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 377 EIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFREDLYYRLNVIPFYIPPLRERKDDIR 456
Cdd:COG3829 241 EIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 457 VLTDYFVHKYSALFKKKVIGFESKVWDLLYSYSWPGNVRELENAVEYMINMLDDkGIITVNLLPQKIKSDLNRDDSLI-- 534
Cdd:COG3829 321 LLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEG-DVITPEHLPEYLLEEAEAASAAEeg 399
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 332697534 535 ----TLEELEKGLIERALHLYGNTvagKQQAADALGIGIATLYRKLKKYDIQ 582
Cdd:COG3829 400 slkeALEEVEKELIEEALEKTGGN---KSKAAKALGISRSTLYRKLKKYGIK 448
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
272-580 |
3.45e-124 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 377.31 E-value: 3.45e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 272 NLENIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNkPFVAINCAAVPDTLLESELFGYVKG 351
Cdd:NF041552 265 SFGKIIGKSKKIIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHQASGRKG-PFVPVNCSAIPEELFESEFFGYEEG 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 352 AFTGADPNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFR 431
Cdd:NF041552 344 AFTGALKKGKIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFR 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 432 EDLYYRLNVIPFYIPPLRERKDDIRVLTDYFVHKYSALFKKKVIGFESKVWDLLYSYSWPGNVRELENAVEYMInMLDDK 511
Cdd:NF041552 424 EDLYYRLNVVEIELPPLRERKEDIPLLINYFLKEICKENNKEIPKIDKEVYDILQNYKWKGNIRELKNTIEHLV-VLSKN 502
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332697534 512 GIITVNLLPQKIKSDLNRDDSLIT---------LEELEKGLIERALHLY-GNtvagKQQAADALGIGIATLYRKLKKYD 580
Cdd:NF041552 503 GTITKDSIPEYILESVKKKEDEEGdypldlnkaVEKLEIDTIKKALEMSnGN----KAKAAKLLNIPRSTLYYKLKQYG 577
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
276-442 |
1.99e-109 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 324.74 E-value: 1.99e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 276 IIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAFTG 355
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 356 ADpNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFREDLY 435
Cdd:pfam00158 81 AD-SDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*..
gi 332697534 436 YRLNVIP 442
Cdd:pfam00158 160 YRLNVIP 166
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
254-581 |
4.47e-107 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 329.02 E-value: 4.47e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 254 LNSLKQKMFSATTTRENVNLENIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINC 333
Cdd:TIGR02915 119 LYTLETENRRLQSALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINC 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 334 AAVPDTLLESELFGYVKGAFTGAdPNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRI 413
Cdd:TIGR02915 199 AAIPENLLESELFGYEKGAFTGA-VKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRI 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 414 IAATNKNLEKLIEEGAFREDLYYRLNVIPFYIPPLRERKDDIRVLTDYFVHKYSALFKKKVIGFESKVWDLLYSYSWPGN 493
Cdd:TIGR02915 278 VCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGN 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 494 VRELENAVEYMINMLDDKGIITVNL-LPQKIKSDlnrDDSLITL----EELEKGLIERALHLYGNTVAgkqQAADALGIG 568
Cdd:TIGR02915 358 VRELENKVKRAVIMAEGNQITAEDLgLDARERAE---TPLEVNLrevrERAEREAVRKAIARVDGNIA---RAAELLGIT 431
|
330
....*....|...
gi 332697534 569 IATLYRKLKKYDI 581
Cdd:TIGR02915 432 RPTLYDLMKKHGI 444
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
276-578 |
5.36e-103 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 320.58 E-value: 5.36e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 276 IIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAFTG 355
Cdd:PRK05022 189 MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTG 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 356 ADPNgKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFREDLY 435
Cdd:PRK05022 269 AISN-RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLY 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 436 YRLNVIPFYIPPLRERKDDIRVLTDYFVHKYSALFKKKVIGFESKVWDLLYSYSWPGNVRELENAV---------Eymin 506
Cdd:PRK05022 348 HRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVIsraallaraR---- 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 507 mlDDKGIITvnLLPQKIksDLNRDDSLIT------------------LEELEKGLIERALHLYGNTVAgkqQAADALGIG 568
Cdd:PRK05022 424 --GAGRIVT--LEAQHL--DLPAEVALPPpeaaaapaavvsqnlreaTEAFQRQLIRQALAQHQGNWA---AAARALELD 494
|
330
....*....|
gi 332697534 569 IATLYRKLKK 578
Cdd:PRK05022 495 RANLHRLAKR 504
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
277-447 |
3.56e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 96.06 E-value: 3.56e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 277 IGESESIKMLKNKVKkiALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAFtga 356
Cdd:cd00009 1 VGQEEAIEALREALE--LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 357 dpngKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRlgsntPVPVDVRIIAATNKNlekliEEGAFREDLYY 436
Cdd:cd00009 76 ----LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRP-----LLGDLDRALYD 141
|
170
....*....|.
gi 332697534 437 RLNVIpFYIPP 447
Cdd:cd00009 142 RLDIR-IVIPL 151
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
296-438 |
3.36e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 64.32 E-value: 3.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 296 SSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAFTGADPNGKIGKI----EFTNKG 371
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLAlalaRKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332697534 372 TLFLDEIGDMPLYLQAKLLRvfeQKEIVRLGSNTPVPVDVRIIAATN--KNLEKLIEEGAFREDLYYRL 438
Cdd:smart00382 81 VLILDEITSLLDAEQEALLL---LLEELRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| GAF |
COG2203 |
GAF domain [Signal transduction mechanisms]; |
7-144 |
3.11e-04 |
|
GAF domain [Signal transduction mechanisms];
Pssm-ID: 441805 [Multi-domain] Cd Length: 712 Bit Score: 43.64 E-value: 3.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 7 SMQNTVEKYAKVLSQVLGVD---VEIVDDN---FERIAGTGMFSGRInKNMENEGYVYKDVMKTGKQQIISEPGKHEICK 80
Cdd:COG2203 207 DLEELLQRILELAGELLGADrgaILLVDEDggeLELVAAPGLPEEEL-GRLPLGEGLAGRALRTGEPVVVNDASTDPRFA 285
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 332697534 81 NCPKIAQEGHcEETFEMSMPIKIGEKVVGVMGFvcfsEIQKEHILSNSEtfMEFLEQMSDLISS 144
Cdd:COG2203 286 PSLRELLLAL-GIRSLLCVPLLVDGRLIGVLAL----YSKEPRAFTEED--LELLEALADQAAI 342
|
|
| GAF_2 |
pfam13185 |
GAF domain; The GAF domain is named after some of the proteins it is found in, including ... |
60-143 |
4.76e-03 |
|
GAF domain; The GAF domain is named after some of the proteins it is found in, including cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA. It is also found in guanylyl cyclases and phytochromes. The structure of a GAF domain shows that the domain shares a similar fold with the PAS domain. This domain can bind O2, CO and NO (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 433019 [Multi-domain] Cd Length: 137 Bit Score: 37.83 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 60 DVMKTGKQQIISEPGKHEICKNCPkiaqEGHCEETFEMSMPIKIGEKVVGVMGFVCFseiqKEHILsnSETFMEFLEQMS 139
Cdd:pfam13185 60 EALRTGRPVIVNDLAADPAKKGLP----AGHAGLRSFLSVPLVSGGRVVGVLALGSN----RPGAF--DEEDLELLELLA 129
|
....
gi 332697534 140 DLIS 143
Cdd:pfam13185 130 EQAA 133
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
150-582 |
0e+00 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 560.54 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 150 IEKQNMLTLIDMLNDIIDKIDQGVIVLDKNEKILKANSIAKSIFSIN-------DTADIFPKIKIRATGNSLLNMKEYEF 222
Cdd:COG3829 1 AEELELKELEEELEAILDSLDDGIIVVDADGRITYVNRAAERILGLPreevigkNVTELIPNSPLLEVLKTGKPVTGVIQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 223 KAGTKNYMLIGEEYEIFEGDFNYSKVFIFTDLNSLKQ------KMFSATTTRENVNLENIIGESESIKMLKNKVKKIALS 296
Cdd:COG3829 81 KTGGKGKTVIVTAIPIFEDGEVIGAVETFRDITELKRlerklrEEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 297 SSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAFTGADPNGKIGKIEFTNKGTLFLD 376
Cdd:COG3829 161 DSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADGGTLFLD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 377 EIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFREDLYYRLNVIPFYIPPLRERKDDIR 456
Cdd:COG3829 241 EIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 457 VLTDYFVHKYSALFKKKVIGFESKVWDLLYSYSWPGNVRELENAVEYMINMLDDkGIITVNLLPQKIKSDLNRDDSLI-- 534
Cdd:COG3829 321 LLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEG-DVITPEHLPEYLLEEAEAASAAEeg 399
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 332697534 535 ----TLEELEKGLIERALHLYGNTvagKQQAADALGIGIATLYRKLKKYDIQ 582
Cdd:COG3829 400 slkeALEEVEKELIEEALEKTGGN---KSKAAKALGISRSTLYRKLKKYGIK 448
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
268-580 |
1.46e-143 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 421.68 E-value: 1.46e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 268 RENVNLENIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFG 347
Cdd:COG2204 125 RENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 348 YVKGAFTGADPNgKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEE 427
Cdd:COG2204 205 HEKGAFTGAVAR-RIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEE 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 428 GAFREDLYYRLNVIPFYIPPLRERKDDIRVLTDYFVHKYSALFKKKVIgFESKVWDLLYSYSWPGNVRELENAVEYMInM 507
Cdd:COG2204 284 GRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVK-LSPEALEALLAYDWPGNVRELENVIERAV-I 361
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 332697534 508 LDDKGIITVNLLPQkiksdlnrddsliTLEELEKGLIERALHLYGNTVAgkqQAADALGIGIATLYRKLKKYD 580
Cdd:COG2204 362 LADGEVITAEDLPE-------------ALEEVERELIERALEETGGNVS---RAAELLGISRRTLYRKLKKYG 418
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
162-580 |
2.48e-137 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 412.76 E-value: 2.48e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 162 LNDIIDKIDQGVIVLDKNEKILKANSIAKSIFSINDTADIfpkikiRATGNSLLNMKEYEFKAGTKNYMLIGEEYEIFEG 241
Cdd:COG3284 218 LPEFLGSLSEGLLAFDEDGRIVAANRAARRLLGLADAALL------GRPLEELFGLDLEALPDGARRAPASPRPLRLRDG 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 242 DFnYSKVFIFTDLNSLKQKMFSATTTRENvnLENIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAES 321
Cdd:COG3284 292 RR-LGALLRLRPARRAARAAPAGAPAPAA--LAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAAS 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 322 DRKNKPFVAINCAAVPDTLLESELFGYVKGAFTGADPNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRL 401
Cdd:COG3284 369 PRADGPFVAVNCAAIPEELIESELFGYEPGAFTGARRKGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPL 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 402 GSNTPVPVDVRIIAATNKNLEKLIEEGAFREDLYYRLNVIPFYIPPLRERkDDIRVLTDYFVHKYSAlfKKKVIGFESKV 481
Cdd:COG3284 449 GGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRER-EDLPALIEHLLRELAA--GRGPLRLSPEA 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 482 WDLLYSYSWPGNVRELENAVEYMINMLDDkGIITVNLLPQKIKSDL-----NRDDSLITLEELEKGLIERALHLY-GNtv 555
Cdd:COG3284 526 LALLAAYPWPGNVRELRNVLRTALALADG-GVITVEDLPDELRAELaaaapAAAAPLTSLEEAERDAILRALRACgGN-- 602
|
410 420
....*....|....*....|....*
gi 332697534 556 agKQQAADALGIGIATLYRKLKKYD 580
Cdd:COG3284 603 --VSAAARALGISRSTLYRKLKRYG 625
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
272-580 |
3.45e-124 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 377.31 E-value: 3.45e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 272 NLENIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNkPFVAINCAAVPDTLLESELFGYVKG 351
Cdd:NF041552 265 SFGKIIGKSKKIIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHQASGRKG-PFVPVNCSAIPEELFESEFFGYEEG 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 352 AFTGADPNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFR 431
Cdd:NF041552 344 AFTGALKKGKIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFR 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 432 EDLYYRLNVIPFYIPPLRERKDDIRVLTDYFVHKYSALFKKKVIGFESKVWDLLYSYSWPGNVRELENAVEYMInMLDDK 511
Cdd:NF041552 424 EDLYYRLNVVEIELPPLRERKEDIPLLINYFLKEICKENNKEIPKIDKEVYDILQNYKWKGNIRELKNTIEHLV-VLSKN 502
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332697534 512 GIITVNLLPQKIKSDLNRDDSLIT---------LEELEKGLIERALHLY-GNtvagKQQAADALGIGIATLYRKLKKYD 580
Cdd:NF041552 503 GTITKDSIPEYILESVKKKEDEEGdypldlnkaVEKLEIDTIKKALEMSnGN----KAKAAKLLNIPRSTLYYKLKQYG 577
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
276-442 |
1.99e-109 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 324.74 E-value: 1.99e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 276 IIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAFTG 355
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 356 ADpNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFREDLY 435
Cdd:pfam00158 81 AD-SDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*..
gi 332697534 436 YRLNVIP 442
Cdd:pfam00158 160 YRLNVIP 166
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
254-581 |
4.47e-107 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 329.02 E-value: 4.47e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 254 LNSLKQKMFSATTTRENVNLENIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINC 333
Cdd:TIGR02915 119 LYTLETENRRLQSALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINC 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 334 AAVPDTLLESELFGYVKGAFTGAdPNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRI 413
Cdd:TIGR02915 199 AAIPENLLESELFGYEKGAFTGA-VKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRI 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 414 IAATNKNLEKLIEEGAFREDLYYRLNVIPFYIPPLRERKDDIRVLTDYFVHKYSALFKKKVIGFESKVWDLLYSYSWPGN 493
Cdd:TIGR02915 278 VCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGN 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 494 VRELENAVEYMINMLDDKGIITVNL-LPQKIKSDlnrDDSLITL----EELEKGLIERALHLYGNTVAgkqQAADALGIG 568
Cdd:TIGR02915 358 VRELENKVKRAVIMAEGNQITAEDLgLDARERAE---TPLEVNLrevrERAEREAVRKAIARVDGNIA---RAAELLGIT 431
|
330
....*....|...
gi 332697534 569 IATLYRKLKKYDI 581
Cdd:TIGR02915 432 RPTLYDLMKKHGI 444
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
276-578 |
5.36e-103 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 320.58 E-value: 5.36e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 276 IIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAFTG 355
Cdd:PRK05022 189 MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTG 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 356 ADPNgKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFREDLY 435
Cdd:PRK05022 269 AISN-RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLY 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 436 YRLNVIPFYIPPLRERKDDIRVLTDYFVHKYSALFKKKVIGFESKVWDLLYSYSWPGNVRELENAV---------Eymin 506
Cdd:PRK05022 348 HRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVIsraallaraR---- 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 507 mlDDKGIITvnLLPQKIksDLNRDDSLIT------------------LEELEKGLIERALHLYGNTVAgkqQAADALGIG 568
Cdd:PRK05022 424 --GAGRIVT--LEAQHL--DLPAEVALPPpeaaaapaavvsqnlreaTEAFQRQLIRQALAQHQGNWA---AAARALELD 494
|
330
....*....|
gi 332697534 569 IATLYRKLKK 578
Cdd:PRK05022 495 RANLHRLAKR 504
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
238-581 |
1.34e-101 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 315.25 E-value: 1.34e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 238 IFEGDFNYS-KVFIFTDLNSLKQKMFSATTTR-ENVNL----------ENIIGESESIKMLKNKVKKIALSSSTVLITGE 305
Cdd:PRK11361 95 LRCGAFDYViKPFDLDELNLIVQRALQLQSMKkEIRHLhqalstswqwGHILTNSPAMMDICKDTAKIALSQASVLISGE 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 306 SGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAFTGADPNGKiGKIEFTNKGTLFLDEIGDMPLYL 385
Cdd:PRK11361 175 SGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQ-GLFERANEGTLLLDEIGEMPLVL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 386 QAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFREDLYYRLNVIPFYIPPLRERKDDIRVLTDYFVHK 465
Cdd:PRK11361 254 QAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQK 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 466 YSALFKKKVIGFESKVWDLLYSYSWPGNVRELENAVEYMINMlDDKGIITVNLLPQKIKSDLNRDDSLITLEELEKGLIE 545
Cdd:PRK11361 334 FSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM-NSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKE 412
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 332697534 546 RALHLYGNTVA--------GKQQAADALGIGIATLYRKLKKYDI 581
Cdd:PRK11361 413 EIKRVEKRIIMevleqqegNRTRTALMLGISRRALMYKLQEYGI 456
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
149-581 |
2.08e-99 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 311.35 E-value: 2.08e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 149 EIEKQNMLTLIDMLNDIidkidqgVIVLDKNEKILKANSIAKSIFSINDTAdifpkiKIRATGNSLLN-------MKEYE 221
Cdd:COG3283 76 EREHLELDALLEALPDP-------VFSIDLKGKIELANPAALSLLGLSEEE------LIGQPLSELLKgfnfsrwLESNE 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 222 FKAGTKNYMLIGEEYE-----IFEGDFNYSKVFIFTDLNsLK-----QKMFSATTTRENVNLENIIGESESIKMLKNKVK 291
Cdd:COG3283 143 PRPQSERVVINGQDYLadilpIYLPDEEGKSILAGAVVT-LKsaarlGEQLQALQVNDDSGFDHIVASSPKMRQVIRQAK 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 292 KIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAFtGADPNGKIGKIEFTNKG 371
Cdd:COG3283 222 KMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAF-GNAREGKKGLFEQANGG 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 372 TLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFREDLYYRLNVIPFYIPPLRER 451
Cdd:COG3283 301 TVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVLTLTLPPLRER 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 452 KDDIRVLTDYFVHKYSALFKKKVIGFESKVWDLLYSYSWPGNVRELENAVEYMINMLDDKGIITVNL-LPQKIKSDLNRD 530
Cdd:COG3283 381 KSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGDELTPEDLqLPEYAASAGLLD 460
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 332697534 531 DSLI-TLEEL----EKGLIERALHLYGNTvagkQQAADALGI---GIAtlyRKLKKYDI 581
Cdd:COG3283 461 DLLEgSLDEIvkrfERSLLRRLYPSYPST----RKLAKRLGVshtAIA---NKLREYGI 512
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
265-513 |
1.33e-96 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 304.72 E-value: 1.33e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 265 TTTRENVNLENIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESE 344
Cdd:TIGR01817 187 IARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 345 LFGYVKGAFTGAdPNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKL 424
Cdd:TIGR01817 267 LFGHEKGAFTGA-IAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEA 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 425 IEEGAFREDLYYRLNVIPFYIPPLRERKDDIRVLTDYFVHKYSALfKKKVIGFESKVWDLLYSYSWPGNVRELENAVEYM 504
Cdd:TIGR01817 346 VAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRE-NGRPLTITPSAIRVLMSCKWPGNVRELENCLERT 424
|
....*....
gi 332697534 505 INMLDDKGI 513
Cdd:TIGR01817 425 ATLSRSGTI 433
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
252-578 |
7.53e-95 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 299.85 E-value: 7.53e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 252 TDLNSLKQKMFSATTTRENVN----LENIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKP 327
Cdd:TIGR02329 186 ARATRLRQAATLRSATRNQLRtryrLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFP 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 328 FVAINCAAVPDTLLESELFGYVKGAFTGADPNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPV 407
Cdd:TIGR02329 266 FVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPV 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 408 PVDVRIIAATNKNLEKLIEEGAFREDLYYRLNVIPFYIPPLRERKDDIRVL-TDYFVHKYSAL---FKKKVIGFESKVWD 483
Cdd:TIGR02329 346 PVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLaAEYLVQAAAALrlpDSEAAAQVLAGVAD 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 484 LLYSYSWPGNVRELENAVEYMINML--DDKGIITVNLLpQKIKSDLNRD--------DSLITLEELEKGLIERALHLYGn 553
Cdd:TIGR02329 426 PLQRYPWPGNVRELRNLVERLALELsaMPAGALTPDVL-RALAPELAEAsgkgktsaLSLRERSRVEALAVRAALERFG- 503
|
330 340
....*....|....*....|....*
gi 332697534 554 tvAGKQQAADALGIGIATLYRKLKK 578
Cdd:TIGR02329 504 --GDRDAAAKALGISRTTLWRRLKA 526
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
263-578 |
1.91e-92 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 293.93 E-value: 1.91e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 263 SATTTRENVNLENIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAE--------SDRKNKPFVAINCA 334
Cdd:PRK15424 208 TRNALRTRYVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREyfarhdarQGKKSHPFVAVNCG 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 335 AVPDTLLESELFGYVKGAFTGADPNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRII 414
Cdd:PRK15424 288 AIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVI 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 415 AATNKNLEKLIEEGAFREDLYYRLNVIPFYIPPLRERKDDIRVLTD-YFVHKYSAL---FKKKVIGFESKVWDLLYSYSW 490
Cdd:PRK15424 368 SATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAEsFLKQSLAALsapFSAALRQGLQQCETLLLHYDW 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 491 PGNVRELENAVEYMINML--DDKGIITVNLLpQKIKSDLNRDDSLITLEELEKGLIERALHLY-GNtvagKQQAADALGI 567
Cdd:PRK15424 448 PGNVRELRNLMERLALFLsvEPTPDLTPQFL-QLLLPELARESAKTPAPRLLAATLQQALERFnGD----KTAAANYLGI 522
|
330
....*....|.
gi 332697534 568 GIATLYRKLKK 578
Cdd:PRK15424 523 SRTTLWRRLKA 533
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
253-578 |
3.03e-90 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 285.39 E-value: 3.03e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 253 DLNSLKQKMFSATTTRENVNLE---------NIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDR 323
Cdd:PRK10365 109 DFDNLQATLEKALAHTHSIDAEtpavtasqfGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 324 KNKPFVAINCAAVPDTLLESELFGYVKGAFTGADPNgKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGS 403
Cdd:PRK10365 189 SEKPLVTLNCAALNESLLESELFGHEKGAFTGADKR-REGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGS 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 404 NTPVPVDVRIIAATNKNLEKLIEEGAFREDLYYRLNVIPFYIPPLRERKDDIRVLTDYFVHKYSALFKKKVIGFESKVWD 483
Cdd:PRK10365 268 NQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMD 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 484 LLYSYSWPGNVRELENAVEYMINMLDDKgIITVNLLPQKIKSD---LNRDDSLITLEELEKGLIERALHlygNTVAGKQQ 560
Cdd:PRK10365 348 LLIHYDWPGNIRELENAVERAVVLLTGE-YISERELPLAIASTpipLGQSQDIQPLVEVEKEVILAALE---KTGGNKTE 423
|
330
....*....|....*...
gi 332697534 561 AADALGIGIATLYRKLKK 578
Cdd:PRK10365 424 AARQLGITRKTLLAKLSR 441
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
302-582 |
1.46e-87 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 274.80 E-value: 1.46e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 302 ITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESelfgyvkgaftgadpngkigkieftnkgtlfldeigdm 381
Cdd:COG3604 120 ILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 382 plyLQakllrvfeQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFREDLYYRLNVIPFYIPPLRERKDDIRVLTDY 461
Cdd:COG3604 162 ---LQ--------EGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLLAEH 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 462 FVHKYSALFKKKVIGFESKVWDLLYSYSWPGNVRELENAVEYMINMLDDkGIITVNLLPQkiksdlnrdDSLITLEELEK 541
Cdd:COG3604 231 FLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEG-GVLDADDLAP---------GSREALEEVER 300
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 332697534 542 GLIERALHLYGNTVAGkqqAADALGIGIATLYRKLKKYDIQ 582
Cdd:COG3604 301 EHILEALERTGGNIAG---AARLLGLTPSTLRSRMKKLGIK 338
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
270-581 |
1.04e-86 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 283.26 E-value: 1.04e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 270 NVNLE--NIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFG 347
Cdd:PRK15429 370 NVDSEfgEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFG 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 348 YVKGAFTGADpNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEE 427
Cdd:PRK15429 450 HERGAFTGAS-AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVAD 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 428 GAFREDLYYRLNVIPFYIPPLRERKDDIRVLTDYFVHKYSALFKKKVIGFESKVWDLLYSYSWPGNVRELENAVEYMINM 507
Cdd:PRK15429 529 REFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 608
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 508 ---------LDDKGIITVNLLPqkIKSDLNRDDslitleELEKGLIERALHLYGNTVAGKQQAADALGIGIATLYRKLKK 578
Cdd:PRK15429 609 trgnvlqlsLPDITLPEPETPP--AATVVAQEG------EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 680
|
...
gi 332697534 579 YDI 581
Cdd:PRK15429 681 LGI 683
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
275-582 |
5.46e-84 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 269.82 E-value: 5.46e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 275 NIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAFT 354
Cdd:PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 355 GADpNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFREDL 434
Cdd:PRK10923 219 GAN-TIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 435 YYRLNVIPFYIPPLRERKDDIRVLTDYFVHKYSalfkkKVIGFESKVWD-----LLYSYSWPGNVRELENAVEYMINMLD 509
Cdd:PRK10923 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAA-----RELGVEAKLLHpeteaALTRLAWPGNVRQLENTCRWLTVMAA 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 510 DKGIITVNLLPQKIKSDLNRDDSLIT---------------------------LEELEKGLIERALHlygNTVAGKQQAA 562
Cdd:PRK10923 373 GQEVLIQDLPGELFESTVPESTSQMQpdswatllaqwadralrsghqnllseaQPELERTLLTTALR---HTQGHKQEAA 449
|
330 340
....*....|....*....|
gi 332697534 563 DALGIGIATLYRKLKKYDIQ 582
Cdd:PRK10923 450 RLLGWGRNTLTRKLKELGME 469
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
274-502 |
1.31e-81 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 262.85 E-value: 1.31e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 274 ENIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAF 353
Cdd:PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAF 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 354 TGADPNgKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFRED 433
Cdd:PRK15115 214 TGAVSN-REGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFRED 292
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332697534 434 LYYRLNVIPFYIPPLRERKDDIRVLTDYFVHKYSALFKKKVIGFESKVWDLLYSYSWPGNVRELENAVE 502
Cdd:PRK15115 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
106-582 |
7.14e-77 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 255.76 E-value: 7.14e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 106 KVVGVMGFVCFSEIQKEHILSnsetfmefleqmsdLISSKAKE---EIEKQNMLTLID----MLNDIIDKIDQGVIVLDK 178
Cdd:PRK11388 156 RLTGTIALACPVEQTSAADLP--------------LTLSIAREvgnLLLTDSLLAESNrhlnQLNALLESMDDGVIAWDE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 179 NEKILKANSIAKSIFSINDTADI---------FPKIKIRA-TGNSLLNMKEYEFKAGTKNYMLIGEEYEIFEGDfNYSKV 248
Cdd:PRK11388 222 QGNLQFLNAQAARLLRLDATASQgraitelltLPAVLQQAiKQAHPLKHVEVTFESQGQFIDAVITLKPIIEGQ-GTSFI 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 249 FIFTDLNSLKQKMFSaTTTRENVNLENIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPF 328
Cdd:PRK11388 301 LLLHPVEQMRQLMTS-QLGKVSHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPY 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 329 VAINCAAVPDTLLESELFGyvkgAFTGADPNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVP 408
Cdd:PRK11388 380 IAVNCQLYPDEALAEEFLG----SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIP 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 409 VDVRIIAATNKNLEKLIEEGAFREDLYYRLNVIPFYIPPLRERKDDIRVLTDYFVHKYSALFKKKvIGFESKVWDLLYSY 488
Cdd:PRK11388 456 VDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSY 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 489 SWPGNVRELENAVEYmINMLDDKGIITVNLLPQKIKSDLNRDD-------SLITLEELEKGLIERALHLYGNTVagkQQA 561
Cdd:PRK11388 535 RWPGNDFELRSVIEN-LALSSDNGRIRLSDLPEHLFTEQATDDvsatrlsTSLSLAELEKEAIINAAQVCGGRI---QEM 610
|
490 500
....*....|....*....|.
gi 332697534 562 ADALGIGIATLYRKLKKYDIQ 582
Cdd:PRK11388 611 AALLGIGRTTLWRKMKQHGID 631
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
276-579 |
3.10e-76 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 244.90 E-value: 3.10e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 276 IIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAFTG 355
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 356 ADpNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFREDLY 435
Cdd:TIGR02974 81 AQ-KRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 436 YRL--NVIpfYIPPLRERKDDIRVLTDYFVHKYSALFKKKVI-GFESKVWDLLYSYSWPGNVRELENAVEYMINMLDDKG 512
Cdd:TIGR02974 160 DRLafDVI--TLPPLRERQEDIMLLAEHFAIRMARELGLPLFpGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEE 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 513 IITVNLL------PQKIKSDLNRDDSLITL----------------------EELEKGLIERAL-HLYGNtvagKQQAAD 563
Cdd:TIGR02974 238 APIDEIIidpfasPWRPKQAAPAVDEVNSTptdlpspssiaaafpldlkqaqQDYEIELLQQALaEAQFN----QRKAAE 313
|
330
....*....|....*.
gi 332697534 564 ALGIGIATLYRKLKKY 579
Cdd:TIGR02974 314 LLGLTYHQLRGLLRKH 329
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
265-501 |
1.19e-72 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 241.51 E-value: 1.19e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 265 TTTRENVNLENIIGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESE 344
Cdd:PRK10820 195 LAVNDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESE 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 345 LFGYVKGAFTGAdPNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKL 424
Cdd:PRK10820 275 LFGHAPGAYPNA-LEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 425 IEEGAFREDLYYRLNVIPFYIPPLRERKDDIRVLTDYFVHKYS---ALFKKKvigFESKVWDLLYSYSWPGNVRELENAV 501
Cdd:PRK10820 354 VQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFAdeqGVPRPK---LAADLNTVLTRYGWPGNVRQLKNAI 430
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
272-582 |
2.28e-68 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 224.16 E-value: 2.28e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 272 NLENIIGESES-IKMLKnKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVK 350
Cdd:PRK11608 4 YKDNLLGEANSfLEVLE-QVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 351 GAFTGADpNGKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAF 430
Cdd:PRK11608 83 GAFTGAQ-KRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 431 REDLYYRLNVIPFYIPPLRERKDDIRVLTDYFVHKYS-----ALFKkkviGFESKVWDLLYSYSWPGNVRELENAVEYMI 505
Cdd:PRK11608 162 RADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCrelglPLFP----GFTERARETLLNYRWPGNIRELKNVVERSV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 506 -------NMLDDKGIITVNLLPQKIKSDLNRDDSLITL--------EELEKGLIERALHlygNTVAGKQQAADALGIGIA 570
Cdd:PRK11608 238 yrhgtseYPLDNIIIDPFKRRPAEEAIAVSETTSLPTLpldlrewqHQQEKELLQRSLQ---QAKFNQKRAAELLGLTYH 314
|
330
....*....|..
gi 332697534 571 TLYRKLKKYDIQ 582
Cdd:PRK11608 315 QLRALLKKHQIL 326
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
290-524 |
1.02e-39 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 152.29 E-value: 1.02e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 290 VKKIAL-SSSTVLITGESGTGKEIFARAIHAESDRKNK---PFVAINCAavpdTL----LESELFGYVKGAFTGADpNGK 361
Cdd:COG4650 200 IERVAIrSRAPILLTGPTGAGKSQLARRIYELKKARHQvsgRFVEVNCA----TLrgdgAMSALFGHVKGAFTGAV-SDR 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 362 IGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPVDVRIIAATNKNLEKLIEEGAFREDLYYRLNVI 441
Cdd:COG4650 275 AGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLW 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 442 PFYIPPLRERKDDIRVLTDYFVHKYSALFKKKViGF--ESKVWDLLYSYS----WPGNVRELENAVEYMINmLDDKGIIT 515
Cdd:COG4650 355 TFRLPGLAERREDIEPNLDYELARFAREQGRRV-RFnkEARARYLAFATSpealWSGNFRDLNASVTRMAT-LAEGGRIT 432
|
....*....
gi 332697534 516 VNLLPQKIK 524
Cdd:COG4650 433 VALVDEEIA 441
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
237-544 |
3.97e-26 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 113.66 E-value: 3.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 237 EIFEGDFNYSKVfifTDLNSLKQKMFSATTTRENVNLENIIGESESikmLKNKVK--KIALS----SSTVLITGESGTGK 310
Cdd:COG1221 70 EAFEEQFGTKLK---SEYSFVELLAEKENNEEEEDPFDNLIGANGS---LKNAIEqaKAAILyppkGLHTLILGPTGVGK 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 311 EIFARAIHA---ESDR--KNKPFVAINCAavpD-----TLLESELFGYVKGAFTGADPNgKIGKIEFTNKGTLFLDEIGD 380
Cdd:COG1221 144 SFFAELMYEyaiEIGVlpEDAPFVVFNCA---DyannpQLLMSQLFGYVKGAFTGADKD-KEGLIEKADGGILFLDEVHR 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 381 MPLYLQAKLLRVFEQKEIVRLG-SNTPVPVDVRIIAATNKNLEKlieegAFREDLYYRLNVIpFYIPPLRERKDDIRV-L 458
Cdd:COG1221 220 LPPEGQEMLFTFMDKGIYRRLGeTEKTRKANVRIIFATTEDPES-----SLLKTFLRRIPMV-IKLPSLEERSLEERLeL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 459 TDYFVHKYSALFKKKVIgFESKVWDLLYSYSWPGNVRELENAVEYMI------NMLDDKGIITVNL--LPQKIKSDL--- 527
Cdd:COG1221 294 IKHFFKEEAKRLNKPIK-VSKEVLKALLLYDCPGNIGQLKSDIQLACakaflnYITNKKEEIEITLsdLPENVKKGLlkl 372
|
330
....*....|....*....
gi 332697534 528 --NRDDSLITLEELEKGLI 544
Cdd:COG1221 373 keNREELDKLSEYLEEYLI 391
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
277-447 |
3.56e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 96.06 E-value: 3.56e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 277 IGESESIKMLKNKVKkiALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAFtga 356
Cdd:cd00009 1 VGQEEAIEALREALE--LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 357 dpngKIGKIEFTNKGTLFLDEIGDMPLYLQAKLLRVFEQKEIVRlgsntPVPVDVRIIAATNKNlekliEEGAFREDLYY 436
Cdd:cd00009 76 ----LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRP-----LLGDLDRALYD 141
|
170
....*....|.
gi 332697534 437 RLNVIpFYIPP 447
Cdd:cd00009 142 RLDIR-IVIPL 151
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
277-448 |
3.08e-22 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 92.79 E-value: 3.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 277 IGESESIKMLKNKVKKIALSSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESelfgyvkgaftgA 356
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ------------A 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 357 DPngkigkieftnkGTLFLDEIGDMPLYLQAKLLRvfeqkeivRLGSNTpvPVDVRIIAATNKNLEKLIEEGAFREDLYY 436
Cdd:pfam14532 69 KG------------GTLYLKDIADLSKALQKGLLL--------LLAKAE--GYRVRLVCTSSKDLPQLAAAGLFDEQLYF 126
|
170
....*....|..
gi 332697534 437 RLNVIPFYIPPL 448
Cdd:pfam14532 127 ELSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
296-438 |
3.36e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 64.32 E-value: 3.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 296 SSSTVLITGESGTGKEIFARAIHAESDRKNKPFVAINCAAVPDTLLESELFGYVKGAFTGADPNGKIGKI----EFTNKG 371
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLAlalaRKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332697534 372 TLFLDEIGDMPLYLQAKLLRvfeQKEIVRLGSNTPVPVDVRIIAATN--KNLEKLIEEGAFREDLYYRL 438
Cdd:smart00382 81 VLILDEITSLLDAEQEALLL---LLEELRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
536-578 |
2.36e-08 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 50.08 E-value: 2.36e-08
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 332697534 536 LEELEKGLIERALHLYGNTvagKQQAADALGIGIATLYRKLKK 578
Cdd:pfam02954 1 LEEVEKELIEAALERTGGN---KSKAARLLGISRRTLYRKLKK 40
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
536-581 |
1.57e-06 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 46.34 E-value: 1.57e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 332697534 536 LEELEKGLIERALHLYGntvaGKQ-QAADALGIGIATLYRKLKKYDI 581
Cdd:COG2901 40 LAEVEKPLLETVLEHTR----GNQsRAAEMLGINRNTLRKKLKQYGL 82
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
300-451 |
5.42e-06 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 46.13 E-value: 5.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 300 VLITGESGTGK----EIFARAIhaesdrKNKPFVAINCaavPDTLLESELFG----------YVKGAFTGADPNGKIgki 365
Cdd:pfam07728 2 VLLVGPPGTGKtelaERLAAAL------SNRPVFYVQL---TRDTTEEDLFGrrnidpggasWVDGPLVRAAREGEI--- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 366 eftnkgtLFLDEIGDMPLYLQAKLLRVFEQKEIVRLGSNTPVPV---DVRIIAATNknleklieegafreDLYYRLNVIP 442
Cdd:pfam07728 70 -------AVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMN--------------PLDRGLNELS 128
|
....*....
gi 332697534 443 fyiPPLRER 451
Cdd:pfam07728 129 ---PALRSR 134
|
|
| GAF |
COG2203 |
GAF domain [Signal transduction mechanisms]; |
7-144 |
3.11e-04 |
|
GAF domain [Signal transduction mechanisms];
Pssm-ID: 441805 [Multi-domain] Cd Length: 712 Bit Score: 43.64 E-value: 3.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 7 SMQNTVEKYAKVLSQVLGVD---VEIVDDN---FERIAGTGMFSGRInKNMENEGYVYKDVMKTGKQQIISEPGKHEICK 80
Cdd:COG2203 207 DLEELLQRILELAGELLGADrgaILLVDEDggeLELVAAPGLPEEEL-GRLPLGEGLAGRALRTGEPVVVNDASTDPRFA 285
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 332697534 81 NCPKIAQEGHcEETFEMSMPIKIGEKVVGVMGFvcfsEIQKEHILSNSEtfMEFLEQMSDLISS 144
Cdd:COG2203 286 PSLRELLLAL-GIRSLLCVPLLVDGRLIGVLAL----YSKEPRAFTEED--LELLEALADQAAI 342
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
300-418 |
2.75e-03 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 38.34 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 300 VLITGESGTGKEIFARAIHAESDRknkPFVAINCAAVPDTLL-ESElfGYVKGAFTGAdpngkigkiEFTNKGTLFLDEI 378
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGA---PFIEISGSELVSKYVgESE--KRLRELFEAA---------KKLAPCVIFIDEI 66
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 332697534 379 -----------GDMPLYLQAKLLRVFEqkeivRLGSNTPvpvDVRIIAATN 418
Cdd:pfam00004 67 dalagsrgsggDSESRRVVNQLLTELD-----GFTSSNS---KVIVIAATN 109
|
|
| GAF_2 |
pfam13185 |
GAF domain; The GAF domain is named after some of the proteins it is found in, including ... |
60-143 |
4.76e-03 |
|
GAF domain; The GAF domain is named after some of the proteins it is found in, including cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA. It is also found in guanylyl cyclases and phytochromes. The structure of a GAF domain shows that the domain shares a similar fold with the PAS domain. This domain can bind O2, CO and NO (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 433019 [Multi-domain] Cd Length: 137 Bit Score: 37.83 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332697534 60 DVMKTGKQQIISEPGKHEICKNCPkiaqEGHCEETFEMSMPIKIGEKVVGVMGFVCFseiqKEHILsnSETFMEFLEQMS 139
Cdd:pfam13185 60 EALRTGRPVIVNDLAADPAKKGLP----AGHAGLRSFLSVPLVSGGRVVGVLALGSN----RPGAF--DEEDLELLELLA 129
|
....
gi 332697534 140 DLIS 143
Cdd:pfam13185 130 EQAA 133
|
|
| HTH_50 |
pfam18024 |
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription ... |
536-582 |
7.46e-03 |
|
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription factor whose major function is to control the expression of genes important in the biosynthesis and transport of aromatic amino acids. This entry represents the C-terminal helix-turn-helix DNA-binding domain of TyrR and related proteins.
Pssm-ID: 407862 [Multi-domain] Cd Length: 50 Bit Score: 34.70 E-value: 7.46e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 332697534 536 LEELEKGLIERALHLYGNTvagkQQAADALGIGIATLYRKLKKYDIQ 582
Cdd:pfam18024 8 VSYIERELIGAAYENYKSA----RKVAKALGLSHTTIANKMKRYGIS 50
|
|
| |
