NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|269924981|gb|ACZ52804|]
View 

ribosomal protein S14, partial (plastid) [Volvox carteri f. nagariensis]

Protein Classification

uS14 family ribosomal protein( domain architecture ID 2116)

uS14 family ribosomal protein such as bacterial 30S ribosomal protein S14, and eukaryotic 40S ribosomal protein S29

Gene Ontology:  GO:0003735

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
rpsN super family cl00355
30S ribosomal protein S14; Reviewed
 1-44 2.22e-16

30S ribosomal protein S14; Reviewed


The actual alignment was detected with superfamily member CHL00074:

Pssm-ID: 469739  Cd Length: 100  Bit Score: 65.60  E-value: 2.22e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 269924981   1 MAKKSMIQRELKRQKLVMKYATKRAALKEQIKHTTFLKEKLSLH 44
Cdd:CHL00074   1 MAKKSLIQREKKRQKLVQKYHLKRRSLKKEIKKVSSLSEKWEIH 44
 
Name Accession Description Interval E-value
rps14 CHL00074
ribosomal protein S14
 1-44 2.22e-16

ribosomal protein S14


Pssm-ID: 214354  Cd Length: 100  Bit Score: 65.60  E-value: 2.22e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 269924981   1 MAKKSMIQRELKRQKLVMKYATKRAALKEQIKHTTFLKEKLSLH 44
Cdd:CHL00074   1 MAKKSLIQREKKRQKLVQKYHLKRRSLKKEIKKVSSLSEKWEIH 44
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 1-17 1.92e-03

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 31.52  E-value: 1.92e-03
                        10
                ....*....|....*..
gi 269924981  1 MAKKSMIQRELKRQKLV 17
Cdd:COG0199   1 MAKKSMIARNKKRPKPV 17
 
Name Accession Description Interval E-value
rps14 CHL00074
ribosomal protein S14
 1-44 2.22e-16

ribosomal protein S14


Pssm-ID: 214354  Cd Length: 100  Bit Score: 65.60  E-value: 2.22e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 269924981   1 MAKKSMIQRELKRQKLVMKYATKRAALKEQIKHTTFLKEKLSLH 44
Cdd:CHL00074   1 MAKKSLIQREKKRQKLVQKYHLKRRSLKKEIKKVSSLSEKWEIH 44
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 1-17 1.92e-03

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 31.52  E-value: 1.92e-03
                        10
                ....*....|....*..
gi 269924981  1 MAKKSMIQRELKRQKLV 17
Cdd:COG0199   1 MAKKSMIARNKKRPKPV 17
rpsN PRK06911
30S ribosomal protein S14; Reviewed
 1-34 7.14e-03

30S ribosomal protein S14; Reviewed


Pssm-ID: 180742 [Multi-domain]  Cd Length: 100  Bit Score: 31.19  E-value: 7.14e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 269924981   1 MAKKSMIQRELKRQKLVMKYATKRAALKEQIKHT 34
Cdd:PRK06911   1 MAKKSMLMRESKRAKLVEKYRQRRNELKQLIKSS 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH