unknown, partial [Lycium chilense]
List of domain hits
Name | Accession | Description | Interval | E-value | ||
AAT_I super family | cl18945 | Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP) ... |
1-39 | 2.94e-12 | ||
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). The actual alignment was detected with superfamily member PRK07550: Pssm-ID: 450240 [Multi-domain] Cd Length: 386 Bit Score: 57.66 E-value: 2.94e-12
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Name | Accession | Description | Interval | E-value | ||
PRK07550 | PRK07550 | aminotransferase; |
1-39 | 2.94e-12 | ||
aminotransferase; Pssm-ID: 181026 [Multi-domain] Cd Length: 386 Bit Score: 57.66 E-value: 2.94e-12
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AAT_like | cd00609 | Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
1-39 | 1.21e-07 | ||
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Pssm-ID: 99734 [Multi-domain] Cd Length: 350 Bit Score: 44.64 E-value: 1.21e-07
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AspB | COG0436 | Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]; ... |
1-38 | 2.54e-07 | ||
Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]; Aspartate/methionine/tyrosine aminotransferase is part of the Pathway/BioSystem: Isoleucine, leucine, valine biosynthesis Pssm-ID: 440205 [Multi-domain] Cd Length: 387 Bit Score: 43.58 E-value: 2.54e-07
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Name | Accession | Description | Interval | E-value | ||
PRK07550 | PRK07550 | aminotransferase; |
1-39 | 2.94e-12 | ||
aminotransferase; Pssm-ID: 181026 [Multi-domain] Cd Length: 386 Bit Score: 57.66 E-value: 2.94e-12
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PRK05957 | PRK05957 | pyridoxal phosphate-dependent aminotransferase; |
1-38 | 7.24e-11 | ||
pyridoxal phosphate-dependent aminotransferase; Pssm-ID: 235654 Cd Length: 389 Bit Score: 53.92 E-value: 7.24e-11
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AAT_like | cd00609 | Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
1-39 | 1.21e-07 | ||
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Pssm-ID: 99734 [Multi-domain] Cd Length: 350 Bit Score: 44.64 E-value: 1.21e-07
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AspB | COG0436 | Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]; ... |
1-38 | 2.54e-07 | ||
Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]; Aspartate/methionine/tyrosine aminotransferase is part of the Pathway/BioSystem: Isoleucine, leucine, valine biosynthesis Pssm-ID: 440205 [Multi-domain] Cd Length: 387 Bit Score: 43.58 E-value: 2.54e-07
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PRK05764 | PRK05764 | aspartate aminotransferase; Provisional |
1-27 | 1.69e-05 | ||
aspartate aminotransferase; Provisional Pssm-ID: 235596 Cd Length: 393 Bit Score: 38.57 E-value: 1.69e-05
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PRK07568 | PRK07568 | pyridoxal phosphate-dependent aminotransferase; |
1-39 | 1.39e-04 | ||
pyridoxal phosphate-dependent aminotransferase; Pssm-ID: 181036 Cd Length: 397 Bit Score: 35.98 E-value: 1.39e-04
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PLN00175 | PLN00175 | aminotransferase family protein; Provisional |
1-38 | 3.70e-03 | ||
aminotransferase family protein; Provisional Pssm-ID: 215089 [Multi-domain] Cd Length: 413 Bit Score: 32.14 E-value: 3.70e-03
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Blast search parameters | ||||
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