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Conserved domains on  [gi|316939615|gb|ADU73649|]
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(NiFe) hydrogenase maturation protein HypF [Acetivibrio thermocellus DSM 1313]

Protein Classification

carbamoyltransferase HypF( domain architecture ID 11414624)

carbamoyltransferase HypF is involved in the biosynthesis of the CN ligand of the NiFe(CN)(2)CO centre of [NiFe]-hydrogenase

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HypF COG0068
Hydrogenase maturation factor HypF (carbamoyltransferase) [Posttranslational modification, ...
9-753 0e+00

Hydrogenase maturation factor HypF (carbamoyltransferase) [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 439838 [Multi-domain]  Cd Length: 757  Bit Score: 1070.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615   9 ITKRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNIGGLVEIILQSSEEKYNEFLQDLKANAPVGSEITNIETEDIKERE 88
Cdd:COG0068    2 KRLRIRVRGIVQGVGFRPFVYRLAKELGLKGWVRNDGGGVEIEVEGEEEALEAFLEALRAEAPPLARIDSIEVEELPPEG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  89 FDGFRIIESKDDEEI-SIIPPDLPVCESCERELFTGTDRRFLNPFISCMSCGARYTIIEELPYDRHNTTMRDFDMCPACR 167
Cdd:COG0068   82 FDGFRILESEAGGGGrTLIPPDLATCDDCLRELFDPADRRYRYPFINCTNCGPRYTIIRALPYDRPNTSMAAFPMCPDCA 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 168 EEYTSPRNRRFHAQTISCNDCGPYLIFNDLTGGSELTEKDAFHAAANIIESGGIIAVKGIGGYHFACSPFLEDTVLRLRE 247
Cdd:COG0068  162 AEYEDPADRRFHAQPNACPVCGPQLWLLDADGKPLAEGDDAIAAAAELLRAGKIVAIKGLGGFHLACDATNEEAVARLRR 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 248 LKGREAKPFAIMFESVDSIRKYCVVSEKEEELLKSKARPIVLLYLKNNS-MAPSACQGSIYCGAFLPYTPLHMLLVKRCG 326
Cdd:COG0068  242 RKRRPAKPFAVMARDLETARRLCEVSEAEEALLTSPARPIVLLPKRPDSpLAPSVAPGLDTLGVMLPYTPLHHLLLDELG 321
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 327 -PLIMTSANISDKPIIKDDSEMLSLKSPLLNGVLYNKRRIVRSVDDSVAKVVANSPQLIRRSRGYVPYPVFLKNRKKdlQ 405
Cdd:COG0068  322 rPLVMTSGNLSGEPICIDNEEALERLSGIADYFLLHNRPIVNRVDDSVVRVIDGKPRFLRRARGYAPLPIPLPFELP--P 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 406 IFAAGSDLKAAFCLYKNGNAVMSQYFGDLEEKTVLERYKASFRDLCHLLKITPDIAVCDMHPNYHSSRFAENL---GIPL 482
Cdd:COG0068  400 VLALGAELKNTFCLAKGDQAFLSQHIGDLDNLETLEAFEETIEHLLRLYDVRPEVIACDLHPDYLSTRLAEELaerGLPL 479
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 483 TYVQHHHAHVASVMAEHHLKEQVIGVAFDGTGYGTDGKIWGGEFLICEGAEFKRVAHLRYIPVLGGDSSMRDAAKTAACF 562
Cdd:COG0068  480 IEVQHHHAHIAAVMAEHGLDGPVLGIALDGTGYGDDGTIWGGEFLLGDYAGFERVGHLRPFPLPGGDKAAREPWRMALAL 559
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 563 LLNLGLD-------QYVKDERKDIIKAALKNNINTVPTSSMGRLFDAVSSLLEIQYENRYEGECAAMLEKeavLALRHKi 635
Cdd:COG0068  560 LYEAGGEellepllKRFSEKELALLRQMLERGINSPLTSSAGRLFDAVAALLGICDEISYEGQAAMELEA---LADRAE- 635
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 636 EPKKLAFEIKRKSDLIEIDPKPMLKSMCH-LQNKDDTGSLALGFHYAVADMILEVCEIIRAEQKINTVALSGGVFQNTLL 714
Cdd:COG0068  636 EAEPYPFPLREIDGLLVLDWAPLLRALLEdLQAGVPPAEIAARFHNTLAEAIAELALRLAERTGIDTVALSGGVFQNRLL 715
                        730       740       750
                 ....*....|....*....|....*....|....*....
gi 316939615 715 MERTLKILRDRHFNVYYNMSVPPNDGSIGLGQTFIGLVR 753
Cdd:COG0068  716 LELLRARLEAAGFKVLLHRQVPPNDGGISLGQAAIAAAR 754
 
Name Accession Description Interval E-value
HypF COG0068
Hydrogenase maturation factor HypF (carbamoyltransferase) [Posttranslational modification, ...
9-753 0e+00

Hydrogenase maturation factor HypF (carbamoyltransferase) [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 439838 [Multi-domain]  Cd Length: 757  Bit Score: 1070.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615   9 ITKRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNIGGLVEIILQSSEEKYNEFLQDLKANAPVGSEITNIETEDIKERE 88
Cdd:COG0068    2 KRLRIRVRGIVQGVGFRPFVYRLAKELGLKGWVRNDGGGVEIEVEGEEEALEAFLEALRAEAPPLARIDSIEVEELPPEG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  89 FDGFRIIESKDDEEI-SIIPPDLPVCESCERELFTGTDRRFLNPFISCMSCGARYTIIEELPYDRHNTTMRDFDMCPACR 167
Cdd:COG0068   82 FDGFRILESEAGGGGrTLIPPDLATCDDCLRELFDPADRRYRYPFINCTNCGPRYTIIRALPYDRPNTSMAAFPMCPDCA 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 168 EEYTSPRNRRFHAQTISCNDCGPYLIFNDLTGGSELTEKDAFHAAANIIESGGIIAVKGIGGYHFACSPFLEDTVLRLRE 247
Cdd:COG0068  162 AEYEDPADRRFHAQPNACPVCGPQLWLLDADGKPLAEGDDAIAAAAELLRAGKIVAIKGLGGFHLACDATNEEAVARLRR 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 248 LKGREAKPFAIMFESVDSIRKYCVVSEKEEELLKSKARPIVLLYLKNNS-MAPSACQGSIYCGAFLPYTPLHMLLVKRCG 326
Cdd:COG0068  242 RKRRPAKPFAVMARDLETARRLCEVSEAEEALLTSPARPIVLLPKRPDSpLAPSVAPGLDTLGVMLPYTPLHHLLLDELG 321
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 327 -PLIMTSANISDKPIIKDDSEMLSLKSPLLNGVLYNKRRIVRSVDDSVAKVVANSPQLIRRSRGYVPYPVFLKNRKKdlQ 405
Cdd:COG0068  322 rPLVMTSGNLSGEPICIDNEEALERLSGIADYFLLHNRPIVNRVDDSVVRVIDGKPRFLRRARGYAPLPIPLPFELP--P 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 406 IFAAGSDLKAAFCLYKNGNAVMSQYFGDLEEKTVLERYKASFRDLCHLLKITPDIAVCDMHPNYHSSRFAENL---GIPL 482
Cdd:COG0068  400 VLALGAELKNTFCLAKGDQAFLSQHIGDLDNLETLEAFEETIEHLLRLYDVRPEVIACDLHPDYLSTRLAEELaerGLPL 479
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 483 TYVQHHHAHVASVMAEHHLKEQVIGVAFDGTGYGTDGKIWGGEFLICEGAEFKRVAHLRYIPVLGGDSSMRDAAKTAACF 562
Cdd:COG0068  480 IEVQHHHAHIAAVMAEHGLDGPVLGIALDGTGYGDDGTIWGGEFLLGDYAGFERVGHLRPFPLPGGDKAAREPWRMALAL 559
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 563 LLNLGLD-------QYVKDERKDIIKAALKNNINTVPTSSMGRLFDAVSSLLEIQYENRYEGECAAMLEKeavLALRHKi 635
Cdd:COG0068  560 LYEAGGEellepllKRFSEKELALLRQMLERGINSPLTSSAGRLFDAVAALLGICDEISYEGQAAMELEA---LADRAE- 635
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 636 EPKKLAFEIKRKSDLIEIDPKPMLKSMCH-LQNKDDTGSLALGFHYAVADMILEVCEIIRAEQKINTVALSGGVFQNTLL 714
Cdd:COG0068  636 EAEPYPFPLREIDGLLVLDWAPLLRALLEdLQAGVPPAEIAARFHNTLAEAIAELALRLAERTGIDTVALSGGVFQNRLL 715
                        730       740       750
                 ....*....|....*....|....*....|....*....
gi 316939615 715 MERTLKILRDRHFNVYYNMSVPPNDGSIGLGQTFIGLVR 753
Cdd:COG0068  716 LELLRARLEAAGFKVLLHRQVPPNDGGISLGQAAIAAAR 754
hypF TIGR00143
[NiFe] hydrogenase maturation protein HypF; A previously described regulatory effect of HypF ...
45-746 0e+00

[NiFe] hydrogenase maturation protein HypF; A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression. [Protein fate, Protein modification and repair]


Pssm-ID: 272929 [Multi-domain]  Cd Length: 711  Bit Score: 653.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615   45 GGLVEIILQSSEEKynEFLQDLKANAPVGSEITNIETEDIKERE-FDGFRIIESKDD--EEISIIPPDLPVCESCERELF 121
Cdd:TIGR00143   2 GDGVEIVLEADKEE--SFLNRLKKGLPPLARIEKIIIEPFDGAEhFTTFRIRESKNGglSLLSIIPADVATCSDCLEEML 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  122 TGTDRRFLNPFISCMSCGARYTIIEELPYDRHNTTMRDFDMCPACREEYTSPRNRRFHAQTISCNDCGPYLIFndLTGGS 201
Cdd:TIGR00143  80 DKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRCGPQLNF--VSRGG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  202 ELTEKDAFHAAANIIESGGIIAVKGIGGYHFACSPFLEDTVLRLRELKGREAKPFAIMFESVDSIRKYCVVSEKEEELLK 281
Cdd:TIGR00143 158 HAEQDDALLEAAKLLKKGKIIAIKGIGGFHLACDARNDEVVERLRLRKNRPLKPFAVMSPDLESAEQHAELNNLECELLT 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  282 SKARPIVLLYLKNNS-MAPSACQGSIYCGAFLPYTPLHMLLVKRCG-PLIMTSANISDKPIIKDDSEMLSLKSPLLNGVL 359
Cdd:TIGR00143 238 SPAAPIVLLRKKPDIkLAPNIAPNLPTIGVMLPYTPLHHLLLQLLAfPLVMTSANLPGLPMAIDNAEILDKLQGIADGFL 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  360 YNKRRIVRSVDDSVAKVVANSPQLIRRSRGYVPYPVFLKNRKKDLQIFAAGSDLKAAFCLYKNGNAVMSQYFGDLEEKTV 439
Cdd:TIGR00143 318 VHNRRIVNRVDDSVVQHVAGEILFLRRSRGFAPQPLTLPPNGNPKKILALGAELKNTFSLLKGGQAYLSQHIGDLSVYET 397
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  440 LERYKASFRDLCHLLKITPDIAVCDMHPNYHSSRFAENLGIPLTYVQHHHAHVASVMAEH-HLKEQVIGVAFDGTGYGTD 518
Cdd:TIGR00143 398 YKFFKEALNFFLRIYDFEPQDIVCDLHPQYNTTQYAEELSLPVLRVQHHHAHALAVMADAgVLEEAVIGITWDGVGYGED 477
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  519 GKIWGGEFLICEGAEFKRVAHLRYIPVLGGDSSMRDAAKTAACFL----LNLGLDQYVKDERKD----IIKAALKNNINT 590
Cdd:TIGR00143 478 GKIWGGECLLIDLGRIERLGRLEEFWLLGGDLATKYPLRILLSILlkhdLNDFLKRYQKYFKQEkelsVLQQALEKKINA 557
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  591 VPTSSMGRLFDAVSSLLEIQYENRYEGECAAMLEKEAVLALRHKIEPkklaFEIKRKS-DLIEIDPKPMLKsmchLQNKD 669
Cdd:TIGR00143 558 PLTTSTGRLFDAVAAALGLCGERTYEGEAAIALEALALRSDGIANYP----FEIKNKVlDLKEFYQRFLED----LLVGE 629
                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 316939615  670 DTGSLALGFHYAVADMILEVCEIIRAEQKINTVALSGGVFQNTLLMERTLKILRDRHFNVYYNMSVPPNDGSIGLGQ 746
Cdd:TIGR00143 630 DRSKIAHIAHKFVASGLVEIATAIAVPFGIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQ 706
Sua5_yciO_yrdC pfam01300
Telomere recombination; This domain has been shown to bind preferentially to dsRNA. The domain ...
214-385 3.00e-45

Telomere recombination; This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.


Pssm-ID: 460153 [Multi-domain]  Cd Length: 176  Bit Score: 159.60  E-value: 3.00e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  214 NIIESGGIIAVKGIGGYHFACSPFLEDTVLRLRELKGREA-KPFAIMFESVDSIRKYCvvSEKEEELLKSKAR----PIV 288
Cdd:pfam01300   1 EALRKGGIVAYPTDTVYGLGCDATNEEAVERLYEIKGRPRdKPLAVMVADLEDLKEYA--EEVEEAALRLAERfwpgPLT 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  289 LLYLKNNSMAPSA-CQGSIYCGAFLPYTPLHMLLVKRCG-PLIMTSANISDKPIIKDDSEMLSLKSPLLNGVLYNKrRIV 366
Cdd:pfam01300  79 LVLKASKKPLPKLlTPGLGTVGVRLPDHPLALLLLEALGePLVATSANLSGEPSPTDAEEILEELGGRVDLILDGG-RIA 157
                         170
                  ....*....|....*....
gi 316939615  367 RSVDDSVAKVVANSPQLIR 385
Cdd:pfam01300 158 GGVPSTVVDLTGGPPRILR 176
PRK14431 PRK14431
acylphosphatase; Provisional
11-95 3.84e-15

acylphosphatase; Provisional


Pssm-ID: 184677  Cd Length: 89  Bit Score: 71.37  E-value: 3.84e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  11 KRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNIGGLVEIILQSSEEKYNEFLQDLKANAPVGSEITNIETEDIK-EREF 89
Cdd:PRK14431   4 IHLQVFGRVQGVGFRYFTQRIAMNYNIVGTVQNVDDYVEIYAQGDDADLERFIQGVIEGASPASNVTSYQLEELElNQKL 83

                 ....*.
gi 316939615  90 DGFRII 95
Cdd:PRK14431  84 SDFRSI 89
ASKHA_NBD_MJ1051-like_N cd24100
N-terminal nucleotide-binding domain (NBD) of Methanocaldococcus jannaschii protein MJ1051 and ...
681-745 9.27e-04

N-terminal nucleotide-binding domain (NBD) of Methanocaldococcus jannaschii protein MJ1051 and similar proteins; The family includes a group of uncharacterized proteins similar to Methanocaldococcus jannaschii protein MJ1051 and protein MJ1058. Members of this family consist of two domains. The model corresponds to the N-terminal Kae1-like domain.


Pssm-ID: 466950 [Multi-domain]  Cd Length: 238  Bit Score: 41.69  E-value: 9.27e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 316939615 681 AVADMILE--VCEIIR---AEQKINTVALSGGVFQNTLLMertLKILRDRHFNvyyNMSVPPN--DGSIGLG 745
Cdd:cd24100  165 AAVQRVLEevVVEWVKnalKKTGIKNLALAGGVFANVKLN---QRIAELPEVE---NLFVFPSmgDGGLALG 230
 
Name Accession Description Interval E-value
HypF COG0068
Hydrogenase maturation factor HypF (carbamoyltransferase) [Posttranslational modification, ...
9-753 0e+00

Hydrogenase maturation factor HypF (carbamoyltransferase) [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 439838 [Multi-domain]  Cd Length: 757  Bit Score: 1070.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615   9 ITKRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNIGGLVEIILQSSEEKYNEFLQDLKANAPVGSEITNIETEDIKERE 88
Cdd:COG0068    2 KRLRIRVRGIVQGVGFRPFVYRLAKELGLKGWVRNDGGGVEIEVEGEEEALEAFLEALRAEAPPLARIDSIEVEELPPEG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  89 FDGFRIIESKDDEEI-SIIPPDLPVCESCERELFTGTDRRFLNPFISCMSCGARYTIIEELPYDRHNTTMRDFDMCPACR 167
Cdd:COG0068   82 FDGFRILESEAGGGGrTLIPPDLATCDDCLRELFDPADRRYRYPFINCTNCGPRYTIIRALPYDRPNTSMAAFPMCPDCA 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 168 EEYTSPRNRRFHAQTISCNDCGPYLIFNDLTGGSELTEKDAFHAAANIIESGGIIAVKGIGGYHFACSPFLEDTVLRLRE 247
Cdd:COG0068  162 AEYEDPADRRFHAQPNACPVCGPQLWLLDADGKPLAEGDDAIAAAAELLRAGKIVAIKGLGGFHLACDATNEEAVARLRR 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 248 LKGREAKPFAIMFESVDSIRKYCVVSEKEEELLKSKARPIVLLYLKNNS-MAPSACQGSIYCGAFLPYTPLHMLLVKRCG 326
Cdd:COG0068  242 RKRRPAKPFAVMARDLETARRLCEVSEAEEALLTSPARPIVLLPKRPDSpLAPSVAPGLDTLGVMLPYTPLHHLLLDELG 321
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 327 -PLIMTSANISDKPIIKDDSEMLSLKSPLLNGVLYNKRRIVRSVDDSVAKVVANSPQLIRRSRGYVPYPVFLKNRKKdlQ 405
Cdd:COG0068  322 rPLVMTSGNLSGEPICIDNEEALERLSGIADYFLLHNRPIVNRVDDSVVRVIDGKPRFLRRARGYAPLPIPLPFELP--P 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 406 IFAAGSDLKAAFCLYKNGNAVMSQYFGDLEEKTVLERYKASFRDLCHLLKITPDIAVCDMHPNYHSSRFAENL---GIPL 482
Cdd:COG0068  400 VLALGAELKNTFCLAKGDQAFLSQHIGDLDNLETLEAFEETIEHLLRLYDVRPEVIACDLHPDYLSTRLAEELaerGLPL 479
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 483 TYVQHHHAHVASVMAEHHLKEQVIGVAFDGTGYGTDGKIWGGEFLICEGAEFKRVAHLRYIPVLGGDSSMRDAAKTAACF 562
Cdd:COG0068  480 IEVQHHHAHIAAVMAEHGLDGPVLGIALDGTGYGDDGTIWGGEFLLGDYAGFERVGHLRPFPLPGGDKAAREPWRMALAL 559
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 563 LLNLGLD-------QYVKDERKDIIKAALKNNINTVPTSSMGRLFDAVSSLLEIQYENRYEGECAAMLEKeavLALRHKi 635
Cdd:COG0068  560 LYEAGGEellepllKRFSEKELALLRQMLERGINSPLTSSAGRLFDAVAALLGICDEISYEGQAAMELEA---LADRAE- 635
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 636 EPKKLAFEIKRKSDLIEIDPKPMLKSMCH-LQNKDDTGSLALGFHYAVADMILEVCEIIRAEQKINTVALSGGVFQNTLL 714
Cdd:COG0068  636 EAEPYPFPLREIDGLLVLDWAPLLRALLEdLQAGVPPAEIAARFHNTLAEAIAELALRLAERTGIDTVALSGGVFQNRLL 715
                        730       740       750
                 ....*....|....*....|....*....|....*....
gi 316939615 715 MERTLKILRDRHFNVYYNMSVPPNDGSIGLGQTFIGLVR 753
Cdd:COG0068  716 LELLRARLEAAGFKVLLHRQVPPNDGGISLGQAAIAAAR 754
hypF TIGR00143
[NiFe] hydrogenase maturation protein HypF; A previously described regulatory effect of HypF ...
45-746 0e+00

[NiFe] hydrogenase maturation protein HypF; A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression. [Protein fate, Protein modification and repair]


Pssm-ID: 272929 [Multi-domain]  Cd Length: 711  Bit Score: 653.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615   45 GGLVEIILQSSEEKynEFLQDLKANAPVGSEITNIETEDIKERE-FDGFRIIESKDD--EEISIIPPDLPVCESCERELF 121
Cdd:TIGR00143   2 GDGVEIVLEADKEE--SFLNRLKKGLPPLARIEKIIIEPFDGAEhFTTFRIRESKNGglSLLSIIPADVATCSDCLEEML 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  122 TGTDRRFLNPFISCMSCGARYTIIEELPYDRHNTTMRDFDMCPACREEYTSPRNRRFHAQTISCNDCGPYLIFndLTGGS 201
Cdd:TIGR00143  80 DKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRCGPQLNF--VSRGG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  202 ELTEKDAFHAAANIIESGGIIAVKGIGGYHFACSPFLEDTVLRLRELKGREAKPFAIMFESVDSIRKYCVVSEKEEELLK 281
Cdd:TIGR00143 158 HAEQDDALLEAAKLLKKGKIIAIKGIGGFHLACDARNDEVVERLRLRKNRPLKPFAVMSPDLESAEQHAELNNLECELLT 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  282 SKARPIVLLYLKNNS-MAPSACQGSIYCGAFLPYTPLHMLLVKRCG-PLIMTSANISDKPIIKDDSEMLSLKSPLLNGVL 359
Cdd:TIGR00143 238 SPAAPIVLLRKKPDIkLAPNIAPNLPTIGVMLPYTPLHHLLLQLLAfPLVMTSANLPGLPMAIDNAEILDKLQGIADGFL 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  360 YNKRRIVRSVDDSVAKVVANSPQLIRRSRGYVPYPVFLKNRKKDLQIFAAGSDLKAAFCLYKNGNAVMSQYFGDLEEKTV 439
Cdd:TIGR00143 318 VHNRRIVNRVDDSVVQHVAGEILFLRRSRGFAPQPLTLPPNGNPKKILALGAELKNTFSLLKGGQAYLSQHIGDLSVYET 397
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  440 LERYKASFRDLCHLLKITPDIAVCDMHPNYHSSRFAENLGIPLTYVQHHHAHVASVMAEH-HLKEQVIGVAFDGTGYGTD 518
Cdd:TIGR00143 398 YKFFKEALNFFLRIYDFEPQDIVCDLHPQYNTTQYAEELSLPVLRVQHHHAHALAVMADAgVLEEAVIGITWDGVGYGED 477
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  519 GKIWGGEFLICEGAEFKRVAHLRYIPVLGGDSSMRDAAKTAACFL----LNLGLDQYVKDERKD----IIKAALKNNINT 590
Cdd:TIGR00143 478 GKIWGGECLLIDLGRIERLGRLEEFWLLGGDLATKYPLRILLSILlkhdLNDFLKRYQKYFKQEkelsVLQQALEKKINA 557
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  591 VPTSSMGRLFDAVSSLLEIQYENRYEGECAAMLEKEAVLALRHKIEPkklaFEIKRKS-DLIEIDPKPMLKsmchLQNKD 669
Cdd:TIGR00143 558 PLTTSTGRLFDAVAAALGLCGERTYEGEAAIALEALALRSDGIANYP----FEIKNKVlDLKEFYQRFLED----LLVGE 629
                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 316939615  670 DTGSLALGFHYAVADMILEVCEIIRAEQKINTVALSGGVFQNTLLMERTLKILRDRHFNVYYNMSVPPNDGSIGLGQ 746
Cdd:TIGR00143 630 DRSKIAHIAHKFVASGLVEIATAIAVPFGIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQ 706
Sua5_yciO_yrdC pfam01300
Telomere recombination; This domain has been shown to bind preferentially to dsRNA. The domain ...
214-385 3.00e-45

Telomere recombination; This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.


Pssm-ID: 460153 [Multi-domain]  Cd Length: 176  Bit Score: 159.60  E-value: 3.00e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  214 NIIESGGIIAVKGIGGYHFACSPFLEDTVLRLRELKGREA-KPFAIMFESVDSIRKYCvvSEKEEELLKSKAR----PIV 288
Cdd:pfam01300   1 EALRKGGIVAYPTDTVYGLGCDATNEEAVERLYEIKGRPRdKPLAVMVADLEDLKEYA--EEVEEAALRLAERfwpgPLT 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  289 LLYLKNNSMAPSA-CQGSIYCGAFLPYTPLHMLLVKRCG-PLIMTSANISDKPIIKDDSEMLSLKSPLLNGVLYNKrRIV 366
Cdd:pfam01300  79 LVLKASKKPLPKLlTPGLGTVGVRLPDHPLALLLLEALGePLVATSANLSGEPSPTDAEEILEELGGRVDLILDGG-RIA 157
                         170
                  ....*....|....*....
gi 316939615  367 RSVDDSVAKVVANSPQLIR 385
Cdd:pfam01300 158 GGVPSTVVDLTGGPPRILR 176
HypF_C pfam17788
HypF Kae1-like domain; This domain is found in the HypF protein. In the structure it is one of ...
401-498 9.37e-44

HypF Kae1-like domain; This domain is found in the HypF protein. In the structure it is one of the two subdomains of the Kae1 domain.


Pssm-ID: 436045 [Multi-domain]  Cd Length: 99  Bit Score: 152.63  E-value: 9.37e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  401 KKDLQIFAAGSDLKAAFCLYKNGNAVMSQYFGDLEEKTVLERYKASFRDLCHLLKITPDIAVCDMHPNYHSSRFAENL-G 479
Cdd:pfam17788   1 KAKPPVLALGAELKNTFALAKGGQAFLSQHIGDLDNLETLEAFEETLEHLLRLYGIKPEVIACDLHPDYLSTRLAEELnG 80
                          90
                  ....*....|....*....
gi 316939615  480 IPLTYVQHHHAHVASVMAE 498
Cdd:pfam17788  81 LPLIEVQHHHAHIAAVMAE 99
Acylphosphatase pfam00708
Acylphosphatase;
11-94 1.48e-25

Acylphosphatase;


Pssm-ID: 425830  Cd Length: 85  Bit Score: 100.74  E-value: 1.48e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615   11 KRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNIG-GLVEIILQSSEEKYNEFLQDLKaNAPVGSEITNIETEDIKER-E 88
Cdd:pfam00708   1 KKVLVTGRVQGVGFRPFVYRLAKELGLKGWVRNLPdGSVEIVVQGPEEDVDKFLEWLK-SGPPPARVDKVEVTEIDEPgD 79

                  ....*.
gi 316939615   89 FDGFRI 94
Cdd:pfam00708  80 FSGFEI 85
AcyP COG1254
Acylphosphatase [Energy production and conversion];
9-95 2.01e-22

Acylphosphatase [Energy production and conversion];


Pssm-ID: 440866  Cd Length: 89  Bit Score: 91.75  E-value: 2.01e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615   9 ITKRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYNEFLQDLKANaPVGSEITNIETEDIKER 87
Cdd:COG1254    2 KRVRIIVSGRVQGVGFRAFTRRQARRLGLTGWVRNLpDGSVEVVAEGEEEAVEAFLEWLRKG-PPAARVEDVEVEEEEPT 80

                 ....*....
gi 316939615  88 -EFDGFRII 95
Cdd:COG1254   81 gEFEGFEIR 89
PRK14431 PRK14431
acylphosphatase; Provisional
11-95 3.84e-15

acylphosphatase; Provisional


Pssm-ID: 184677  Cd Length: 89  Bit Score: 71.37  E-value: 3.84e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  11 KRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNIGGLVEIILQSSEEKYNEFLQDLKANAPVGSEITNIETEDIK-EREF 89
Cdd:PRK14431   4 IHLQVFGRVQGVGFRYFTQRIAMNYNIVGTVQNVDDYVEIYAQGDDADLERFIQGVIEGASPASNVTSYQLEELElNQKL 83

                 ....*.
gi 316939615  90 DGFRII 95
Cdd:PRK14431  84 SDFRSI 89
zf-HYPF pfam07503
HypF finger; The HypF family of proteins are involved in the maturation and regulation of ...
163-192 8.29e-14

HypF finger; The HypF family of proteins are involved in the maturation and regulation of hydrogenase. In the N-terminus they appear to have two Zinc finger domains, as modelled by this family.


Pssm-ID: 462187 [Multi-domain]  Cd Length: 33  Bit Score: 65.45  E-value: 8.29e-14
                          10        20        30
                  ....*....|....*....|....*....|
gi 316939615  163 CPACREEYTSPRNRRFHAQTISCNDCGPYL 192
Cdd:pfam07503   1 CPDCLREYFDPLDRRFHAQFIACTNCGPRL 30
PRK14420 PRK14420
acylphosphatase; Provisional
12-97 9.82e-12

acylphosphatase; Provisional


Pssm-ID: 237710  Cd Length: 91  Bit Score: 61.74  E-value: 9.82e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  12 RITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYNEFLQDLKANAPVgSEITNIETEDIKERE-F 89
Cdd:PRK14420   5 HIIVDGRVQGVGFRYFVQMEADKRKLTGWVKNRdDGTVEIEAEGPEEALQLFLDAIEKGSPF-SKVTDVHIEERDVLSgE 83

                 ....*...
gi 316939615  90 DGFRIIES 97
Cdd:PRK14420  84 KQFRIMYG 91
TIGR00057 TIGR00057
tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family; Has ...
202-339 2.82e-11

tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family; Has paralogs, but YrdC called a tRNA modification protein. Ref 2 authors say probably heteromultimeric complex. Paralogs may mean its does the final binding to the tRNA. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 272879 [Multi-domain]  Cd Length: 201  Bit Score: 63.50  E-value: 2.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  202 ELTEKDAFHAAANIIESGGIIAVKGIGGYHFACSPFLEDTVLRLRELKGREA-KPFAIMFESVDSIRKYCVVSEKEEELL 280
Cdd:TIGR00057   4 ENPSQRGIEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYRIKGRPSnKPLTVLVSDLSEIEKYAYVPDDAKRLM 83
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 316939615  281 KSKAR-PIVLLYLKNNSMAPSACQGSIYCGAFLPYTPLHMLLVKRCG-PLIMTSANISDKP 339
Cdd:TIGR00057  84 KKFWPgPLTLVLKKTPEIPRRVSGKRKTIGIRVPDNPIALELLEELGkPIVATSANLSGKP 144
PRK14435 PRK14435
acylphosphatase; Provisional
12-94 4.72e-11

acylphosphatase; Provisional


Pssm-ID: 184681  Cd Length: 90  Bit Score: 59.54  E-value: 4.72e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  12 RITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYNEFLQDLKANAPVGSeITNIETEDIKEREFD 90
Cdd:PRK14435   5 KIRVEGIVQGVGFRYFTRRVAKSLGVKGYVMNMdDGSVFIHAEGDENALRRFLNEVAKGPPAAV-VTNVSVEETTPEGYE 83

                 ....
gi 316939615  91 GFRI 94
Cdd:PRK14435  84 DFTI 87
zf-HYPF pfam07503
HypF finger; The HypF family of proteins are involved in the maturation and regulation of ...
113-145 1.17e-10

HypF finger; The HypF family of proteins are involved in the maturation and regulation of hydrogenase. In the N-terminus they appear to have two Zinc finger domains, as modelled by this family.


Pssm-ID: 462187 [Multi-domain]  Cd Length: 33  Bit Score: 56.59  E-value: 1.17e-10
                          10        20        30
                  ....*....|....*....|....*....|...
gi 316939615  113 CESCERELFTGTDRRFLNPFISCMSCGARYTII 145
Cdd:pfam07503   1 CPDCLREYFDPLDRRFHAQFIACTNCGPRLSLI 33
PRK14426 PRK14426
acylphosphatase; Provisional
15-94 1.68e-10

acylphosphatase; Provisional


Pssm-ID: 184675  Cd Length: 92  Bit Score: 58.11  E-value: 1.68e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  15 VSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYNEFLQDLKANAPVGSEITNIETEDIK-EREFDGF 92
Cdd:PRK14426  10 VYGRVQGVGFRYHTQHEALKLGLTGYAKNLdDGSVEVVACGEEEQVEKLMEWLKEGGPRSARVDRVLTEPHSpRGELTGF 89

                 ..
gi 316939615  93 RI 94
Cdd:PRK14426  90 SI 91
TsaC COG0009
tRNA A37 threonylcarbamoyladenosine synthetase subunit TsaC/SUA5/YrdC [Translation, ribosomal ...
206-339 1.73e-10

tRNA A37 threonylcarbamoyladenosine synthetase subunit TsaC/SUA5/YrdC [Translation, ribosomal structure and biogenesis]; tRNA A37 threonylcarbamoyladenosine synthetase subunit TsaC/SUA5/YrdC is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 439780 [Multi-domain]  Cd Length: 204  Bit Score: 61.26  E-value: 1.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615 206 KDAFHAAANIIESGGIIA-----VKGIGgyhfaCSPFLEDTVLRLRELKGREA-KPFAIMFESVDSIRKYC-VVSEKEEE 278
Cdd:COG0009    9 PRLIEQAAEALRAGGVVAyptdtVYGLG-----CDALNKEAVERIFAIKGRPRdKPLIVLVADLSQLEEYAkEVPDAARR 83
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 316939615 279 LLKS----------KARPIVLLYL--KNNSMApsacqgsIYCgaflpytPLHML---LVKRCG-PLIMTSANISDKP 339
Cdd:COG0009   84 LAKAfwpgpltlilPATKEVPDLLtgGRDTVA-------VRV-------PDHPValaLLRALGpPLASTSANLSGEP 146
PRK14445 PRK14445
acylphosphatase; Provisional
12-95 1.96e-10

acylphosphatase; Provisional


Pssm-ID: 172921  Cd Length: 91  Bit Score: 57.93  E-value: 1.96e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  12 RITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYNEFLQDLKAnAPVGSEITNIEtedIKEREFD 90
Cdd:PRK14445   7 HLIVSGLVQGVGFRMFIDRAASELNLSGWVRNLpDGTVEIEAQGSSGMIDELIKQAER-GPSRSSVTSIM---VEELEPD 82

                 ....*....
gi 316939615  91 ----GFRII 95
Cdd:PRK14445  83 sslkGFSII 91
PRK14448 PRK14448
acylphosphatase; Provisional
9-94 2.39e-10

acylphosphatase; Provisional


Pssm-ID: 172924  Cd Length: 90  Bit Score: 57.46  E-value: 2.39e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615   9 ITKRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNIG-GLVEIILQSSEEKYNEFlQDLKANAPVGSEITNIETED-IKE 86
Cdd:PRK14448   2 LKKQFIVYGHVQGVGFRYFTWQEATKIGIKGYVKNRPdGSVEVVAVGSDAQIAAF-RDWLQHGPPTAVVCNVIEQDyQGS 80

                 ....*...
gi 316939615  87 REFDGFRI 94
Cdd:PRK14448  81 RQFTHFSV 88
PRK14434 PRK14434
acylphosphatase; Provisional
12-94 1.05e-07

acylphosphatase; Provisional


Pssm-ID: 184680  Cd Length: 92  Bit Score: 50.14  E-value: 1.05e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  12 RITVSGIVQGVGFRPFVHNIAKKHG-IPGTV-RNIGGLVEIILQS-SEEKYNEFLQDLKANAPVGSEITNIETEDIKERE 88
Cdd:PRK14434   5 RMIVSGRVQGVGFRYSVYSLALEIGdIYGRVwNNDDGTVEILAQSdDSAKLAKFIQEIRKGPSKWAKVTYVDVTMANFED 84

                 ....*.
gi 316939615  89 FDGFRI 94
Cdd:PRK14434  85 FSDFKI 90
PRK14433 PRK14433
acylphosphatase; Provisional
11-94 1.33e-07

acylphosphatase; Provisional


Pssm-ID: 184679  Cd Length: 87  Bit Score: 49.81  E-value: 1.33e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  11 KRIT--VSGIVQGVGFRPFVHNIAKKHGIPGTVRNIG-GLVEIILQSSEEKYNEFLQDLKaNAPVGSEITNIETEDIKER 87
Cdd:PRK14433   1 MRLTalVSGRVQGVGYRAFVQKKARELGLSGYAENLSdGRVEVVAEGPKEALERLLHWLR-RGPRHARVEAVDVQWSEAT 79

                 ....*..
gi 316939615  88 EFDGFRI 94
Cdd:PRK14433  80 GLKGFHV 86
PRK14428 PRK14428
acylphosphatase; Provisional
9-84 1.68e-07

acylphosphatase; Provisional


Pssm-ID: 172904  Cd Length: 97  Bit Score: 49.74  E-value: 1.68e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 316939615   9 ITKRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYNEFLQDLkANAPVGSEITNIETEDI 84
Cdd:PRK14428   8 VRKHIVVTGLVQGVGFRYFTVTQARRLGVQGWVRNCrDGSVELEAQGSSDAVQALVEQL-AIGPRWSEVSHVAVHDM 83
PRK14450 PRK14450
acylphosphatase; Provisional
12-82 2.93e-07

acylphosphatase; Provisional


Pssm-ID: 184683  Cd Length: 91  Bit Score: 49.07  E-value: 2.93e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 316939615  12 RITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNI--GGLVEIILQSSEEKYNEFLqDLKANAPVGSEITNIETE 82
Cdd:PRK14450   5 KAIVKGKVQGVYFRDFTRTQATRLGLCGYAKNLanGNEVEVVAEGDKDSLLEFL-DLLRSGPPRAEVKEVETS 76
PRK14432 PRK14432
acylphosphatase; Provisional
15-94 4.00e-07

acylphosphatase; Provisional


Pssm-ID: 184678  Cd Length: 93  Bit Score: 48.75  E-value: 4.00e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  15 VSGIVQGVGFRPFVHNIAKKHGIPGTVRNIG-GLVEIILQSSEEKYNEFLQDLKANAPVGSEITNIETEDIKER---EFD 90
Cdd:PRK14432   8 ISGKVQGVGFRFFTEQIANNMKLKGFVKNLNdGRVEIVAFFNTKEQMKKFEKLLKNGNKYSNIENIEKKVLDENypfQFN 87

                 ....
gi 316939615  91 GFRI 94
Cdd:PRK14432  88 DFKI 91
PRK14440 PRK14440
acylphosphatase; Provisional
15-80 4.35e-07

acylphosphatase; Provisional


Pssm-ID: 172916  Cd Length: 90  Bit Score: 48.27  E-value: 4.35e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 316939615  15 VSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYNEFLQDLKANAPVgSEITNIE 80
Cdd:PRK14440   9 VYGLVQGVGFRKFVQIHAIRLGIKGYAKNLpDGSVEVVAEGYEEALSKLLERIKQGPPA-AEVEKVD 74
PRK14443 PRK14443
acylphosphatase; Provisional
10-79 5.04e-07

acylphosphatase; Provisional


Pssm-ID: 172919  Cd Length: 93  Bit Score: 48.13  E-value: 5.04e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 316939615  10 TKRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYNEFLQDLKANAPVGSEITNI 79
Cdd:PRK14443   5 TAILRVTGFVQGVGFRYTTKHVAYKYDISGTVKNLdDGSVEIHAIAEEENLNKFIDAIKKGPSPGCRIEHV 75
PRK14427 PRK14427
acylphosphatase; Provisional
2-95 2.07e-06

acylphosphatase; Provisional


Pssm-ID: 172903  Cd Length: 94  Bit Score: 46.41  E-value: 2.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615   2 DKGKSKSITKRITvsGIVQGVGFRPFVHNIAKKHGIPGTVRNIG-GLVEIILQSSEEKYNEFLQDLKAN-APVGSEITNI 79
Cdd:PRK14427   1 PAAHQVRLSARVF--GVVQGVGFRYWTMRKAEELGLTGTVRNLDdGSVALVAEGTGEQVEKLLDWLNSDrAPGRVERVDH 78
                         90
                 ....*....|....*.
gi 316939615  80 ETEDIkEREFDGFRII 95
Cdd:PRK14427  79 TVSEA-TGEFREFRAR 93
PRK14436 PRK14436
acylphosphatase; Provisional
13-95 2.09e-06

acylphosphatase; Provisional


Pssm-ID: 172912  Cd Length: 91  Bit Score: 46.50  E-value: 2.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  13 ITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYnEFLQDLKANAPVGSEITNIETEDIKEREFDG 91
Cdd:PRK14436   8 LRIYGRVQGVGFRWSMQREARKLGVNGWVRNLpDGSVEAVLEGDEERV-EALIGWAHQGPPLARVTRVEVKWEEPKGEKG 86

                 ....
gi 316939615  92 FRII 95
Cdd:PRK14436  87 FRVV 90
PRK14442 PRK14442
acylphosphatase; Provisional
9-94 2.38e-06

acylphosphatase; Provisional


Pssm-ID: 172918  Cd Length: 91  Bit Score: 46.41  E-value: 2.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615   9 ITKRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNIG-GLVEIILQSSEEKYNEfLQDLKANAPVGSEITNIETEDIKER 87
Cdd:PRK14442   4 ICLHAYVGGRVQGVGFRQATREEADRLELDGWVRNLDdGRVEVVWEGEEDRAKA-LERWLGRGPRHAEVSAVEVEQMPLQ 82

                 ....*..
gi 316939615  88 EFDGFRI 94
Cdd:PRK14442  83 GIAGFVV 89
PRK14451 PRK14451
acylphosphatase; Provisional
9-94 3.44e-06

acylphosphatase; Provisional


Pssm-ID: 237715  Cd Length: 89  Bit Score: 45.69  E-value: 3.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615   9 ITKRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNIG-GLVEIILQSSEEKYNEFLQDLKaNAPVGSEITNIETEDIKER 87
Cdd:PRK14451   3 LCMRCYISGRVQGVWFRASAKKLAEQLMISGWARNLAdGRVEVFACGKEDKLEEFYTWLQ-KGPLNARVDVCTRENLPWQ 81

                 ....*..
gi 316939615  88 EFDGFRI 94
Cdd:PRK14451  82 DYISFDV 88
PRK14425 PRK14425
acylphosphatase; Provisional
12-94 4.40e-06

acylphosphatase; Provisional


Pssm-ID: 172901  Cd Length: 94  Bit Score: 45.62  E-value: 4.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  12 RITVSGIVQGVGFRPFVHNIAKKHGIPGTVRN-IGGLVEIILQSSEEKYNEFLQDLKaNAPVGSEITNIETEDIKEREF- 89
Cdd:PRK14425   9 RVRITGRVQGVGFRDWTRDEAERLGLTGWVRNeSDGSVTALIAGPDSAISAMIERFR-RGPPGASVSGVETEAAQLEEAp 87

                 ....*
gi 316939615  90 DGFRI 94
Cdd:PRK14425  88 TDFRI 92
PRK14421 PRK14421
acylphosphatase; Provisional
9-83 1.18e-05

acylphosphatase; Provisional


Pssm-ID: 237711 [Multi-domain]  Cd Length: 99  Bit Score: 44.41  E-value: 1.18e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 316939615   9 ITKRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRN-IGGLVEIILQSSEEKYNEFLQDLKaNAPVGSEITNIETED 83
Cdd:PRK14421   4 IVRQVTIRGRVQGVGYRAWVARTAEALGLEGWVRNrRDGSVEALFAGPADAVAEMIARCR-RGPSAARVDAVEDEP 78
PRK14449 PRK14449
acylphosphatase; Provisional
10-94 3.53e-05

acylphosphatase; Provisional


Pssm-ID: 184682  Cd Length: 90  Bit Score: 42.89  E-value: 3.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  10 TKRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYNEFLQDLKaNAPVGSEITNIEtEDIKERE 88
Cdd:PRK14449   4 TVHLRITGHVQGVGLRYSVYQKAVSLGITGYAENLyDGSVEVVAEGDEENIKELINFIK-TGLRWARVDNVE-ERWSDYK 81

                 ....*...
gi 316939615  89 --FDGFRI 94
Cdd:PRK14449  82 geYRDFRI 89
PRK14423 PRK14423
acylphosphatase; Provisional
15-94 4.85e-05

acylphosphatase; Provisional


Pssm-ID: 237713  Cd Length: 92  Bit Score: 42.74  E-value: 4.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  15 VSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYNEFLQDLKANAPvGSEITNIETEDIKEREFDGFR 93
Cdd:PRK14423  11 VSGRVQGVYYRASTRDTARELGVDGWVRNLdDGRVEAVFEGPRDAVEAMVEWCHEGSP-AAVVEDVEVEYEEPEGLDGFE 89

                 .
gi 316939615  94 I 94
Cdd:PRK14423  90 I 90
PRK14429 PRK14429
acylphosphatase; Provisional
11-90 5.89e-05

acylphosphatase; Provisional


Pssm-ID: 184676  Cd Length: 90  Bit Score: 42.40  E-value: 5.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  11 KR--ITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYNEFLqdlkANAPVGSEITNIETEDIKER 87
Cdd:PRK14429   2 KRvlIKLTGKVQGVGCRRATLTKARALGVTGYVTNCeDGSVEILAQGSDPAVDNLI----AWCEVGVPCTEVLRVTVEED 77

                 ...
gi 316939615  88 EFD 90
Cdd:PRK14429  78 EAD 80
PRK14430 PRK14430
acylphosphatase; Provisional
10-92 1.94e-04

acylphosphatase; Provisional


Pssm-ID: 172906  Cd Length: 92  Bit Score: 41.06  E-value: 1.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  10 TKRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRN-IGGLVEIILQSSEEKYnEFLQDLKANAPVGSEITNIETEDiKERE 88
Cdd:PRK14430   5 TWRLVAHGRVQGVGYRAACADAADDLGLGGWVRNrADGTVEVMASGTVRQL-EALRAWMEAGPPAAQVTKVEVGP-GAGE 82

                 ....
gi 316939615  89 FDGF 92
Cdd:PRK14430  83 FAGF 86
PRK14447 PRK14447
acylphosphatase; Provisional
13-95 2.45e-04

acylphosphatase; Provisional


Pssm-ID: 172923  Cd Length: 95  Bit Score: 40.69  E-value: 2.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  13 ITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNI--GGLVEIILQSSEEKYNEFLQDLKANAPvGSEITNIET--EDIKErE 88
Cdd:PRK14447   8 LFIRGKVQGVFFRQSMKEVANRNGVRGWVRNRsdGRTVEAVLEGPRDAVLKVIEWARVGPP-GARVEDVEVkwEEYKG-E 85

                 ....*..
gi 316939615  89 FDGFRII 95
Cdd:PRK14447  86 FQDFRIL 92
PRK14424 PRK14424
acylphosphatase; Provisional
10-92 6.60e-04

acylphosphatase; Provisional


Pssm-ID: 184674  Cd Length: 94  Bit Score: 39.44  E-value: 6.60e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  10 TKRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYNEFLQDLKaNAPVGSEITNIETED-IKER 87
Cdd:PRK14424   8 TYYVRVRGVVQGVGFRHATVREAHALGLRGWVANLeDGTVEAMIQGPAAQIDRMLAWLR-HGPPAARVTEVTFEErRTEK 86

                 ....*
gi 316939615  88 EFDGF 92
Cdd:PRK14424  87 RFERF 91
PRK14439 PRK14439
acylphosphatase; Provisional
15-94 9.17e-04

acylphosphatase; Provisional


Pssm-ID: 237714  Cd Length: 163  Bit Score: 40.84  E-value: 9.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  15 VSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYNEFLQDLKANAPVGSEITNIETEDIKER-EFDGF 92
Cdd:PRK14439  81 VYGRVQGVGFRYTTQYEAKKLGLTGYAKNLdDGSVEVVACGEEGQVEKLMQWLKSGGPRSARVERVLSEPHHPSgELTDF 160

                 ..
gi 316939615  93 RI 94
Cdd:PRK14439 161 RI 162
ASKHA_NBD_MJ1051-like_N cd24100
N-terminal nucleotide-binding domain (NBD) of Methanocaldococcus jannaschii protein MJ1051 and ...
681-745 9.27e-04

N-terminal nucleotide-binding domain (NBD) of Methanocaldococcus jannaschii protein MJ1051 and similar proteins; The family includes a group of uncharacterized proteins similar to Methanocaldococcus jannaschii protein MJ1051 and protein MJ1058. Members of this family consist of two domains. The model corresponds to the N-terminal Kae1-like domain.


Pssm-ID: 466950 [Multi-domain]  Cd Length: 238  Bit Score: 41.69  E-value: 9.27e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 316939615 681 AVADMILE--VCEIIR---AEQKINTVALSGGVFQNTLLMertLKILRDRHFNvyyNMSVPPN--DGSIGLG 745
Cdd:cd24100  165 AAVQRVLEevVVEWVKnalKKTGIKNLALAGGVFANVKLN---QRIAELPEVE---NLFVFPSmgDGGLALG 230
ASKHA_NBD_TsaD_bac cd24133
nucleotide-binding domain (NBD) of bacterial tRNA N6-adenosine threonylcarbamoyltransferase ...
666-737 1.17e-03

nucleotide-binding domain (NBD) of bacterial tRNA N6-adenosine threonylcarbamoyltransferase TsaD and similar proteins; TsaD (EC 2.3.1.234), also called N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD, or tRNA threonylcarbamoyladenosine biosynthesis protein TsaD, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction.


Pssm-ID: 466983  Cd Length: 328  Bit Score: 41.70  E-value: 1.17e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 316939615 666 QNKDDtgsLALGFHYAVADMILEVCEIIRAEQKINTVALSGGVFQNTLLMERTLKILRDRHFNVYYnmsvPP 737
Cdd:cd24133  230 QNKAD---IAASFQEAVVDVLVEKTLRAAKETGIKRLVVAGGVAANSRLREKLEEAAEKRGLEVYI----PP 294
PRK14422 PRK14422
acylphosphatase; Provisional
12-94 1.33e-03

acylphosphatase; Provisional


Pssm-ID: 237712  Cd Length: 93  Bit Score: 38.57  E-value: 1.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  12 RIT--VSGIVQGVGFRPFVHNIAKKHGIPGTVRNIG-GLVEIILQSSEEKYNEFLQDLKANAPVGSEITNIETEDIKERE 88
Cdd:PRK14422   7 RLTawVHGHVQGVGFRWWTRSRALELGLTGYAANLAdGRVQVVAEGPRAACEKLLQLLRGDDTPGRVDKVVEDWSEPRGQ 86

                 ....*.
gi 316939615  89 FDGFRI 94
Cdd:PRK14422  87 ITGFVE 92
PRK14438 PRK14438
acylphosphatase; Provisional
9-94 2.07e-03

acylphosphatase; Provisional


Pssm-ID: 172914  Cd Length: 91  Bit Score: 37.90  E-value: 2.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615   9 ITKRITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSEEKYnEFLQDLKANAPVGSEITNIETEDIKER 87
Cdd:PRK14438   3 IRAMVTVKGLVQGVAFRHHTQQTAQRLNVSGWVKNLpNGSVQGCFEGEETDV-AALIDWCHHGPSRARVSGVIVEREEFR 81

                 ....*...
gi 316939615  88 -EFDGFRI 94
Cdd:PRK14438  82 gEFDDFDI 89
ASKHA_NBD_Kae1_TsaD cd24031
nucleotide-binding domain (NBD) of the Kae1/TsaD family tRNA N6-adenosine ...
673-739 2.17e-03

nucleotide-binding domain (NBD) of the Kae1/TsaD family tRNA N6-adenosine threonylcarbamoyltransferase; tRNA N6-adenosine threonylcarbamoyltransferase (EC 2.3.1.234), also called N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein, or tRNA threonylcarbamoyladenosine biosynthesis protein, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. The family includes different orthologous of tRNA N6-adenosine threonylcarbamoyltransferase, such as bacterial kinase-associated endopeptidase 1 (Kae1) and TsaD (also known as YgjD) protein, mammalian O-sialoglycoprotein endopeptidase (OSGEP) and yeast protein Kae1, as well as mammalian OSGEP-like protein 1 (OSGEPL1) and yeast protein Qri7, which are the mitochondrial versions of the universal Kae1/TsaD (also known as YgjD) protein and essential for mitochondrial genome maintenance.


Pssm-ID: 466881  Cd Length: 304  Bit Score: 40.93  E-value: 2.17e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 316939615 673 SLALGFHYAVADMILEVCEIIRAEQKINTVALSGGVFQNTLLMERTLKILRDRHFNVYYnmsvPPND 739
Cdd:cd24031  223 DIAYSFQETVFDMLVEKTERALAHTNKKEVVLVGGVSANNRLREMLATMCEKRGGEFFY----PPPE 285
ASKHA_NBD_NodU_CmcH-like_N cd24033
N-terminal nucleotide-binding domain (NBD) of the NodU/CmcH family proteins; The NodU/CmcH ...
674-745 2.36e-03

N-terminal nucleotide-binding domain (NBD) of the NodU/CmcH family proteins; The NodU/CmcH family includes NodU from Rhizobium, CmcH from Amycolatopsis lactamdurans, the bifunctional carbamoyltransferase TobZ from Streptoalloteichus tenebrarius, NovN from Streptomyces niveus and NolNO from Sinorhizobium fredii. NodU is a Rhizobium nodulation protein involved in the synthesis of nodulation factors has 6-O-carbamoyltransferase-like activity. 3'-hydroxymethylcephem-O-carbamoyltransferase CmcH (EC 2.1.3.7), also called 3'-hydroxymethylcephem-O-CASE (CCT), is involved in cephamycin (antibiotic) biosynthesis and has 3-hydroxymethylcephem carbamoyltransferase activity. nebramycin 5' synthase TobZ (EC 6.1.2.2), also called kanamycin A carbamoyltransferase, or tobramycin carbamoyltransferase, functions as an ATP carbamoyltransferase and tobramycin carbamoyltransferase. Novobiocin biosynthesis protein NovN (EC 2.1.3.12), also called decarbamoylnovobiocin carbamoyltransferase, acts as a carbamoyltransferase that mediates 3'-carbamoylation of the noviosyl ring to produce novobiocin, the final step in the novobiocin biosynthesis pathway. Nodulation protein NolNO (EC 2.1.3.-), also called NolO or Y4hD, is involved in the O-carbamoylation of nod factors. Members in this family consist of two domains. The model corresponds to the N-terminal Kae1-like domain.


Pssm-ID: 466883 [Multi-domain]  Cd Length: 268  Bit Score: 40.36  E-value: 2.36e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 316939615 674 LALGFHYAVADMILEVCEIIRAEQKINTVALSGGVFQNTLLmerTLKILRDRHFnvyYNMSVPP--NDGSIGLG 745
Cdd:cd24033  193 LAATVQKVFEEALLELIKKLLERTGSDNLCLSGGCALNCVA---NSKLAEEGLF---KNVFVPPapGDSGLSLG 260
PRK14441 PRK14441
acylphosphatase; Provisional
12-49 2.93e-03

acylphosphatase; Provisional


Pssm-ID: 172917  Cd Length: 93  Bit Score: 37.65  E-value: 2.93e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 316939615  12 RITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNIG-GLVE 49
Cdd:PRK14441   8 RIVVSGRVQGVAFRQSAADEARRLGVEGWVRNLPdGRVE 46
PRK14444 PRK14444
acylphosphatase; Provisional
15-56 4.26e-03

acylphosphatase; Provisional


Pssm-ID: 172920  Cd Length: 92  Bit Score: 37.17  E-value: 4.26e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 316939615  15 VSGIVQGVGFRPFVHNIAKKHGIPGTVRNI-GGLVEIILQSSE 56
Cdd:PRK14444  10 ISGRVQGVNFRAYTRDRAREAGVKGWVRNLsDGRVEAVFEGSR 52
PRK14437 PRK14437
acylphosphatase; Provisional
13-94 4.83e-03

acylphosphatase; Provisional


Pssm-ID: 172913  Cd Length: 109  Bit Score: 37.40  E-value: 4.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316939615  13 ITVSGIVQGVGFRPFVHNIAKKHGIPGTVRNIG-GLVEIILqSSEEKYNEFLQDLKANAPVGSEITNIETEDIKEREFDG 91
Cdd:PRK14437  27 ATVSGKVQGVFFRESVRKKAEELQLTGWVKNLShGDVELVA-CGERDSIMILTEWLWEGPPQAAVSNVNWEEIVVEDYSD 105

                 ...
gi 316939615  92 FRI 94
Cdd:PRK14437 106 FRV 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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