|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-163 |
6.88e-42 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 142.27 E-value: 6.88e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 1 MFNNSSKILFMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMSDNNNFKSTEASLKYFLTQALASTVLLFAVILLML 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 81 KNNlnneINESFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIAPLMMISYLNLKNLLLISVILSVIV 160
Cdd:MTH00160 81 NLM----LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAII 156
|
...
gi 316892713 161 GAI 163
Cdd:MTH00160 157 GAI 159
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-163 |
1.50e-12 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 63.49 E-value: 1.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 24 SNSWLGAWMGLEINLLSFIPLMSDN-NNFKSTEASLKYFLTQALASTVLLFAVIL-------------LMLKNNLNNEIN 89
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISLmynytgtlsfdelSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 90 ESFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMN-ALLLMTWQKIA--------PLMMISYLNLKNLLLISVILSVIV 160
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGgyglirrsLLYLPSSPFIQQILLILAIISMLL 160
|
...
gi 316892713 161 GAI 163
Cdd:pfam00361 161 GSL 163
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
9-120 |
3.90e-07 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 48.57 E-value: 3.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 9 LFMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMS-DNNNFKSTEASLKYFLTQALASTVLLF--AVILLMLKNNLN 85
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgiSLLYGATGSLNL 185
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 316892713 86 NEINESFTSMIMLSTLLL------------KSGAAPFHFWFPNLMEG 120
Cdd:COG1007 186 AGIAAALAAGGANSPLLLlglvlvlaglafKLSAVPFHMWTPDVYEG 232
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
2-163 |
5.39e-07 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 48.02 E-value: 5.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 2 FNNSSKILFMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMS-DNNNFKSTEASLKYFLTQALASTVLLF------- 73
Cdd:TIGR01770 99 INKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliyg 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 74 -------AVILLMLKNNLNNEINESFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIA---PLMMIS- 142
Cdd:TIGR01770 179 ftgslnfEDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFl 258
|
170 180
....*....|....*....|....*..
gi 316892713 143 ------YLNLKNLLLISVILSVIVGAI 163
Cdd:TIGR01770 259 yilfgfSEAWQIFLAIIAFLSMLIGNF 285
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-163 |
6.88e-42 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 142.27 E-value: 6.88e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 1 MFNNSSKILFMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMSDNNNFKSTEASLKYFLTQALASTVLLFAVILLML 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 81 KNNlnneINESFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIAPLMMISYLNLKNLLLISVILSVIV 160
Cdd:MTH00160 81 NLM----LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAII 156
|
...
gi 316892713 161 GAI 163
Cdd:MTH00160 157 GAI 159
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
8-162 |
2.14e-33 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 120.34 E-value: 2.14e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 8 ILFMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMSDNNNFKSTEASLKYFLTQALASTVLLFAVILLMLKNN--LN 85
Cdd:MTH00105 7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGqwTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 86 NEINESFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIAPL----MMISYLNLkNLLLISVILSVIVG 161
Cdd:MTH00105 87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLsilyQISPSINP-NLLLTLAILSILIG 165
|
.
gi 316892713 162 A 162
Cdd:MTH00105 166 G 166
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
6-161 |
1.57e-32 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 118.00 E-value: 1.57e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 6 SKILFMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMSDNNNFKSTEASLKYFLTQALASTVLLFAVILLMLKNNL- 84
Cdd:MTH00112 5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQw 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 85 -NNEINESFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIAP---LMMISYLNLKNLLLISVILSVIV 160
Cdd:MTH00112 85 dITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPltlLLMTSNSLNPTLLLTLAILSTLI 164
|
.
gi 316892713 161 G 161
Cdd:MTH00112 165 G 165
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
3-163 |
9.78e-28 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 105.40 E-value: 9.78e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 3 NNSSKILFMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMSDNNNFKSTEASLKYFLTQALASTVLLFAVILLMLKN 82
Cdd:MTH00041 2 NRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 83 N--LNNEINESFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIAPLMMISYLN---LKNLLLISVILS 157
Cdd:MTH00041 82 GswSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISnllNSNILILCGILS 161
|
....*.
gi 316892713 158 VIVGAI 163
Cdd:MTH00041 162 VLVGGW 167
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
10-161 |
1.10e-27 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 105.39 E-value: 1.10e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 10 FMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMSDNNNFKSTEASLKYFLTQALASTVLLFAVILLMLKNNLNNEIN 89
Cdd:MTH00070 9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMN 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 316892713 90 -ESFTSMIMLST-LLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIAP---LMMISYLNLKNLLLISVILSVIVG 161
Cdd:MTH00070 89 mQTPLPTIMLTIaLMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPmalLIQISHLLNSNLLIIMGLLSTLIG 165
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
5-163 |
2.24e-27 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 104.20 E-value: 2.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 5 SSKILFMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMSDNNNFKSTEASLKYFLTQALASTVLLFAVILLMLKNnl 84
Cdd:MTH00144 4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLS-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 85 nneiNESFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIAPLMMISYLN----LKNLLLISVILSVIV 160
Cdd:MTH00144 82 ----FSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlywLAYLLCVISVLSALV 157
|
...
gi 316892713 161 GAI 163
Cdd:MTH00144 158 GSI 160
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
17-161 |
2.74e-26 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 101.42 E-value: 2.74e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 17 GTLITVTSNSWLGAWMGLEINLLSFIPLMSDNNNFKSTEASLKYFLTQALASTVLLFAVILLMLKN--NLNNEINESFTS 94
Cdd:MTH00135 16 GTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTgqWDIQQMSHPLPT 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 316892713 95 MIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIAPLMMISYLNLKN--LLLISVILSVIVG 161
Cdd:MTH00135 96 TMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNptLLITLGLTSTLVG 164
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
9-163 |
7.97e-24 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 94.85 E-value: 7.97e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 9 LFMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMSDNNNFKSTEASLKYFLTQALASTVLLFAVILLMLKNNLNNei 88
Cdd:MTH00011 10 LFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLK-- 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 316892713 89 neSFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIAPLMMISYL---NLKNLLLISVILSVIVGAI 163
Cdd:MTH00011 88 --NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtshNILPMMTSMAAMSALAGGL 163
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
9-163 |
4.35e-22 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 90.41 E-value: 4.35e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 9 LFMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMSDNNNFKSTEASLKYFLTQALASTVLLFAVILLMLKNNL--NN 86
Cdd:MTH00200 8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQwgIS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 87 EINESFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIAPLMM---ISYLNLKNLLLISVILSVIVGAI 163
Cdd:MTH00200 88 EMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALliqLAPALNSNILLLLGLLSVLVGGW 167
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-163 |
1.85e-20 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 85.49 E-value: 1.85e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 9 LFMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMSDNNNFKSTEASLKYFLTQALASTVLLFAVILLMLKNNLnnei 88
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYL---- 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 316892713 89 nESFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIAPLMMISYL-NLKNLLLISVILSVIVGAI 163
Cdd:MTH00197 78 -SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNsSSFMGLLICSVLSSLIGGI 152
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-163 |
1.29e-12 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 64.28 E-value: 1.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 13 MMITGTLITVTSNSWLGAWMGLEINLLS-FIPLMSDNNNFKSTEASLKYFLTQALASTVLLFAVI--------------- 76
Cdd:MTH00196 1 MVALGILCLISSSNWLSVYLAIELQTLSlFILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCAllcgttgglhlsyin 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 77 LLMLKNNLNNEINESFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIAPLMMISYLNLK-NLLLISVI 155
Cdd:MTH00196 81 LVLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNvNILLIGGL 160
|
....*...
gi 316892713 156 LSVIVGAI 163
Cdd:MTH00196 161 FSLFVGAI 168
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-163 |
1.50e-12 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 63.49 E-value: 1.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 24 SNSWLGAWMGLEINLLSFIPLMSDN-NNFKSTEASLKYFLTQALASTVLLFAVIL-------------LMLKNNLNNEIN 89
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISLmynytgtlsfdelSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 90 ESFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMN-ALLLMTWQKIA--------PLMMISYLNLKNLLLISVILSVIV 160
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGgyglirrsLLYLPSSPFIQQILLILAIISMLL 160
|
...
gi 316892713 161 GAI 163
Cdd:pfam00361 161 GSL 163
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
5-163 |
7.85e-12 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 61.96 E-value: 7.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 5 SSKILFMMMMITGTLITVTSNSWLGAWMGLEINLLS-FIPLMSDNNNFKSTEASLKYFLTQALASTVLLF--AVILLMLK 81
Cdd:MTH00199 97 QSSPILILIVALGSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFgcALLYGLTG 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 82 NNLNNEINESFTS-----MIMLStLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKI---APLMMISYLNlkNLLLIS 153
Cdd:MTH00199 177 ETSIQGINSILTGdvgkiLITIS-LLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIgvfSILVQIGPVT--NVVLIC 253
|
170
....*....|
gi 316892713 154 VILSVIVGAI 163
Cdd:MTH00199 254 AVLSIIYGAI 263
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
11-163 |
1.34e-08 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 52.52 E-value: 1.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 11 MMMMITGTLITVTSNSWLGAWMGLEI-NLLSFIPLMSDNNNFKSTEASLKYFLTQALASTVLL--------------FAV 75
Cdd:PRK05777 109 VLFALLGMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAG 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 76 ILLMLKNNLNNEINESFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIAPLMMI----------SYLN 145
Cdd:PRK05777 189 IAKALADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafggLSED 268
|
170
....*....|....*...
gi 316892713 146 LKNLLLISVILSVIVGAI 163
Cdd:PRK05777 269 WQQVLAIIAIASMLVGNL 286
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
9-120 |
3.90e-07 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 48.57 E-value: 3.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 9 LFMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMS-DNNNFKSTEASLKYFLTQALASTVLLF--AVILLMLKNNLN 85
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgiSLLYGATGSLNL 185
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 316892713 86 NEINESFTSMIMLSTLLL------------KSGAAPFHFWFPNLMEG 120
Cdd:COG1007 186 AGIAAALAAGGANSPLLLlglvlvlaglafKLSAVPFHMWTPDVYEG 232
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
2-163 |
5.39e-07 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 48.02 E-value: 5.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 2 FNNSSKILFMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMS-DNNNFKSTEASLKYFLTQALASTVLLF------- 73
Cdd:TIGR01770 99 INKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliyg 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 74 -------AVILLMLKNNLNNEINESFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIA---PLMMIS- 142
Cdd:TIGR01770 179 ftgslnfEDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFl 258
|
170 180
....*....|....*....|....*..
gi 316892713 143 ------YLNLKNLLLISVILSVIVGAI 163
Cdd:TIGR01770 259 yilfgfSEAWQIFLAIIAFLSMLIGNF 285
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
17-162 |
8.69e-05 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 41.77 E-value: 8.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 17 GTLITVTSNSWLGAWMGLEINLLSFIPLMSDNNNFKST---------EASLKYFLTQALASTVLLFA------------- 74
Cdd:MTH00198 200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGcalyfgftgnegm 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 75 --VILLMLKNNLNNEINE-SFTSMIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKIAPLMMISYLNLKNLLL 151
Cdd:MTH00198 280 lgTILSATLETTNIELRQgSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLL 359
|
170
....*....|..
gi 316892713 152 ISV-ILSVIVGA 162
Cdd:MTH00198 360 LSVaIISLVVGA 371
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
10-116 |
9.76e-03 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 35.51 E-value: 9.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316892713 10 FMMMMITGTLITVTSNSWLGAWMGLEINLLSFIPLMSDNNNFKSTEASLKYFLTQALASTVLLFAVILLMLKN------- 82
Cdd:COG0651 112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATgtlnmad 191
|
90 100 110
....*....|....*....|....*....|....*....
gi 316892713 83 --NLNNEINESFTSMI---MLSTLLLKSGAAPFHFWFPN 116
Cdd:COG0651 192 laARLAELDPGLLLAAfalLLVGFGIKAALFPLHFWLPD 230
|
|
|