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Conserved domains on  [gi|307645671|gb|ADN83652|]
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ribosomal protein S5, partial [Himantopterus fuscinervis]

Protein Classification

40S ribosomal protein S5( domain architecture ID 10201903)

40S ribosomal protein S5

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 19-199 2.73e-136

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


:

Pssm-ID: 271246  Cd Length: 185  Bit Score: 378.43  E-value: 2.73e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  19 KLFGRWSCYDVQVSDMSLQDYISVKekYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAF 98
Cdd:cd14867    1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  99 EIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADEL 178
Cdd:cd14867   79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                        170       180
                 ....*....|....*....|.
gi 307645671 179 INAAKGSSNSYAIKKKDELER 199
Cdd:cd14867  159 INAAKGSSNSYAIKKKDELER 179
 
Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 19-199 2.73e-136

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 378.43  E-value: 2.73e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  19 KLFGRWSCYDVQVSDMSLQDYISVKekYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAF 98
Cdd:cd14867    1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  99 EIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADEL 178
Cdd:cd14867   79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                        170       180
                 ....*....|....*....|.
gi 307645671 179 INAAKGSSNSYAIKKKDELER 199
Cdd:cd14867  159 INAAKGSSNSYAIKKKDELER 179
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 17-199 1.06e-123

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 347.14  E-value: 1.06e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  17 EIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKH 96
Cdd:PTZ00091   5 EPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  97 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 176
Cdd:PTZ00091  85 AFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLAD 164

                        170       180
                 ....*....|....*....|...
gi 307645671 177 ELINAAKGSSNSYAIKKKDELER 199
Cdd:PTZ00091 165 EIINASKESSNSYAIKKKDEVER 187
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 17-199 5.08e-108

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 307.08  E-value: 5.08e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671   17 EIKLFGRWSCYDVQVSDMSLQDYISVKEKYakyLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKH 96
Cdd:TIGR01028   1 EIKVFGKWSTEEVEVKDPSLKDYINLEPIY---VPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671   97 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 176
Cdd:TIGR01028  78 AFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAE 157

                         170       180
                  ....*....|....*....|...
gi 307645671  177 ELINAAKGSSNSYAIKKKDELER 199
Cdd:TIGR01028 158 EIILAANGDSKSYAIKKKEELER 180
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 65-199 4.46e-57

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 176.03  E-value: 4.46e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671   65 AQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSP 144
Cdd:pfam00177   1 YNSPLVEKLINRLMRDG----KKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRP 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 307645671  145 LRRVNQAIWLLCTGAReaaFRNIKTIAECVADELINAAKGSsnSYAIKKKDELER 199
Cdd:pfam00177  77 ERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANGR--GAAVKKKEETHR 126
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 64-199 2.21e-17

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 75.10  E-value: 2.21e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  64 KAQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPR-E-DSTRIGraGTVRRQAVD 141
Cdd:COG0049   17 KYNSVLVTKFINKIMLDG----KKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLvEvKSRRVG--GATYQVPVE 90

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 307645671 142 VSPLRRVNQAI-WLLcTGAREaafRNIKTIAECVADELINAAKGSSNsyAIKKKDELER 199
Cdd:COG0049   91 VRPERRQALAMrWII-DAARK---RKEKTMAERLANELLDASNNRGA--AVKKREDTHK 143
 
Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 19-199 2.73e-136

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 378.43  E-value: 2.73e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  19 KLFGRWSCYDVQVSDMSLQDYISVKekYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAF 98
Cdd:cd14867    1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  99 EIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADEL 178
Cdd:cd14867   79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                        170       180
                 ....*....|....*....|.
gi 307645671 179 INAAKGSSNSYAIKKKDELER 199
Cdd:cd14867  159 INAAKGSSNSYAIKKKDELER 179
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 17-199 1.06e-123

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 347.14  E-value: 1.06e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  17 EIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKH 96
Cdd:PTZ00091   5 EPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  97 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 176
Cdd:PTZ00091  85 AFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLAD 164

                        170       180
                 ....*....|....*....|...
gi 307645671 177 ELINAAKGSSNSYAIKKKDELER 199
Cdd:PTZ00091 165 EIINASKESSNSYAIKKKDEVER 187
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 17-199 5.08e-108

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 307.08  E-value: 5.08e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671   17 EIKLFGRWSCYDVQVSDMSLQDYISVKEKYakyLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKH 96
Cdd:TIGR01028   1 EIKVFGKWSTEEVEVKDPSLKDYINLEPIY---VPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671   97 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 176
Cdd:TIGR01028  78 AFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAE 157

                         170       180
                  ....*....|....*....|...
gi 307645671  177 ELINAAKGSSNSYAIKKKDELER 199
Cdd:TIGR01028 158 EIILAANGDSKSYAIKKKEELER 180
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 13-199 2.20e-92

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 267.92  E-value: 2.20e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  13 ADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYakyLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 92
Cdd:PRK04027   6 AEPMEIKLFGKWDVEEVEVRDPSLKRYINLTPVL---VPHTGGRHAKKQFGKAEVPIVERLINKLMRTERNTGKKQKAYN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  93 IVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAE 172
Cdd:PRK04027  83 IVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASFKNKKSIEE 162

                        170       180
                 ....*....|....*....|....*..
gi 307645671 173 CVADELINAAKGSSNSYAIKKKDELER 199
Cdd:PRK04027 163 ALAEEIIAAANNDPKSYAVRKKEEIER 189
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 65-199 4.46e-57

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 176.03  E-value: 4.46e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671   65 AQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSP 144
Cdd:pfam00177   1 YNSPLVEKLINRLMRDG----KKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRP 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 307645671  145 LRRVNQAIWLLCTGAReaaFRNIKTIAECVADELINAAKGSsnSYAIKKKDELER 199
Cdd:pfam00177  77 ERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANGR--GAAVKKKEETHR 126
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 64-199 2.57e-22

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 87.50  E-value: 2.57e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  64 KAQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRED--STRIGraGTVRRQAVD 141
Cdd:cd14869    6 KYNSVLVSKFINKLMKDG----KKSVAEKIVYDALEIIKKKTGKDPLEVFEKALENVKPLVEvrSRRVG--GATYQVPVE 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 307645671 142 VSPLRRVNQAI-WLLcTGAREaafRNIKTIAECVADELINAAKGSSNsyAIKKKDELER 199
Cdd:cd14869   80 VRPERRQSLALrWII-EAARK---RKEKSMAEKLAAELLDAANNTGA--AVKKKEDTHK 132
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 64-199 2.21e-17

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 75.10  E-value: 2.21e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  64 KAQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPR-E-DSTRIGraGTVRRQAVD 141
Cdd:COG0049   17 KYNSVLVTKFINKIMLDG----KKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLvEvKSRRVG--GATYQVPVE 90

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 307645671 142 VSPLRRVNQAI-WLLcTGAREaafRNIKTIAECVADELINAAKGSSNsyAIKKKDELER 199
Cdd:COG0049   91 VRPERRQALAMrWII-DAARK---RKEKTMAERLANELLDASNNRGA--AVKKREDTHK 143
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 69-199 9.37e-17

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 73.60  E-value: 9.37e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  69 IVERLTNSLMMHGrnngKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRED--STRIGraGTVRRQAVDVSPLR 146
Cdd:PRK05302  22 LVTKFINKLMLDG----KKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEvkSRRVG--GATYQVPVEVRPER 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 307645671 147 RVNQAI-WLLcTGAREaafRNIKTIAECVADELINAAKGssNSYAIKKKDELER 199
Cdd:PRK05302  96 RQALAMrWLV-EAARK---RGEKTMAERLANELLDAANN--RGAAVKKREDTHR 143
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 72-199 2.37e-15

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 69.61  E-value: 2.37e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  72 RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRED--STRIGraGTVRRQAVDVSPLRRVN 149
Cdd:cd14871   13 RLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEvkARRVG--GSTYQVPVEVRSERGTA 90

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 307645671 150 QAI-WLLcTGAREaafRNIKTIAECVADELINAAKGSSNsyAIKKKDELER 199
Cdd:cd14871   91 LAIrWLL-KASRK---RSGRSMASKLANEIIDAAKNTGN--AIRKKEETHR 135
rps7 CHL00053
ribosomal protein S7
 72-199 2.10e-14

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 67.22  E-value: 2.10e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  72 RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRED--STRIGraGTVRRQAVDVSPLRRVN 149
Cdd:CHL00053  21 RLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEvkARRVG--GSTYQVPIEIGSTRGKA 98

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 307645671 150 QAI-WLLcTGAREAAFRNiktIAECVADELINAAKGSSNsyAIKKKDELER 199
Cdd:CHL00053  99 LAIrWLL-KASRKRSGRN---MAFKLSSELVDAAKGSGN--AIRKKEETHR 143
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 68-199 1.51e-13

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 64.90  E-value: 1.51e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645671  68 PIVERLTNSLMMHGrnngKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP--REDSTRigRAGTVRRQAVdvsPL 145
Cdd:cd14868   23 PLLEQLTNLIMKHG----KKAKAQRIVSRALLHIHTLTRADPLPLLRQAIDSAAPlvKIKSQK--KGAKNVQVPV---PL 93

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 307645671 146 R---RVNQAI-WLLctgarEAA-FRNIKTIAECVADELINAAKGSSNsyAIKKKDELER 199
Cdd:cd14868   94 NerqRRRKAIkWIL-----EASdKRPGKSFSERLAEEIIAVVEGTSS--ALEKKEQVHK 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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