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Conserved domains on  [gi|315475756|gb|ADU32359|]
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biotin/lipoate A/B protein ligase [Evansella cellulosilytica DSM 2522]

Protein Classification

biotin/lipoate A/B protein ligase family protein( domain architecture ID 10000572)

biotin/lipoate A/B protein ligase family protein is responsible for attaching biotin and lipoic acid to a specific lysine at the active site of biotin and lipoate-dependent enzymes, respectively

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
26-263 1.22e-57

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


:

Pssm-ID: 439865  Cd Length: 246  Bit Score: 184.67  E-value: 1.22e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756  26 NPIQSFAIDDTLCRRIGQEDDSGIARSWVHNNTVVLGIQDHRLPHIEtgIDFLKEAGYDVIVRNSGGLAVVLDEQVLNIS 105
Cdd:COG0095    9 DPAFNLALDEALLEEVAEGEDPPTLRLWRNPPTVVIGRFQNVLPEVN--LEYVEEHGIPVVRRISGGGAVYHDPGNLNYS 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756 106 LLF-QDNKEMSIDHGYELMVMLIRLLLGELGeevIDGEVKesycpGRYDLSIAGKKFAGISQRRIRGGVAVQIYIAVSGS 184
Cdd:COG0095   87 LILpEDDVPLSIEESYRKLLEPILEALRKLG---VDAEFS-----GRNDIVVDGRKISGNAQRRRKGAVLHHGTLLVDGD 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756 185 GSSRAALIKQFYDqavqgaptKFEYpKIIPT---KMTSLDELSTQPFSVQSLMHSLLITLSRLCDELRTYQLTDEDWNNY 261
Cdd:COG0095  159 LEKLAKVLRVPYE--------KLRD-KGIKSvrsRVTNLSELLGTDITREEVKEALLEAFAEVLGVLEPGELTDEELEAA 229

                 ..
gi 315475756 262 ED 263
Cdd:COG0095  230 EE 231
 
Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
26-263 1.22e-57

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


Pssm-ID: 439865  Cd Length: 246  Bit Score: 184.67  E-value: 1.22e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756  26 NPIQSFAIDDTLCRRIGQEDDSGIARSWVHNNTVVLGIQDHRLPHIEtgIDFLKEAGYDVIVRNSGGLAVVLDEQVLNIS 105
Cdd:COG0095    9 DPAFNLALDEALLEEVAEGEDPPTLRLWRNPPTVVIGRFQNVLPEVN--LEYVEEHGIPVVRRISGGGAVYHDPGNLNYS 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756 106 LLF-QDNKEMSIDHGYELMVMLIRLLLGELGeevIDGEVKesycpGRYDLSIAGKKFAGISQRRIRGGVAVQIYIAVSGS 184
Cdd:COG0095   87 LILpEDDVPLSIEESYRKLLEPILEALRKLG---VDAEFS-----GRNDIVVDGRKISGNAQRRRKGAVLHHGTLLVDGD 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756 185 GSSRAALIKQFYDqavqgaptKFEYpKIIPT---KMTSLDELSTQPFSVQSLMHSLLITLSRLCDELRTYQLTDEDWNNY 261
Cdd:COG0095  159 LEKLAKVLRVPYE--------KLRD-KGIKSvrsRVTNLSELLGTDITREEVKEALLEAFAEVLGVLEPGELTDEELEAA 229

                 ..
gi 315475756 262 ED 263
Cdd:COG0095  230 EE 231
LplA cd16443
lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide ...
13-241 7.54e-42

lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.


Pssm-ID: 319742  Cd Length: 209  Bit Score: 142.78  E-value: 7.54e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756  13 WFILDQSvvglGMNPIQSFAIDDTLCRRIGQEDDSgIARSWVHNNTVVLGIQDHRLPHIEtgIDFLKEAGYDVIVRNSGG 92
Cdd:cd16443    1 MRLIDSS----GDPPAENLALDEALLRSVAAPPTL-RLYLWQNPPTVVIGRFQNPLEEVN--LEYAEEDGIPVVRRPSGG 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756  93 LAVVLDEQVLNISLLFqDNKEMSIDHGYELMVMLIRLLLGELGeevIDGEVKEsycPGRYDLSIAGKKFAGISQRRIRGG 172
Cdd:cd16443   74 GAVFHDLGNLNYSLIL-PKEHPSIDESYRALSQPVIKALRKLG---VEAEFGG---VGRNDLVVGGKKISGSAQRRTKGR 146
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 315475756 173 VAVQIYIAVSGSGSSRAALIKQFYDQAVQGAptkfeyPKIIPTKMTSLDELSTQPFSVQSLMHSLLITL 241
Cdd:cd16443  147 ILHHGTLLVDVDLEKLARVLNVPYEKLKSKG------PKSVRSRVTNLSELLGRDITVEEVKNALLEAF 209
BPL_LplA_LipB pfam03099
Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, ...
75-184 5.06e-09

Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organizm probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LPLA) catalyzes the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes. The unusual biosynthesis pathway of lipoic acid is mechanistically intertwined with attachment of the cofactor.


Pssm-ID: 427135  Cd Length: 132  Bit Score: 53.60  E-value: 5.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756   75 IDFLKEAGYDVIVRNSGGL----AVVLD-EQVLNISLLF------QDNKEMSIdHGYELMVMLIR-LLLGELGEEVIDGE 142
Cdd:pfam03099  17 SSELESGGVVVVRRQTGGRgrggNVWHSpKGCLTYSLLLskehpnVDPSVLEF-YVLELVLAVLEaLGLYKPGISGIPCF 95
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 315475756  143 VKesycpGRYDLSIAGKKFAGISQRRIRGGVAVQIYIAVSGS 184
Cdd:pfam03099  96 VK-----WPNDLYVNGRKLAGILQRSTRGGTLHHGVIGLGVN 132
 
Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
26-263 1.22e-57

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


Pssm-ID: 439865  Cd Length: 246  Bit Score: 184.67  E-value: 1.22e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756  26 NPIQSFAIDDTLCRRIGQEDDSGIARSWVHNNTVVLGIQDHRLPHIEtgIDFLKEAGYDVIVRNSGGLAVVLDEQVLNIS 105
Cdd:COG0095    9 DPAFNLALDEALLEEVAEGEDPPTLRLWRNPPTVVIGRFQNVLPEVN--LEYVEEHGIPVVRRISGGGAVYHDPGNLNYS 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756 106 LLF-QDNKEMSIDHGYELMVMLIRLLLGELGeevIDGEVKesycpGRYDLSIAGKKFAGISQRRIRGGVAVQIYIAVSGS 184
Cdd:COG0095   87 LILpEDDVPLSIEESYRKLLEPILEALRKLG---VDAEFS-----GRNDIVVDGRKISGNAQRRRKGAVLHHGTLLVDGD 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756 185 GSSRAALIKQFYDqavqgaptKFEYpKIIPT---KMTSLDELSTQPFSVQSLMHSLLITLSRLCDELRTYQLTDEDWNNY 261
Cdd:COG0095  159 LEKLAKVLRVPYE--------KLRD-KGIKSvrsRVTNLSELLGTDITREEVKEALLEAFAEVLGVLEPGELTDEELEAA 229

                 ..
gi 315475756 262 ED 263
Cdd:COG0095  230 EE 231
LplA cd16443
lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide ...
13-241 7.54e-42

lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.


Pssm-ID: 319742  Cd Length: 209  Bit Score: 142.78  E-value: 7.54e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756  13 WFILDQSvvglGMNPIQSFAIDDTLCRRIGQEDDSgIARSWVHNNTVVLGIQDHRLPHIEtgIDFLKEAGYDVIVRNSGG 92
Cdd:cd16443    1 MRLIDSS----GDPPAENLALDEALLRSVAAPPTL-RLYLWQNPPTVVIGRFQNPLEEVN--LEYAEEDGIPVVRRPSGG 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756  93 LAVVLDEQVLNISLLFqDNKEMSIDHGYELMVMLIRLLLGELGeevIDGEVKEsycPGRYDLSIAGKKFAGISQRRIRGG 172
Cdd:cd16443   74 GAVFHDLGNLNYSLIL-PKEHPSIDESYRALSQPVIKALRKLG---VEAEFGG---VGRNDLVVGGKKISGSAQRRTKGR 146
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 315475756 173 VAVQIYIAVSGSGSSRAALIKQFYDQAVQGAptkfeyPKIIPTKMTSLDELSTQPFSVQSLMHSLLITL 241
Cdd:cd16443  147 ILHHGTLLVDVDLEKLARVLNVPYEKLKSKG------PKSVRSRVTNLSELLGRDITVEEVKNALLEAF 209
BPL_LplA_LipB cd16435
biotin-lipoate ligase family; This family includes biotin protein ligase (BPL), ...
53-196 4.16e-19

biotin-lipoate ligase family; This family includes biotin protein ligase (BPL), lipoate-protein ligase A (LplA) and octanoyl-[acyl carrier protein]-protein acyltransferase (LipB). Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LplA) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes.


Pssm-ID: 319740  Cd Length: 198  Bit Score: 82.97  E-value: 4.16e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756  53 WVHNNTVVLGIQDHRLPHIETgiDFLKEAGYDVIVRNSGGLAVVLDEQVLNISLLFQDNKEMSIDHGYELMVMLIRLLLG 132
Cdd:cd16435   35 WEHPTTVTLGRLDRELPHLEL--AKKIERGYELVVRNRGGRAVSHDPGQLVFSPVIGPNVEFMISKFNLIIEEGIRDAIA 112
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 315475756 133 ELGEEVidgEVKesycPGRYDLSIAGKKFAGISQRRIRGGVAVQIYIAVSGSGSSRAALIKQFY 196
Cdd:cd16435  113 DFGQSA---EVK----WGRNDLWIDNRKVCGIAVRVVKEAIFHGIALNLNQDLENFTEIIPCGY 169
BPL_LplA_LipB pfam03099
Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, ...
75-184 5.06e-09

Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organizm probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LPLA) catalyzes the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes. The unusual biosynthesis pathway of lipoic acid is mechanistically intertwined with attachment of the cofactor.


Pssm-ID: 427135  Cd Length: 132  Bit Score: 53.60  E-value: 5.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315475756   75 IDFLKEAGYDVIVRNSGGL----AVVLD-EQVLNISLLF------QDNKEMSIdHGYELMVMLIR-LLLGELGEEVIDGE 142
Cdd:pfam03099  17 SSELESGGVVVVRRQTGGRgrggNVWHSpKGCLTYSLLLskehpnVDPSVLEF-YVLELVLAVLEaLGLYKPGISGIPCF 95
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 315475756  143 VKesycpGRYDLSIAGKKFAGISQRRIRGGVAVQIYIAVSGS 184
Cdd:pfam03099  96 VK-----WPNDLYVNGRKLAGILQRSTRGGTLHHGVIGLGVN 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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