NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|319758432|gb|ADV70374|]
View 

hypothetical protein SSUJS14_1305 [Streptococcus suis JS14]

Protein Classification

DUF2500 domain-containing protein( domain architecture ID 10566452)

DUF2500 domain-containing protein similar to Escherichia coli YhhM

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF2500 pfam10694
Protein of unknown function (DUF2500); The members of this family are largely confined to the ...
 22-115 1.81e-30

Protein of unknown function (DUF2500); The members of this family are largely confined to the Gammaproteobacteria. The function is not known.


:

Pssm-ID: 431441  Cd Length: 100  Bit Score: 104.20  E-value: 1.81e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319758432   22 FSAIILATVCFHIIKNFMEWHHNNRAPKESCKAKLVSKRTHVFGNEV---ARTNYYVTFEWE-GKRQEFRLRSDEYALLA 97
Cdd:pfam10694   3 LFIIVIAIIIFLAVRGIRQWAKNNAAPVLTVQATVVDKREEVTTGGIpgsTSTRYYVTFELEsGDRIEFSVSGEEYGLLA 82

                          90
                  ....*....|....*...
gi 319758432   98 ERDVGTLHFQGTRFLGFE 115
Cdd:pfam10694  83 EGDQGKLTYQGTRFLGFE 100
 
Name Accession Description Interval E-value
DUF2500 pfam10694
Protein of unknown function (DUF2500); The members of this family are largely confined to the ...
 22-115 1.81e-30

Protein of unknown function (DUF2500); The members of this family are largely confined to the Gammaproteobacteria. The function is not known.


Pssm-ID: 431441  Cd Length: 100  Bit Score: 104.20  E-value: 1.81e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319758432   22 FSAIILATVCFHIIKNFMEWHHNNRAPKESCKAKLVSKRTHVFGNEV---ARTNYYVTFEWE-GKRQEFRLRSDEYALLA 97
Cdd:pfam10694   3 LFIIVIAIIIFLAVRGIRQWAKNNAAPVLTVQATVVDKREEVTTGGIpgsTSTRYYVTFELEsGDRIEFSVSGEEYGLLA 82

                          90
                  ....*....|....*...
gi 319758432   98 ERDVGTLHFQGTRFLGFE 115
Cdd:pfam10694  83 EGDQGKLTYQGTRFLGFE 100
 
Name Accession Description Interval E-value
DUF2500 pfam10694
Protein of unknown function (DUF2500); The members of this family are largely confined to the ...
 22-115 1.81e-30

Protein of unknown function (DUF2500); The members of this family are largely confined to the Gammaproteobacteria. The function is not known.


Pssm-ID: 431441  Cd Length: 100  Bit Score: 104.20  E-value: 1.81e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319758432   22 FSAIILATVCFHIIKNFMEWHHNNRAPKESCKAKLVSKRTHVFGNEV---ARTNYYVTFEWE-GKRQEFRLRSDEYALLA 97
Cdd:pfam10694   3 LFIIVIAIIIFLAVRGIRQWAKNNAAPVLTVQATVVDKREEVTTGGIpgsTSTRYYVTFELEsGDRIEFSVSGEEYGLLA 82

                          90
                  ....*....|....*...
gi 319758432   98 ERDVGTLHFQGTRFLGFE 115
Cdd:pfam10694  83 EGDQGKLTYQGTRFLGFE 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH