|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-347 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 678.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 1 MALNLRKNHPLMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLI 80
Cdd:MTH00119 1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 81 RNLHANGASFFFICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00119 81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 161 LVEWAWGGFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 241 AALALFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320
|
330 340
....*....|....*....|....*..
gi 329134189 321 LSQILFWTLVANLLILTWVGSQPVEHP 347
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHP 347
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
10-343 |
3.20e-121 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 354.48 E-value: 3.20e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 10 PLMKIVNDSLiDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNLHANGAS 89
Cdd:COG1290 19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 90 FFFICIYLHIGRGIYYGSY-----LNketWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEW 164
Cdd:COG1290 98 LFFAAVYLHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTW 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 165 AWGGFSVDNPTLTRFFAIH-FLLPFLIAGLTLVHLTLLHDTGSNNPLGI----PSDCDKIPFHPYYTIKDFLGFALLFIP 239
Cdd:COG1290 175 LFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGV 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 240 LAALALFAPNllGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASILVLFLLPLLHTSKLRSMT 317
Cdd:COG1290 255 FALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPR 332
|
330 340
....*....|....*....|....*.
gi 329134189 318 FRPLSQILFWTLVANLLILTWVGSQP 343
Cdd:COG1290 333 YRPVRTALGVAFIVFFIVLTILGANP 358
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
10-207 |
3.74e-91 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 271.16 E-value: 3.74e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 10 PLMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNLHANGAS 89
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 90 FFFICIYLHIGRGIYYGSYLN--KETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWG 167
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 329134189 168 GFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
19-192 |
1.13e-79 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 241.52 E-value: 1.13e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 19 LIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNLHANGASFFFICIYLH 98
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 99 IGRGIYYG--SYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTL 176
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170
....*....|....*.
gi 329134189 177 TRFFAIHFLLPFLIAG 192
Cdd:pfam00033 161 TRFFSLHFLLPFILAI 176
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
240-297 |
1.09e-09 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 56.73 E-value: 1.09e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 329134189 240 LAALALFAPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 297
Cdd:TIGR01156 51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-347 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 678.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 1 MALNLRKNHPLMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLI 80
Cdd:MTH00119 1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 81 RNLHANGASFFFICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00119 81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 161 LVEWAWGGFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 241 AALALFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320
|
330 340
....*....|....*....|....*..
gi 329134189 321 LSQILFWTLVANLLILTWVGSQPVEHP 347
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHP 347
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-347 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 632.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 1 MAlNLRKNHPLMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLI 80
Cdd:MTH00131 1 MA-SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 81 RNLHANGASFFFICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00131 80 RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 161 LVEWAWGGFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPL 240
Cdd:MTH00131 160 LVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 241 AALALFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00131 240 TSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRP 319
|
330 340
....*....|....*....|....*..
gi 329134189 321 LSQILFWTLVANLLILTWVGSQPVEHP 347
Cdd:MTH00131 320 LTQFLFWTLVADVLILTWIGGMPVEHP 346
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
4-347 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 632.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 4 NLRKNHPLMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNL 83
Cdd:MTH00100 3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 84 HANGASFFFICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVE 163
Cdd:MTH00100 83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 164 WAWGGFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPLAAL 243
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 244 ALFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQ 323
Cdd:MTH00100 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322
|
330 340
....*....|....*....|....
gi 329134189 324 ILFWTLVANLLILTWVGSQPVEHP 347
Cdd:MTH00100 323 CLFWLLVADLLTLTWIGGQPVEHP 346
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-347 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 614.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 1 MALNLRKNHPLMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLI 80
Cdd:MTH00074 1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 81 RNLHANGASFFFICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00074 81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 161 LVEWAWGGFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 241 AALALFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320
|
330 340
....*....|....*....|....*..
gi 329134189 321 LSQILFWTLVANLLILTWVGSQPVEHP 347
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDP 347
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
5-347 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 593.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 5 LRKNHPLMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNLH 84
Cdd:MTH00191 1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 85 ANGASFFFICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEW 164
Cdd:MTH00191 81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 165 AWGGFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPLAALA 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 245 LFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQI 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320
|
330 340
....*....|....*....|...
gi 329134189 325 LFWTLVANLLILTWVGSQPVEHP 347
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDP 343
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
12-347 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 580.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 12 MKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNLHANGASFF 91
Cdd:MTH00156 1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 92 FICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSV 171
Cdd:MTH00156 81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 172 DNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPLAALALFAPNLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 252 GDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQILFWTLVA 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320
|
330
....*....|....*.
gi 329134189 332 NLLILTWVGSQPVEHP 347
Cdd:MTH00156 321 IVILLTWIGARPVEEP 336
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-347 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 574.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 1 MALNLRKNHPLMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLI 80
Cdd:MTH00145 1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 81 RNLHANGASFFFICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00145 81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 161 LVEWAWGGFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPL 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 241 AALALFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320
|
330 340
....*....|....*....|....*..
gi 329134189 321 LSQILFWTLVANLLILTWVGSQPVEHP 347
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEP 347
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
5-347 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 562.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 5 LRKNHPLMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNLH 84
Cdd:MTH00034 4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 85 ANGASFFFICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEW 164
Cdd:MTH00034 84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 165 AWGGFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPLAALA 244
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 245 LFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQI 324
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323
|
330 340
....*....|....*....|...
gi 329134189 325 LFWTLVANLLILTWVGSQPVEHP 347
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYP 346
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-347 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 541.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 1 MALNLRKNHPLMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLI 80
Cdd:MTH00016 1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 81 RNLHANGASFFFICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00016 81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 161 LVEWAWGGFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 241 AALALFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320
|
330 340
....*....|....*....|....*..
gi 329134189 321 LSQILFWTLVANLLILTWVGSQPVEHP 347
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPP 347
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
3-347 |
8.27e-171 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 479.97 E-value: 8.27e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 3 LNLRKNHPLMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRN 82
Cdd:MTH00022 1 MPLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 83 LHANGASFFFICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLV 162
Cdd:MTH00022 81 LHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 163 EWAWGGFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPLAA 242
Cdd:MTH00022 161 QWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 243 LALFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLS 322
Cdd:MTH00022 241 IVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLG 320
|
330 340
....*....|....*....|....*
gi 329134189 323 QILFWTLVANLLILTWVGSQPVEHP 347
Cdd:MTH00022 321 RMAFWFLIVDFILLTWIGSQVVEEP 345
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-347 |
6.62e-166 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 467.65 E-value: 6.62e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 1 MALNLRKNHPLMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLI 80
Cdd:MTH00053 1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 81 RNLHANGASFFFICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00053 81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 161 LVEWAWGGFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 241 AALALFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320
|
330 340
....*....|....*....|....*..
gi 329134189 321 LSQILFWTLVANLLILTWVGSQPVEHP 347
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEP 347
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
5-347 |
2.20e-163 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 461.31 E-value: 2.20e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 5 LRKNHPLMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNLH 84
Cdd:MTH00224 5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 85 ANGASFFFICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEW 164
Cdd:MTH00224 85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 165 AWGGFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPLAALA 244
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 245 LFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQI 324
Cdd:MTH00224 245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324
|
330 340
....*....|....*....|...
gi 329134189 325 LFWTLVANLLILTWVGSQPVEHP 347
Cdd:MTH00224 325 LFWLLVTSWAILTWIGGRPVEDP 347
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
3-343 |
7.25e-129 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 373.89 E-value: 7.25e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 3 LNLRKNHpLMKIVNDsLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRN 82
Cdd:MTH00033 1 MRLRKTG-LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 83 LHANGASFFFICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLV 162
Cdd:MTH00033 79 VHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 163 EWAWGGFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPLAA 242
Cdd:MTH00033 159 EWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVI 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 243 LALFA--PNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRP 320
Cdd:MTH00033 239 IGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNP 318
|
330 340
....*....|....*....|...
gi 329134189 321 LSQILFWTLVANLLILTWVGSQP 343
Cdd:MTH00033 319 TGKFFFWFIVGDFIILTWIGSAP 341
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
10-343 |
3.20e-121 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 354.48 E-value: 3.20e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 10 PLMKIVNDSLiDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNLHANGAS 89
Cdd:COG1290 19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 90 FFFICIYLHIGRGIYYGSY-----LNketWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEW 164
Cdd:COG1290 98 LFFAAVYLHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTW 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 165 AWGGFSVDNPTLTRFFAIH-FLLPFLIAGLTLVHLTLLHDTGSNNPLGI----PSDCDKIPFHPYYTIKDFLGFALLFIP 239
Cdd:COG1290 175 LFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGV 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 240 LAALALFAPNllGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASILVLFLLPLLHTSKLRSMT 317
Cdd:COG1290 255 FALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPR 332
|
330 340
....*....|....*....|....*.
gi 329134189 318 FRPLSQILFWTLVANLLILTWVGSQP 343
Cdd:COG1290 333 YRPVRTALGVAFIVFFIVLTILGANP 358
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
13-347 |
5.57e-110 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 324.59 E-value: 5.57e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 13 KIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNLHANGASFFF 92
Cdd:MTH00086 1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 93 ICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVD 172
Cdd:MTH00086 81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 173 NPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIpLAALALFAPNLLG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 253 DPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSklrSMTFRPLSQILFWTLVAN 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVV 316
|
330
....*....|....*
gi 329134189 333 LLILTWVGSQPVEHP 347
Cdd:MTH00086 317 NVILSWLGQCLVEYP 331
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
10-207 |
3.74e-91 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 271.16 E-value: 3.74e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 10 PLMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNLHANGAS 89
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 90 FFFICIYLHIGRGIYYGSYLN--KETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWG 167
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 329134189 168 GFSVDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
11-347 |
7.47e-85 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 260.69 E-value: 7.47e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 11 LMKIVNDSLIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNLHANGASF 90
Cdd:MTH00046 1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 91 FFICIYLHIGRGIYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFS 170
Cdd:MTH00046 81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 171 VDNPTLTRFFAIHFLLPFLIAGLTLVHLTLLHDTGSNNPLGIP---SDCdkIPFHPYYTIKDFLGFALLFIPLAALALFA 247
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSngySDV--VYFHSYFTVKDLFLFMVVCSLLVFWLFVS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 248 PNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGvLALAASILVLFLLPLLHTSKLRSMtfrpLSQILFW 327
Cdd:MTH00046 239 PDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFW 313
|
330 340
....*....|....*....|
gi 329134189 328 TLVANLLILTWVGSQPVEHP 347
Cdd:MTH00046 314 LIVSLFFSLSYLGGCHPEYP 333
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
19-192 |
1.13e-79 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 241.52 E-value: 1.13e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 19 LIDLPTPSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNLHANGASFFFICIYLH 98
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 99 IGRGIYYG--SYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTL 176
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170
....*....|....*.
gi 329134189 177 TRFFAIHFLLPFLIAG 192
Cdd:pfam00033 161 TRFFSLHFLLPFILAI 176
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
208-347 |
5.94e-52 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 168.98 E-value: 5.94e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 208 NPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPLAALALFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPN 287
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 288 KLGGVLALAASILVLFLLPLLHTSKLRSmTFRPLSQILFWTLVANLLILTWVGSQPVEHP 347
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYP 139
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
89-254 |
1.70e-41 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 142.77 E-value: 1.70e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 89 SFFFICIYLHIGRGIYYGSYLNKE--TWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 166
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 167 GGFSVDNPTLTRFFAIHF-LLPFLIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTIKDFLGFALLFIPLAALAL 245
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 329134189 246 FAPNLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
259-347 |
2.71e-37 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 129.52 E-value: 2.71e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 259 PANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLLPLLHTSKLRSMTFRPLSQILFWTLVANLLILTW 338
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
....*....
gi 329134189 339 VGSQPVEHP 347
Cdd:pfam00032 81 LGKQPPTGP 89
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
34-192 |
4.91e-34 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 124.82 E-value: 4.91e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 34 FGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLNKE- 112
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 113 -TWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIH-FLLPFLI 190
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
|
..
gi 329134189 191 AG 192
Cdd:PRK03735 204 AV 205
|
|
| petB |
CHL00070 |
cytochrome b6 |
25-191 |
6.28e-30 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 113.66 E-value: 6.28e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 25 PSNISSWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGIY 104
Cdd:CHL00070 27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329134189 105 YGSYLNKE--TWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAI 182
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186
|
170
....*....|
gi 329134189 183 H-FLLPFLIA 191
Cdd:CHL00070 187 HtFVLPLLTA 196
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
243-297 |
3.24e-11 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 60.79 E-value: 3.24e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 329134189 243 LALFAPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 297
Cdd:CHL00058 54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMAS 103
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
242-297 |
1.50e-10 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 59.04 E-value: 1.50e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 329134189 242 ALALFAPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 297
Cdd:COG5679 54 GLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAA 104
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
240-297 |
1.09e-09 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 56.73 E-value: 1.09e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 329134189 240 LAALALFAPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 297
Cdd:TIGR01156 51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
|
|
| |
