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OmpA/MotB domain protein [Paludibacter propionicigenes WB4]
OmpA family protein( domain architecture ID 11458388)
OmpA family membrane protein may act as a porin with low permeability that allows slow penetration of small solutes, similar to outer membrane protein A (OmpA) and outer membrane porin F (OprF) as well as the flagellar protein MotY which may act as a stator
List of domain hits
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Name | Accession | Description | Interval | E-value | ||||
OmpA_C-like | cd07185 | Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ... |
337-436 | 3.72e-20 | ||||
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane. : Pssm-ID: 143586 [Multi-domain] Cd Length: 106 Bit Score: 84.91 E-value: 3.72e-20
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OmpA | COG2885 | Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ... |
222-439 | 6.05e-20 | ||||
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis]; : Pssm-ID: 442131 [Multi-domain] Cd Length: 294 Bit Score: 89.84 E-value: 6.05e-20
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Name | Accession | Description | Interval | E-value | ||||
OmpA_C-like | cd07185 | Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ... |
337-436 | 3.72e-20 | ||||
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane. Pssm-ID: 143586 [Multi-domain] Cd Length: 106 Bit Score: 84.91 E-value: 3.72e-20
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OmpA | COG2885 | Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ... |
222-439 | 6.05e-20 | ||||
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442131 [Multi-domain] Cd Length: 294 Bit Score: 89.84 E-value: 6.05e-20
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OmpA | pfam00691 | OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ... |
340-418 | 3.98e-11 | ||||
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family. Pssm-ID: 425825 [Multi-domain] Cd Length: 95 Bit Score: 59.30 E-value: 3.98e-11
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Pal_lipo | TIGR02802 | peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ... |
337-403 | 4.98e-08 | ||||
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain. Pssm-ID: 274307 [Multi-domain] Cd Length: 104 Bit Score: 50.64 E-value: 4.98e-08
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PRK10802 | PRK10802 | peptidoglycan-associated lipoprotein Pal; |
338-431 | 7.62e-06 | ||||
peptidoglycan-associated lipoprotein Pal; Pssm-ID: 182744 [Multi-domain] Cd Length: 173 Bit Score: 46.02 E-value: 7.62e-06
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Name | Accession | Description | Interval | E-value | ||||
OmpA_C-like | cd07185 | Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ... |
337-436 | 3.72e-20 | ||||
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane. Pssm-ID: 143586 [Multi-domain] Cd Length: 106 Bit Score: 84.91 E-value: 3.72e-20
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OmpA | COG2885 | Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ... |
222-439 | 6.05e-20 | ||||
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442131 [Multi-domain] Cd Length: 294 Bit Score: 89.84 E-value: 6.05e-20
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OmpA | pfam00691 | OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ... |
340-418 | 3.98e-11 | ||||
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family. Pssm-ID: 425825 [Multi-domain] Cd Length: 95 Bit Score: 59.30 E-value: 3.98e-11
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Pal_lipo | TIGR02802 | peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ... |
337-403 | 4.98e-08 | ||||
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain. Pssm-ID: 274307 [Multi-domain] Cd Length: 104 Bit Score: 50.64 E-value: 4.98e-08
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PRK10802 | PRK10802 | peptidoglycan-associated lipoprotein Pal; |
338-431 | 7.62e-06 | ||||
peptidoglycan-associated lipoprotein Pal; Pssm-ID: 182744 [Multi-domain] Cd Length: 173 Bit Score: 46.02 E-value: 7.62e-06
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PRK10808 | PRK10808 | outer membrane protein A; Reviewed |
338-418 | 1.68e-05 | ||||
outer membrane protein A; Reviewed Pssm-ID: 236764 [Multi-domain] Cd Length: 351 Bit Score: 46.61 E-value: 1.68e-05
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PRK09967 | PRK09967 | OmpA family protein; |
337-418 | 7.28e-05 | ||||
OmpA family protein; Pssm-ID: 182172 [Multi-domain] Cd Length: 160 Bit Score: 43.04 E-value: 7.28e-05
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Blast search parameters | ||||
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