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Conserved domains on  [gi|258676920|gb|ACV87313|]
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McyA, partial [Anabaena sp. A7]

Protein Classification

condensation domain-containing protein( domain architecture ID 1562932)

condensation (C) domain-containing protein catalyzes peptide bond formation; the C domain is found in non-ribosomal peptide synthetases (NRPSs), modular multidomain enzymes that catalyze the biosynthesis of diverse peptides with a wide variety of activities

CATH:  3.30.559.30
Gene Ontology:  GO:0019184|GO:1904091
PubMed:  9712910|17506888

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
C_NRPS-like super family cl40425
Condensation domain of nonribosomal peptide synthetases (NRPSs); Condensation (C) domains of ...
1-99 9.49e-37

Condensation domain of nonribosomal peptide synthetases (NRPSs); Condensation (C) domains of nonribosomal peptide synthetases (NRPSs) catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long, with various activities such as antibiotic, antifungal, antitumor and immunosuppression. There are various subtypes of C-domains such as the LCL-type which catalyzes peptide bond formation between two L-amino acids, the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity.


The actual alignment was detected with superfamily member cd19536:

Pssm-ID: 394795 [Multi-domain]  Cd Length: 419  Bit Score: 127.95  E-value: 9.49e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920   1 KSVLLAAHFRVLSLLNNQRDIVTGLVSNGRLE-VADGEKILGLFLNTLPLRLELCGGSWSDLVKQ-QDVERECLSWRRYP 78
Cdd:cd19536  242 STLLLAAWALVLSRHSGSDDVVFGTVVHGRSEeTTGAERLLGLFLNTLPLRVTLSEETVEDLLKRaQEQELESLSHEQVP 321
                         90       100
                 ....*....|....*....|.
gi 258676920  79 LAELQKTFAGQPLeFDTAFNF 99
Cdd:cd19536  322 LADIQRCSEGEPL-FDSIVNF 341
 
Name Accession Description Interval E-value
DCL_NRPS-like cd19536
DCL-type Condensation domains of nonribosomal peptide synthetases (NRPSs), such as terminal ...
1-99 9.49e-37

DCL-type Condensation domains of nonribosomal peptide synthetases (NRPSs), such as terminal fungal CT domains and Dual Epimerization/Condensation (E/C) domains; Condensation (C) domains of nonribosomal peptide synthetases (NRPSs) catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). There are various subtypes of C-domains such as the LCL-type which catalyzes peptide bond formation between two L-amino acids, the DCL-type [D-specific for the peptidyl donor and L-specific for the aminoacyl acceptor ((D)C(L))], which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity.


Pssm-ID: 380459 [Multi-domain]  Cd Length: 419  Bit Score: 127.95  E-value: 9.49e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920   1 KSVLLAAHFRVLSLLNNQRDIVTGLVSNGRLE-VADGEKILGLFLNTLPLRLELCGGSWSDLVKQ-QDVERECLSWRRYP 78
Cdd:cd19536  242 STLLLAAWALVLSRHSGSDDVVFGTVVHGRSEeTTGAERLLGLFLNTLPLRVTLSEETVEDLLKRaQEQELESLSHEQVP 321
                         90       100
                 ....*....|....*....|.
gi 258676920  79 LAELQKTFAGQPLeFDTAFNF 99
Cdd:cd19536  322 LADIQRCSEGEPL-FDSIVNF 341
EntF COG1020
EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase [Secondary metabolites ...
2-99 3.22e-17

EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440643 [Multi-domain]  Cd Length: 1329  Bit Score: 74.89  E-value: 3.22e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920    2 SVLLAAHFRVLSLLNNQRDIVTGLVSNGRLEvADGEKILGLFLNTLPLRLELCGG-SWSDLVKQ-QDVERECLSWRRYPL 79
Cdd:COG1020   266 MVLLAAFALLLARYSGQDDVVVGTPVAGRPR-PELEGLVGFFVNTLPLRVDLSGDpSFAELLARvRETLLAAYAHQDLPF 344
                          90       100
                  ....*....|....*....|....*.
gi 258676920   80 AELQ------KTFAGQPLeFDTAFNF 99
Cdd:COG1020   345 ERLVeelqpeRDLSRNPL-FQVMFVL 369
Condensation pfam00668
Condensation domain; This domain is found in many multi-domain enzymes which synthesize ...
2-99 4.34e-14

Condensation domain; This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyzes a condensation reaction to form peptide bonds in non- ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pfam00550). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site.


Pssm-ID: 395541 [Multi-domain]  Cd Length: 454  Bit Score: 65.82  E-value: 4.34e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920    2 SVLLAAHFRVLSLLNNQRDIVTGLVSNGRLEvADGEKILGLFLNTLPLRLELCGG-SWSDLVKQ-QDVERECLSWRRYPL 79
Cdd:pfam00668 253 DVLLAAYGLLLSRYTGQDDIVVGTPGSGRPS-PDIERMVGMFVNTLPLRIDPKGGkTFSELIKRvQEDLLSAEPHQGYPF 331
                          90       100
                  ....*....|....*....|....*.
gi 258676920   80 AELQ------KTFAGQPLeFDTAFNF 99
Cdd:pfam00668 332 GDLVndlrlpRDLSRHPL-FDPMFSF 356
PRK12316 PRK12316
peptide synthase; Provisional
2-99 1.41e-05

peptide synthase; Provisional


Pssm-ID: 237054 [Multi-domain]  Cd Length: 5163  Bit Score: 41.87  E-value: 1.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920    2 SVLLAAHFRVLSLLNNQRDIVTGLVSNGR-LEVADGEKILGLFLNTLPL----RLELCGGSWsdlvkQQDVERECLSWRR 76
Cdd:PRK12316 4341 TLVQAAWLLLLQRYTGQDTVAFGATVAGRpAELPGIEGQIGLFINTLPViatpRAQQSVVEW-----LQQVQRQNLALRE 4415
                          90       100
                  ....*....|....*....|....*...
gi 258676920   77 Y---PLAELQKtFAGQPLE--FDTAFNF 99
Cdd:PRK12316 4416 HehtPLYEIQR-WAGQGGEalFDSLLVF 4442
 
Name Accession Description Interval E-value
DCL_NRPS-like cd19536
DCL-type Condensation domains of nonribosomal peptide synthetases (NRPSs), such as terminal ...
1-99 9.49e-37

DCL-type Condensation domains of nonribosomal peptide synthetases (NRPSs), such as terminal fungal CT domains and Dual Epimerization/Condensation (E/C) domains; Condensation (C) domains of nonribosomal peptide synthetases (NRPSs) catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). There are various subtypes of C-domains such as the LCL-type which catalyzes peptide bond formation between two L-amino acids, the DCL-type [D-specific for the peptidyl donor and L-specific for the aminoacyl acceptor ((D)C(L))], which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity.


Pssm-ID: 380459 [Multi-domain]  Cd Length: 419  Bit Score: 127.95  E-value: 9.49e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920   1 KSVLLAAHFRVLSLLNNQRDIVTGLVSNGRLE-VADGEKILGLFLNTLPLRLELCGGSWSDLVKQ-QDVERECLSWRRYP 78
Cdd:cd19536  242 STLLLAAWALVLSRHSGSDDVVFGTVVHGRSEeTTGAERLLGLFLNTLPLRVTLSEETVEDLLKRaQEQELESLSHEQVP 321
                         90       100
                 ....*....|....*....|.
gi 258676920  79 LAELQKTFAGQPLeFDTAFNF 99
Cdd:cd19536  322 LADIQRCSEGEPL-FDSIVNF 341
EntF COG1020
EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase [Secondary metabolites ...
2-99 3.22e-17

EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440643 [Multi-domain]  Cd Length: 1329  Bit Score: 74.89  E-value: 3.22e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920    2 SVLLAAHFRVLSLLNNQRDIVTGLVSNGRLEvADGEKILGLFLNTLPLRLELCGG-SWSDLVKQ-QDVERECLSWRRYPL 79
Cdd:COG1020   266 MVLLAAFALLLARYSGQDDVVVGTPVAGRPR-PELEGLVGFFVNTLPLRVDLSGDpSFAELLARvRETLLAAYAHQDLPF 344
                          90       100
                  ....*....|....*....|....*.
gi 258676920   80 AELQ------KTFAGQPLeFDTAFNF 99
Cdd:COG1020   345 ERLVeelqpeRDLSRNPL-FQVMFVL 369
Condensation pfam00668
Condensation domain; This domain is found in many multi-domain enzymes which synthesize ...
2-99 4.34e-14

Condensation domain; This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyzes a condensation reaction to form peptide bonds in non- ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pfam00550). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site.


Pssm-ID: 395541 [Multi-domain]  Cd Length: 454  Bit Score: 65.82  E-value: 4.34e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920    2 SVLLAAHFRVLSLLNNQRDIVTGLVSNGRLEvADGEKILGLFLNTLPLRLELCGG-SWSDLVKQ-QDVERECLSWRRYPL 79
Cdd:pfam00668 253 DVLLAAYGLLLSRYTGQDDIVVGTPGSGRPS-PDIERMVGMFVNTLPLRIDPKGGkTFSELIKRvQEDLLSAEPHQGYPF 331
                          90       100
                  ....*....|....*....|....*.
gi 258676920   80 AELQ------KTFAGQPLeFDTAFNF 99
Cdd:pfam00668 332 GDLVndlrlpRDLSRHPL-FDPMFSF 356
DCL_NRPS cd19543
DCL-type Condensation domain of nonribosomal peptide synthetases (NRPSs), which catalyzes the ...
11-99 1.19e-12

DCL-type Condensation domain of nonribosomal peptide synthetases (NRPSs), which catalyzes the condensation between a D-aminoacyl/peptidyl-PCP donor and a L-aminoacyl-PCP acceptor; The DCL-type Condensation (C) domain catalyzes the condensation between a D-aminoacyl/peptidyl-PCP donor and a L-aminoacyl-PCP acceptor. This domain is D-specific for the peptidyl donor and L-specific for the aminoacyl acceptor ((D)C(L)); this is in contrast with the standard LCL domains which catalyze peptide bond formation between two L-amino acids, and the restriction of ribosomes to use only L-amino acids. C domains of nonribosomal peptide synthetases (NRPSs) catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). There are various subtypes of C-domains in addition to the LCL- and DCL-types such as starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity.


Pssm-ID: 380465 [Multi-domain]  Cd Length: 423  Bit Score: 61.84  E-value: 1.19e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920  11 VLSLLNNQRDIVTGLVSNGR-LEVADGEKILGLFLNTLPLRLELCGG-SWSDLVKqqDVERECLSWRRY---PLAELQK- 84
Cdd:cd19543  255 LLSRYSGRDDVVFGTTVSGRpAELPGIETMVGLFINTLPVRVRLDPDqTVLELLK--DLQAQQLELREHeyvPLYEIQAw 332
                         90
                 ....*....|....*
gi 258676920  85 TFAGQPLeFDTAFNF 99
Cdd:cd19543  333 SEGKQAL-FDHLLVF 346
E-C_NRPS cd19544
Dual Epimerization/Condensation (E/C) domains of nonribosomal peptide synthetases (NRPSs); ...
10-64 9.89e-10

Dual Epimerization/Condensation (E/C) domains of nonribosomal peptide synthetases (NRPSs); Dual function Epimerization/Condensation (E/C) domains have both an epimerization and a DCL condensation activity. Dual E/C domains first epimerize the substrate amino acid to produce a D-configuration, then catalyze the condensation between the D-aminoacyl/peptidyl-PCP donor and a L-aminoacyl-PCP acceptor. They are D-specific for the peptidyl donor and L-specific for the aminoacyl acceptor ((D)C(L)); this is in contrast with the standard LCL domains which catalyze peptide bond formation between two L-amino acids, and the restriction of ribosomes to use only L-amino acids. These Dual E/C domains contain an extended His-motif (HHx(N)GD) near the N-terminus of the domain in addition to the standard Condensation (C) domain active site motif (HHxxxD). C domains of nonribosomal peptide synthetases (NRPSs) catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). There are various subtypes of C-domains, these include the DCL-type, LCL-type, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C domains, and the X-domain.


Pssm-ID: 380466 [Multi-domain]  Cd Length: 413  Bit Score: 53.60  E-value: 9.89e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 258676920  10 RVLSLLNNQRDIVTGLVSNGRLEVADG-EKILGLFLNTLPLRLELCGGSWSDLVKQ 64
Cdd:cd19544  248 LVLARCSGRDDVVFGTVLSGRMQGGAGaDRALGMFINTLPLRVRLGGRSVREAVRQ 303
CT_NRPS-like cd19542
Terminal Condensation (CT)-like domains of nonribosomal peptide synthetases (NRPSs); Unlike ...
2-99 3.97e-09

Terminal Condensation (CT)-like domains of nonribosomal peptide synthetases (NRPSs); Unlike bacterial NRPS, which typically have specialized terminal thioesterase (TE) domains to cyclize peptide products, many fungal NRPSs employ a terminal condensation-like (CT) domain to produce macrocyclic peptidyl products (e.g. cyclosporine and echinocandin). Domains in this subfamily (which includes both terminal and non-terminal domains) typically have a non-canonical conserved [SN]HxxxDx(14)Y motif at their active site compared to the standard Condensation (C) domain active site motif (HHxxxD). C-domains of NRPSs catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). There are various subtypes of C-domains such as the LCL-type which catalyzes peptide bond formation between two L-amino acids, the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain.


Pssm-ID: 380464 [Multi-domain]  Cd Length: 401  Bit Score: 51.92  E-value: 3.97e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920   2 SVLLAAHFRVLSLLNNQRDIVTGLVSNGR-LEVADGEKILGLFLNTLPLRLELCgGSWS--DLVK--QQDVEReCLSWRR 76
Cdd:cd19542  224 SLFQAAWALVLARYTGSRDVVFGYVVSGRdLPVPGIDDIVGPCINTLPVRVKLD-PDWTvlDLLRqlQQQYLR-SLPHQH 301
                         90       100
                 ....*....|....*....|....*
gi 258676920  77 YPLAELQK--TFAGQPLEFDTAFNF 99
Cdd:cd19542  302 LSLREIQRalGLWPSGTLFNTLVSY 326
SgcC5_NRPS-like cd19539
SgcC5 is a non-ribosomal peptide synthetase (NRPS) condensation enzyme with ester- and amide- ...
2-99 1.29e-08

SgcC5 is a non-ribosomal peptide synthetase (NRPS) condensation enzyme with ester- and amide- bond forming activity and similar C-domains of modular NRPSs; SgcC5 is a free-standing NRPS condensation enzyme (rather than a modular NRPS), which catalyzes the condensation between the SgcC2-tethered (S)-3-chloro-5-hydroxy-beta-tyrosine and (R)-1phenyl-1,2-ethanediol, forming an ester bond, during the synthesis of the chromoprotein enediyne antitumor antibiotic C-1027. It has some acceptor substrate promiscuity as it has been shown to also catalyze the formation of an amide bond between SgcC2-tethered (S)-3-chloro-5-hydroxy-beta-tyrosine and a mimic of the enediyne core acceptor substrate having an amine at its C-2 position. This subfamily also includes similar C-domains of modular NRPSs such as Penicillium chrysogenum N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase PCBAB. Condensation (C) domains of NRPSs normally catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). There are various subtypes of C-domains such as the LCL-type which catalyzes peptide bond formation between two L-amino acids, the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity.


Pssm-ID: 380462 [Multi-domain]  Cd Length: 427  Bit Score: 50.46  E-value: 1.29e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920   2 SVLLAAHFRVLSLLNNQRDIVTGLVSNGRLEvADGEKILGLFLNTLPLRLELC-GGSWSDLVKQqdVERECLSWRRY--- 77
Cdd:cd19539  249 MVLLAAYCVLLRRYTGQTDIVVGTPVAGRNH-PRFESTVGFFVNLLPLRVDVSdCATFRDLIAR--VRKALVDAQRHqel 325
                         90       100
                 ....*....|....*....|....*..
gi 258676920  78 PLAELQKTF-----AGQPLEFDTAFNF 99
Cdd:cd19539  326 PFQQLVAELpvdrdAGRHPLVQIVFQV 352
C_NRPS-like cd19066
Condensation domain of nonribosomal peptide synthetases (NRPSs); Condensation (C) domains of ...
3-99 4.46e-07

Condensation domain of nonribosomal peptide synthetases (NRPSs); Condensation (C) domains of nonribosomal peptide synthetases (NRPSs) catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long, with various activities such as antibiotic, antifungal, antitumor and immunosuppression. There are various subtypes of C-domains such as the LCL-type which catalyzes peptide bond formation between two L-amino acids, the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity.


Pssm-ID: 380453 [Multi-domain]  Cd Length: 427  Bit Score: 45.86  E-value: 4.46e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920   3 VLLAAHFRVLSLLNNQRDIVTGLVSNGRLEVADgEKILGLFLNTLPLRLELCGG-SWSDLVKQ-QDVERECLSWRRYPLA 80
Cdd:cd19066  249 LLLAAFALALKRLTASIDVVIGLTFLNRPDEAV-EDTIGLFLNLLPLRIDTSPDaTFPELLKRtKEQSREAIEHQRVPFI 327
                         90       100
                 ....*....|....*....|....
gi 258676920  81 ELQKTF-----AGQPLEFDTAFNF 99
Cdd:cd19066  328 ELVRHLgvvpeAPKHPLFEPVFTF 351
C_PKS-NRPS cd19532
Condensation domain of hybrid polyketide synthetase/nonribosomal peptide synthetases (PKS ...
5-64 3.12e-06

Condensation domain of hybrid polyketide synthetase/nonribosomal peptide synthetases (PKS/NRPSs); Condensation (C) domains of nonribosomal peptide synthetases (NRPSs) catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. Hybrid PKS/NRPS create polymers containing both polyketide and amide linkages. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity. Most members of this subfamily have the typical C-domain HHxxxD motif, a few such as Monascus pilosus lovastatin nonaketide synthase MokA have a non-canonical HRxxxD motif in the C-domain and are unable to catalyze amide-bond formation. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). There are various subtypes of C-domains such as the LCL-type which catalyzes peptide bond formation between two L-amino acids, the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain.


Pssm-ID: 380455 [Multi-domain]  Cd Length: 421  Bit Score: 43.60  E-value: 3.12e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 258676920   5 LAAhFRV-LSLLNNQRDIVTGLVSNGRLEVADGEKIlGLFLNTLPLRLELCGG-SWSDLVKQ 64
Cdd:cd19532  246 LAA-LQVlLARLLDVDDICIGIADANRTDEDFMETI-GFFLNLLPLRFRRDPSqTFADVLKE 305
starter-C_NRPS cd19533
Starter Condensation domains, found in the first module of nonribosomal peptide synthetases ...
2-82 7.28e-06

Starter Condensation domains, found in the first module of nonribosomal peptide synthetases (NRPSs); Condensation (C) domains of nonribosomal peptide synthetases (NRPSs) catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. While standard C-domains catalyze peptide bond formation between two amino acids, an initial, ('starter') C-domain may instead acylate an amino acid with a fatty acid. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). There are various subtypes of C-domains such as the LCL-type which catalyzes peptide bond formation between two L-amino acids, the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity.


Pssm-ID: 380456 [Multi-domain]  Cd Length: 419  Bit Score: 42.74  E-value: 7.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920   2 SVLLAAHFRVLSLLNNQRDIVTGLVSNGRLEVADGEkILGLFLNTLPLRLELCGG-SWSDLVKQqdVERECLSWRR---Y 77
Cdd:cd19533  244 SFFIALVAAYLHRLTGANDVVLGVPVMGRLGAAARQ-TPGMVANTLPLRLTVDPQqTFAELVAQ--VSRELRSLLRhqrY 320

                 ....*
gi 258676920  78 PLAEL 82
Cdd:cd19533  321 RYEDL 325
beta-lac_NRPS cd19547
Condensation domain of nonribosomal peptide synthetases (NRPSs) similar to Nocardia uniformis ...
6-53 1.03e-05

Condensation domain of nonribosomal peptide synthetases (NRPSs) similar to Nocardia uniformis NocB which exhibits an unusual cyclization to form beta-lactam rings in pro-nocardicin G synthesis; Nocardia uniformis NRPS NocB acts centrally in the biosynthesis of the nocardicin monocyclic beta-lactam antibiotics. Along with another NRPS NocA, it mediates an unusual cyclization to form beta-lactam rings in the synthesis of the beta-lactam-containing pentapeptide pro-nocardicin G. This small subfamily is related to DCL-type Condensation (C) domains, which catalyze condensation between a D-aminoacyl/peptidyl-PCP donor and a L-aminoacyl-PCP acceptor. NRPSs catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). There are various subtypes of C-domains such as the LCL-type which catalyzes peptide bond formation between two L-amino acids, the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. C-domains typically have a conserved HHxxxD motif at the active site; domains belonging to this subfamily have an HHHxxxD motif at the active site.


Pssm-ID: 380469 [Multi-domain]  Cd Length: 422  Bit Score: 42.30  E-value: 1.03e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 258676920   6 AAHFRVLSLLNNQRDIVTGLVSNGRL-EVADGEKILGLFLNTLPLRLEL 53
Cdd:cd19547  248 AAWSMLLALQTGARDVVHGLTIAGRPpELEGSEHMVGIFINTIPLRIRL 296
PRK12316 PRK12316
peptide synthase; Provisional
2-99 1.41e-05

peptide synthase; Provisional


Pssm-ID: 237054 [Multi-domain]  Cd Length: 5163  Bit Score: 41.87  E-value: 1.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920    2 SVLLAAHFRVLSLLNNQRDIVTGLVSNGR-LEVADGEKILGLFLNTLPL----RLELCGGSWsdlvkQQDVERECLSWRR 76
Cdd:PRK12316 4341 TLVQAAWLLLLQRYTGQDTVAFGATVAGRpAELPGIEGQIGLFINTLPViatpRAQQSVVEW-----LQQVQRQNLALRE 4415
                          90       100
                  ....*....|....*....|....*...
gi 258676920   77 Y---PLAELQKtFAGQPLE--FDTAFNF 99
Cdd:PRK12316 4416 HehtPLYEIQR-WAGQGGEalFDSLLVF 4442
LCL_NRPS-like cd19531
LCL-type Condensation (C) domain of non-ribosomal peptide synthetases(NRPSs) and similar ...
3-64 1.73e-05

LCL-type Condensation (C) domain of non-ribosomal peptide synthetases(NRPSs) and similar domains including the C-domain of SgcC5, a free-standing NRPS with both ester- and amide- bond forming activity; LCL-type Condensation (C) domains catalyze peptide bond formation between two L-amino acids, ((L)C(L)). C-domains of NRPSs catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). In addition to the LCL-type, there are various subtypes of C-domains such as the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. Streptomyces globisporus SgcC5 is a free-standing NRPS condensation enzyme (rather than a modular NRPS), which catalyzes the condensation between the SgcC2-tethered (S)-3-chloro-5-hydroxy-beta-tyrosine and (R)-1phenyl-1,2-ethanediol, forming an ester bond, during the synthesis of the chromoprotein enediyne antitumor antibiotic C-1027. It has some acceptor substrate promiscuity as it has been shown to also catalyze the formation of an amide bond between SgcC2-tethered (S)-3-chloro-5-hydroxy-beta-tyrosine and a mimic of the enediyne core acceptor substrate having an amine at its C-2 position. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity. An HHxx[SAG]DGxSx(6)[ED] motif is characteristic of LCL-type C-domains.


Pssm-ID: 380454 [Multi-domain]  Cd Length: 427  Bit Score: 41.57  E-value: 1.73e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 258676920   3 VLLAAhFRV-LSLLNNQRDIVTGL-VSN-GRLEVadgEKILGLFLNTLPLRLELCGG-SWSDLVKQ 64
Cdd:cd19531  251 TLLAA-FQVlLHRYSGQDDIVVGTpVAGrNRAEL---EGLIGFFVNTLVLRTDLSGDpTFRELLAR 312
PRK05691 PRK05691
peptide synthase; Validated
6-99 4.69e-05

peptide synthase; Validated


Pssm-ID: 235564 [Multi-domain]  Cd Length: 4334  Bit Score: 40.54  E-value: 4.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920    6 AAHFRVLSLLNNQRDIVTGLVSNGR-LEVADGEKILGLFLNTLPLRLELCGGSWSDLVKQ--QDVERECLSWRRY---PL 79
Cdd:PRK05691 3511 AAWALVLRRYSGDRDVLFGVTVAGRpVSMPQMQRTVGLFINSIALRVQLPAAGQRCSVRQwlQGLLDSNMELREYeylPL 3590
                          90       100
                  ....*....|....*....|...
gi 258676920   80 AELQKTF---AGQPLeFDTAFNF 99
Cdd:PRK05691 3591 VAIQECSelpKGQPL-FDSLFVF 3612
C_PKS-NRPS_PksJ-like cd20484
Condensation domain of hybrid polyketide synthetase/nonribosomal peptide synthetases (PKS ...
2-99 2.79e-04

Condensation domain of hybrid polyketide synthetase/nonribosomal peptide synthetases (PKS/NRPSs), similar to Bacillus subtilis PksJ; Condensation (C) domains of nonribosomal peptide synthetases (NRPSs) catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. Hybrid PKS/NRPS create polymers containing both polyketide and amide linkages. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity. Members of this subfamily have the typical C-domain HHxxxD motif. PksJ is involved in some intermediate steps for the synthesis of the antibiotic polyketide bacillaene which is important in secondary metabolism. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). There are various subtypes of C-domains such as the LCL-type which catalyzes peptide bond formation between two L-amino acids, the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain.


Pssm-ID: 380472 [Multi-domain]  Cd Length: 430  Bit Score: 38.07  E-value: 2.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920   2 SVLLAAHFRV-LSLLNNQRDIVTGLVSNGRLEvaDG-EKILGLFLNTLPLRLELCG-GSWSDLVKQ-QDVERECLSWRRY 77
Cdd:cd20484  245 STVFLGIFKLlLHRYTGQEDIIVGMPTMGRPE--ERfDSLIGYFINMLPIRSRILGeETFSDFIRKlQLTVLDGLDHAAY 322
                         90       100       110
                 ....*....|....*....|....*....|.
gi 258676920  78 PLAELQK------TFAGQPLeFDTAF---NF 99
Cdd:cd20484  323 PFPAMVRdlniprSQANSPV-FQVAFfyqNF 352
PRK12467 PRK12467
peptide synthase; Provisional
37-99 1.42e-03

peptide synthase; Provisional


Pssm-ID: 237108 [Multi-domain]  Cd Length: 3956  Bit Score: 36.29  E-value: 1.42e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920   37 EKILGLFLNTLP----LRLELCGGSWSDLVKQQDVE-REclsWRRYPLAELQKtFAGQPLE--FDTAFNF 99
Cdd:PRK12467 2921 EQQLGLFINTLPviasPRAEQTVSDWLQQVQAQNLAlRE---FEHTPLADIQR-WAGQGGEalFDSILVF 2986
PRK12316 PRK12316
peptide synthase; Provisional
2-99 1.43e-03

peptide synthase; Provisional


Pssm-ID: 237054 [Multi-domain]  Cd Length: 5163  Bit Score: 36.09  E-value: 1.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258676920    2 SVLLAAHFRVLSLLNNQRDIVTGLVSNGR-LEVADGEKILGLFLNTLPL----RLELCGGSWSDLVKQQDverecLSWRR 76
Cdd:PRK12316 1793 TLVQAAWLLLLQRYTGQETVAFGATVAGRpAELPGIEQQIGLFINTLPViaapRPDQSVADWLQEVQALN-----LALRE 1867
                          90       100
                  ....*....|....*....|....*...
gi 258676920   77 Y---PLAELQKtFAGQPLE--FDTAFNF 99
Cdd:PRK12316 1868 HehtPLYDIQR-WAGQGGEalFDSLLVF 1894
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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