NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|255959659|gb|ACU43038|]
View 

NADH dehydrogenase subunit 4, partial (mitochondrion) [Statilia maculata]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-426 1.70e-141

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 411.08  E-value: 1.70e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659   1 MLSYIFYMVFLIPLCFLNKGWWLIQNLLFFISLLYMININF-FSWSNLSYMFGYDYLSYGLIMLSFWICILMIMASYSVI 79
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLsFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  80 RYKFYNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMY 159
Cdd:MTH00163  81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 160 LYNNLNYLNFSLMYLGNFTNFYLYMSMILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTS 239
Cdd:MTH00163 161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 240 VGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANI 319
Cdd:MTH00163 241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 320 SYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMMISFFSAAYTLYLYS 399
Cdd:MTH00163 321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                        410       420
                 ....*....|....*....|....*..
gi 255959659 400 YSQHGTYYSGMYSSVSGYCREYLLLML 426
Cdd:MTH00163 401 YSQHGKYYSGLYSCSSGKVREYLLLFL 427
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-426 1.70e-141

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 411.08  E-value: 1.70e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659   1 MLSYIFYMVFLIPLCFLNKGWWLIQNLLFFISLLYMININF-FSWSNLSYMFGYDYLSYGLIMLSFWICILMIMASYSVI 79
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLsFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  80 RYKFYNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMY 159
Cdd:MTH00163  81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 160 LYNNLNYLNFSLMYLGNFTNFYLYMSMILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTS 239
Cdd:MTH00163 161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 240 VGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANI 319
Cdd:MTH00163 241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 320 SYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMMISFFSAAYTLYLYS 399
Cdd:MTH00163 321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                        410       420
                 ....*....|....*....|....*..
gi 255959659 400 YSQHGTYYSGMYSSVSGYCREYLLLML 426
Cdd:MTH00163 401 YSQHGKYYSGLYSCSSGKVREYLLLFL 427
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 46-398 1.40e-47

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 169.49  E-value: 1.40e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  46 NLSYMFGYDYLSYGLIMLSFWICILMIMASYSVIRYKfyNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFL 125
Cdd:COG1008   73 GISYHLGVDGISLPLVLLTALLTPLAILASWNEIKKR--PKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFL 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 126 IFGWGYqPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNFSLMYLGN-----FTNFYLYMSMILAFLVKMPMYLVH 200
Cdd:COG1008  151 IGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAaplplTAQLLLFLAFFIAFAVKVPMFPFH 229

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 201 LWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTSVGMIFNMFWLSI-SLVGGFLVSLMCLRQVDMKALIAYSSVA 279
Cdd:COG1008  230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAAlGVIGIIYGALVALAQTDLKRLIAYSSVS 309

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 280 HMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPS 359
Cdd:COG1008  310 HMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGT 389

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 255959659 360 LNLLGEIGLFNSMVGWMWMVMLFLMMISFFSAAYTLYLY 398
Cdd:COG1008  390 SGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 105-387 8.36e-47

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 162.48  E-value: 8.36e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  105 SLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNF------SLMYLGNFT 178
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFdelskaLTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  179 NFYLYMSMILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTSVGMIFNMFWLSISLVGGFL 258
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  259 VSLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLA-NISYERLGSRSLLINKGLLN 337
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 255959659  338 LMPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMMIS 387
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 46-398 3.24e-39

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 147.01  E-value: 3.24e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659   46 NLSYMFGYDYLSYGLIMLSFWICILMIMASYSVIRYkfYNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFL 125
Cdd:TIGR01972  68 GISYHLGVDGISLLLVLLTALLTLLAILASWESIQK--RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLL 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  126 IFGWGyQPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLnFSLMYLGN-----FTNFYLYMSMILAFLVKMPMYLVH 200
Cdd:TIGR01972 146 IGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGT-FDLLELLNlplpfGVQTWLFLAFFIAFAVKVPLFPLH 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  201 LWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRV-FEYMTSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVA 279
Cdd:TIGR01972 224 TWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSIS 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  280 HMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPS 359
Cdd:TIGR01972 304 HMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGT 383

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 255959659  360 LNLLGEIGLFNSMVGWMWMVMLFLMMISFFSAAYTLYLY 398
Cdd:TIGR01972 384 SGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-426 1.70e-141

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 411.08  E-value: 1.70e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659   1 MLSYIFYMVFLIPLCFLNKGWWLIQNLLFFISLLYMININF-FSWSNLSYMFGYDYLSYGLIMLSFWICILMIMASYSVI 79
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLsFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  80 RYKFYNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMY 159
Cdd:MTH00163  81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 160 LYNNLNYLNFSLMYLGNFTNFYLYMSMILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTS 239
Cdd:MTH00163 161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 240 VGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANI 319
Cdd:MTH00163 241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 320 SYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMMISFFSAAYTLYLYS 399
Cdd:MTH00163 321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                        410       420
                 ....*....|....*....|....*..
gi 255959659 400 YSQHGTYYSGMYSSVSGYCREYLLLML 426
Cdd:MTH00163 401 YSQHGKYYSGLYSCSSGKVREYLLLFL 427
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 34-426 1.36e-108

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 326.41  E-value: 1.36e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  34 LYMININFFSWSNLSYMFGYDYLSYGLIMLSFWICILMIMASYSVIRYKFYNNLFLFMIIMLLLMLYCTFCSLSMLSFYF 113
Cdd:MTH00150   3 LLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 114 FFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNFSLMYL---GNFTNFYLYMSMILAF 190
Cdd:MTH00150  83 FFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSlrkLLSSMGLWGLLVFLAF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 191 LVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMK 270
Cdd:MTH00150 163 LVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVK 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 271 ALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLS 350
Cdd:MTH00150 243 SLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFC 322

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 255959659 351 SCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMMISFFSAAYTLYLYSYSQHGTYYSGMYSSVSGYCREYLLLML 426
Cdd:MTH00150 323 IINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLL 398
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-426 1.04e-105

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 320.00  E-value: 1.04e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659   1 MLSYIFYMVFLIPLCFLNKGWWLIQNLLFFISLLYMININ--FFSWSNLSYMFGYDYLSYGLIMLSFWICILMIMASYSV 78
Cdd:MTH00205   1 MSIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSnsFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  79 IRYKFYNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIM 158
Cdd:MTH00205  81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 159 YLYNNLNYLNFSLMYLGNFTNFYLY---MSMILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFE 235
Cdd:MTH00205 161 FLNSLNFSLSMFFNFPLNFSDFYLFlywIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 236 YMTSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFC 315
Cdd:MTH00205 241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 316 LANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMMISFFSAAYTL 395
Cdd:MTH00205 321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400

                        410       420       430
                 ....*....|....*....|....*....|.
gi 255959659 396 YLYSYSQHGTYYSGMYSSVSGYCREYLLLML 426
Cdd:MTH00205 401 YLYSQSQHGKVSSQISSFLAISEREYYILIL 431
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 7-426 5.01e-100

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 305.51  E-value: 5.01e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659   7 YMVFLIPLCFLNKGWWLIQNLLFFISLLYMININFFS--WSNLSYMFGYDYLSYGLIMLSFWICILMIMASYSVIRYKFY 84
Cdd:MTH00014   9 ISLLLLPLIKYPWSWALTFSTLLLLSLFTLLNLYPMSapYSMFTESLSSDMLSAPLITLTLWITALMILASFKIFQNNKA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  85 NNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMYLYNNL 164
Cdd:MTH00014  89 PKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMSILLIFYTN 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 165 NYLNFSLMYLGNFTNFYLYMS---MILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTSVG 241
Cdd:MTH00014 169 NSLSMLMSSMEPPSIYLMNLWwliTILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRMSSLFMHIN 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 242 MIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISY 321
Cdd:MTH00014 249 KSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSALFALANMTY 328

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 322 ERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMMISFFSAAYTLYLYSYS 401
Cdd:MTH00014 329 ETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAYSLFLYTST 408

                        410       420
                 ....*....|....*....|....*
gi 255959659 402 QHGTYYSGMYSSVSGYCREYLLLML 426
Cdd:MTH00014 409 QHGSPPSFMNPLNLFTPRNHTLMTL 433
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-426 5.87e-94

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 290.34  E-value: 5.87e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659   1 MLSYIFYMVFLIPLCFLNKGWWLI---QNLLFFISLLYMININFFSWSNLSYMFGYDYLSYGLIMLSFWICILMIMASYS 77
Cdd:MTH00044   4 LILLSLGIAITSWIVPKNKLWPISisqSSLISLLSLFLLNNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLASIN 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  78 VIRYKFYNN--LFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLL 155
Cdd:MTH00044  84 HLSNNSPNNqrTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLI 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 156 GIMYLYNNLNYLNFSLMYLGNFTNFYLYMS------MILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYG 229
Cdd:MTH00044 164 SLIAIYSSSSSLSIPLSELNWLTSLSSNSSsiwwifCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYG 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 230 LLRVFEYMTSVGMIF-NMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGL 308
Cdd:MTH00044 244 LIRLINLFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGL 323

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 309 CSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMMISF 388
Cdd:MTH00044 324 VSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATV 403

                        410       420       430
                 ....*....|....*....|....*....|....*...
gi 255959659 389 FSAAYTLYLYSYSQHGTYYSGMYSSVSGYCREYLLLML 426
Cdd:MTH00044 404 FGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFL 441
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-426 2.74e-93

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 288.25  E-value: 2.74e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659   1 MLSYIFYMVFLIPLCFLNKgwwliQNLLFFISLLYMININFFS--WSNLSYM--------FGYDYLSYGLIMLSFWICIL 70
Cdd:MTH00124   1 MLKIILPTIMLIPTTLLSK-----PKFLWTNTTTYSLLIALLSlqWLKPPYYptknltqwLGIDQISAPLLVLSCWLLPL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  71 MIMASYSVIRYKFYNN--LFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMF 148
Cdd:MTH00124  76 MILASQNHLQHEPLQRkrTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLI 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 149 ASLPLLLGIMYLYNNLNYLNFSLMYL------GNFTNFYLYMSMILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVL 222
Cdd:MTH00124 156 SSLPLLIAILYLHNQTGTLSLPMLQLthptltNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 223 LKLGGYGLLRVFEYMTSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVL 302
Cdd:MTH00124 236 LKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMIL 315

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 303 MIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLF 382
Cdd:MTH00124 316 MIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIIL 395

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 255959659 383 LMMISFFSAAYTLYLYSYSQHGTYYSGMYSSVSGYCREYLLLML 426
Cdd:MTH00124 396 TGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTL 439
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 5-426 7.60e-88

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 274.12  E-value: 7.60e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659   5 IFYMVFLIPLCFLNKGWWLIQNLLFFISLLYMININFFSWSNLSYMFGYDYLSYGLIMLSFWICILMIMASYSVIRYK-- 82
Cdd:MTH00206   9 LLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSNLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKNEpi 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  83 FYNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMYLYN 162
Cdd:MTH00206  89 NRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLFLQN 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 163 NLNYLNFSLMYLG---NFTNFYLYMSMILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTS 239
Cdd:MTH00206 169 SLGSLSLYILYFSkltTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILILGP 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 240 VGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANI 319
Cdd:MTH00206 249 STKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCLANL 328

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 320 SYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMMISFFSAAYTLYLYS 399
Cdd:MTH00206 329 LYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLYMFV 408

                        410       420
                 ....*....|....*....|....*..
gi 255959659 400 YSQHGTYYSGMYSSVSGYCREYLLLML 426
Cdd:MTH00206 409 MTQHGKTPNHLLSLSPSSTREHLLLFL 435
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-426 7.22e-87

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 271.79  E-value: 7.22e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659   1 MLSYIFYMVFLIPLCFLNKGWWLIQNLL---FFISLLYMINinFFSWSNLSYM----FGYDYLSYGLIMLSFWICILMIM 73
Cdd:MTH00068   1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTtnsLIIAFLSLMW--FNLPSETMNFtnkyFGIDQISSPLLILTCWLLPLMIL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  74 ASYSVIRYKFYNN--LFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASL 151
Cdd:MTH00068  79 ASQNHLKNEPINRqrTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 152 PLLLGIMYLYNNLNYLNFSLMYLGNFTNFYLYMSMI------LAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKL 225
Cdd:MTH00068 159 PLLIALLILQNSLGSLSLILLELMSPMQLMTYTNKIwwlaclLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKL 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 226 GGYGLLRVFEYMTSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIA 305
Cdd:MTH00068 239 GGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMIS 318

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 306 HGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMM 385
Cdd:MTH00068 319 HGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGL 398

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|.
gi 255959659 386 ISFFSAAYTLYLYSYSQHGTYYSGMYSSVSGYCREYLLLML 426
Cdd:MTH00068 399 GTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLAL 439
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-426 2.20e-85

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 268.30  E-value: 2.20e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659   1 MLSYIFYMVFLIPLCFLNKGWWLIQNLL---FFISL--LYMININFFSWSNLSYMFGYDYLSYGLIMLSFWICILMIMAS 75
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTtysLLISLisLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  76 YSVIRYKFYNN--LFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPL 153
Cdd:MTH00110  81 QHHLSKEPLTRkkLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 154 LLGIMYLYNNLNYLNFSLMYLGN------FTNFYLYMSMILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGG 227
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAqplpnsWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 228 YGLLRVFEYMTSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHG 307
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 308 LCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMMIS 387
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400

                        410       420       430
                 ....*....|....*....|....*....|....*....
gi 255959659 388 FFSAAYTLYLYSYSQHGTYYSGMYSSVSGYCREYLLLML 426
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMAL 439
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 27-426 9.57e-77

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 246.02  E-value: 9.57e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  27 LLFFISLLYMININFFSWSNLSYMFGYDYLSYGLIMLSFWICILMIMASYSVIRYKFYNN--LFLFMIIMLLLMLYCTFC 104
Cdd:MTH00127  33 LIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILASQNHTAPEPINRqrMYITLLTSLQIFLILAFG 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 105 SLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMYL------YNNLNYLNFSLMYLGNFT 178
Cdd:MTH00127 113 ATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLqnstgtLSMLTLQYSQPLQLSSWA 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 179 NFYLYMSMILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTSVGMIFNMFWLSISLVGGFL 258
Cdd:MTH00127 193 DKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIM 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 259 VSLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNL 338
Cdd:MTH00127 273 TGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMI 352

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 339 MPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMMISFFSAAYTLYLYSYSQHGTYYSGMYSSVSGYC 418
Cdd:MTH00127 353 LPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHT 432


                 ....*...
gi 255959659 419 REYLLLML 426
Cdd:MTH00127 433 REHLLMAL 440
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 46-398 1.40e-47

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 169.49  E-value: 1.40e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  46 NLSYMFGYDYLSYGLIMLSFWICILMIMASYSVIRYKfyNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFL 125
Cdd:COG1008   73 GISYHLGVDGISLPLVLLTALLTPLAILASWNEIKKR--PKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFL 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 126 IFGWGYqPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNFSLMYLGN-----FTNFYLYMSMILAFLVKMPMYLVH 200
Cdd:COG1008  151 IGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAaplplTAQLLLFLAFFIAFAVKVPMFPFH 229

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 201 LWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTSVGMIFNMFWLSI-SLVGGFLVSLMCLRQVDMKALIAYSSVA 279
Cdd:COG1008  230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAAlGVIGIIYGALVALAQTDLKRLIAYSSVS 309

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 280 HMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPS 359
Cdd:COG1008  310 HMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGT 389

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 255959659 360 LNLLGEIGLFNSMVGWMWMVMLFLMMISFFSAAYTLYLY 398
Cdd:COG1008  390 SGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 105-387 8.36e-47

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 162.48  E-value: 8.36e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  105 SLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNF------SLMYLGNFT 178
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFdelskaLTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  179 NFYLYMSMILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTSVGMIFNMFWLSISLVGGFL 258
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  259 VSLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLA-NISYERLGSRSLLINKGLLN 337
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 255959659  338 LMPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMMIS 387
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 37-398 7.82e-45

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 162.15  E-value: 7.82e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  37 ININFFSWSNLsyMFGYDYLSYGLIMLSFWICILMIMASYSVIRYKFYNNLFLFMIIMLLLMlyCTFCSLSMLSFYFFFE 116
Cdd:MTH00204  67 SPTLNFQWGPL--VFAVDGVSLFFILLTTLLIPICILISWKSIKFLFKEFLLCLLFLEVLLI--GVFSVLDLLLFYILFE 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 117 GSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLN---YLNFSLMYLGNFTNFYLYMSMILAFLVK 193
Cdd:MTH00204 143 GILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGttdYQILLNIKLPLSIQKWLLVGFFLSLAVK 222

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 194 MPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRV-FEYMTSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKAL 272
Cdd:MTH00204 223 IPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFsWPLFPAASEYFAPLIVMLSVIAVIYGSLTTCRQVDFKRL 302

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 273 IAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSC 352
Cdd:MTH00204 303 IAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLA 382

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 255959659 353 NMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMMISFFSAAYTLYLY 398
Cdd:MTH00204 383 NMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 46-398 5.72e-42

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 154.59  E-value: 5.72e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  46 NLSYMFGYDYLSYGLIMLSFWICILMIMASYSVI--RYKFYNNLFLFMIIMLLLMlyctFCSLSMLSFYFFFEGSLIPTL 123
Cdd:PRK05846  73 GISYHLGVDGISLLLVVLTALLTPLAVLASWEEIkkRVKFYMAALLWLEGGVIGV----FAALDLLLFYVFFEAMLIPMY 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 124 FLIFGWGYqPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNFSLMY-------LGNFTNFYLYMSMILAFLVKMPM 196
Cdd:PRK05846 149 FLIGVWGG-KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVYYNATGTFDIadllnlpLPPGVQYWLFLAFFIAFAVKMPM 227

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 197 YLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVfeymtSVGM------IFNMFWLSISLVGGFLVSLMCLRQVDMK 270
Cdd:PRK05846 228 FPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRF-----SLPLfpdashEFAPIIITLGVIAIIYGALVALAQTDIK 302

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 271 ALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLS 350
Cdd:PRK05846 303 KLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFA 382

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 255959659 351 SCNMAAPPSLNLLGE----IGLFNSmVGWMWMVMLFLMMisfFSAAYTLYLY 398
Cdd:PRK05846 383 MASLGLPGTSGFVGEflilLGSFQV-NPVIAFIATTGLI---LAAVYSLWLY 430
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 51-425 1.23e-41

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 153.67  E-value: 1.23e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  51 FGYDYLSYGLIMLSFWICILMIMASYSVIRYKFYNNLFLFMIIMLLLMlyCTFCSLSMLSFYFFFEGSLIPTLFLIFGWG 130
Cdd:MTH00217  76 FAVDGISIFFLILTALLTPICILISWNSIKFLIKEFLLCLLVIEILLM--GVFTILDLVGFYILFEGILIPMFLIIGIWG 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 131 YQPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNFSLMY---LGNFTNFYLYMSMILAFLVKMPMYLVHLWLPKAH 207
Cdd:MTH00217 154 SREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQALCclkIEKELQYFIFLGFFLSLAIKIPKIPFHIWLPQAH 233

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 208 VEAPVSGSMILAGVLLKLGGYGLLRV-FEYMTSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGLAVG 286
Cdd:MTH00217 234 VEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASEYFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTL 313

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 287 GLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLLGEI 366
Cdd:MTH00217 314 GIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEF 393

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 255959659 367 GLFNSMVGWMWMVMLFLMMISFFSAAYTLYLYSYSQHGTYYSGMYSSVSGYCREYLLLM 425
Cdd:MTH00217 394 LSLLAAFEYSYIVGVLASLGMVLSAGYSIYLYNRVCFGAPSKYLYFSRDLNRREFYVLL 452
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 46-398 3.24e-39

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 147.01  E-value: 3.24e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659   46 NLSYMFGYDYLSYGLIMLSFWICILMIMASYSVIRYkfYNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFL 125
Cdd:TIGR01972  68 GISYHLGVDGISLLLVLLTALLTLLAILASWESIQK--RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLL 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  126 IFGWGyQPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLnFSLMYLGN-----FTNFYLYMSMILAFLVKMPMYLVH 200
Cdd:TIGR01972 146 IGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGT-FDLLELLNlplpfGVQTWLFLAFFIAFAVKVPLFPLH 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  201 LWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRV-FEYMTSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVA 279
Cdd:TIGR01972 224 TWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSIS 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  280 HMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPS 359
Cdd:TIGR01972 304 HMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGT 383

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 255959659  360 LNLLGEIGLFNSMVGWMWMVMLFLMMISFFSAAYTLYLY 398
Cdd:TIGR01972 384 SGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 50-397 4.31e-38

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 144.29  E-value: 4.31e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  50 MFGYDYLSYGLIMLSFWICILMIMASYSVIRYkfYNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIFGW 129
Cdd:MTH00226  97 VFAVDGISIYFIILTGFIVPCSILISWHSVKY--LTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGIW 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 130 GYQPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNFSLMYLGNF-----TNFYLYMSMILAFLVKMPMYLVHLWLP 204
Cdd:MTH00226 175 GSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCSHvvseqTQKWIFLGIFLAMAVKIPIFPFHIWLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 205 KAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTSVG-MIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGL 283
Cdd:MTH00226 255 KAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGaQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGL 334

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 284 AVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLL 363
Cdd:MTH00226 335 VSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFI 414

                        330       340       350
                 ....*....|....*....|....*....|....
gi 255959659 364 GEIGLFNSMVGWMWMVMLFLMMISFFSAAYTLYL 397
Cdd:MTH00226 415 GEYLSILSSFNWNPIIGVFVCSGVILSAVYSFYF 448
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 26-425 1.17e-37

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 141.20  E-value: 1.17e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  26 NLLFFISLLYMININFFSWSNLSYMFGYDYLSYGLIMLSFWICILMIMASYSVIRYKFYNNLFLFMIIMLLLMLYCTFCS 105
Cdd:MTH00094   2 SLLFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFVS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 106 LSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMYLYNNlnylnFSLMYLGNFTNFYLYMS 185
Cdd:MTH00094  82 SNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFF-----FSLCYFDFFLSWEMFFI 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 186 MILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVfeyMTSVGMIFNMFWLSISLVGGFLVSLMCLR 265
Cdd:MTH00094 157 LSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRI---LGSLNFVYNNFWIIFSLLGMILSSFCCVF 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 266 QVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALW 345
Cdd:MTH00094 234 QSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLI 313

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 346 WFLLSSCNMAAPPSLNLLGEIGLFNSMVGWMWMVMLFLMMISFFSAAYTLYLYSYSQHGTYYSGMYSSVSGYCREYLLLM 425
Cdd:MTH00094 314 FSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMM 393
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 51-402 9.55e-25

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 105.23  E-value: 9.55e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  51 FGYDYLSYGLIMLSFWICILMIMASYSVIRYKFYNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIfGWG 130
Cdd:COG0651   72 LVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLV-ALG 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 131 YQPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNFSLM--YLGNFTNFYLYMSMIL---AFLVKMPMYLVHLWLPK 205
Cdd:COG0651  151 GTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaaRLAELDPGLLLAAFALllvGFGIKAALFPLHFWLPD 230

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 206 AHVEAPVSGSMILAGVLLKLGGYGLLRVFEYM--TSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGL 283
Cdd:COG0651  231 AYPAAPSPVSALLSGLLTKVGVYAILRVLTLLfgADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGY 310

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 284 AVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLL 363
Cdd:COG0651  311 ILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFV 390

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 255959659 364 GEIGLFNSMV-GWMWMVMLFLMMISFFSAAYTLYLYSYSQ 402
Cdd:COG0651  391 SKWLLLQAALeAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 47-340 1.14e-22

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 100.11  E-value: 1.14e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  47 LSYMFGYDYLSYGLIMLSFWICILMIMASYSVIRYKfynNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLI 126
Cdd:PRK12561  51 LEWSLGVDGLSMPLVLLSGLITTLSIFASWKVTRKP---RLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLI 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 127 FGWGYQpERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNFSLMYLGNFT-----NFYLYMSMILAFLVKMPMYLVHL 201
Cdd:PRK12561 128 SIWGGQ-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAKSyplalELLLYAGFLIAFGVKLPIFPLHT 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 202 WLPKAHVEAPVSGSMILAGVLLKLGGYGLLRV-FEYMTSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAH 280
Cdd:PRK12561 207 WLPDAHGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSH 286

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 281 MGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMP 340
Cdd:PRK12561 287 MGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMP 346
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
47-337 1.06e-21

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 97.08  E-value: 1.06e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  47 LSYMFGYDYLSYGLIML-SFWICILMIMASYSVIRYKFYNNLflfmIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFL 125
Cdd:PRK06473  71 LSYHLGVDGLSLPLLVLnSLLTLIAIYSSDESIQRPRFYYSL----LLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLL 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 126 IFGWGYQpERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNFSLMYLGNF-----TNFYLYMSMILAFLVKMPMYLVH 200
Cdd:PRK06473 147 IAIWGGQ-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHtlplsTQLLLLAPILVGFGIKIPLVPFH 225

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 201 LWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTSVGMIFNMFWLSI-SLVGGFLVSLMCLRQVDMKALIAYSSVA 279
Cdd:PRK06473 226 TWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATwAVVSVLYGASCAIAQKDMKKMVAYSSIG 305

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 255959659 280 HMG---LAVGGLMTLNTWGFYMTfvlMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLN 337
Cdd:PRK06473 306 HMGyilLAAAAATPLSILAAVFQ---MISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 47-395 3.93e-20

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 92.46  E-value: 3.93e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  47 LSYMFGYDYLSYGLIMLSFWICILMIMASYSViryKFYNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLI 126
Cdd:PRK02546  79 LTWSVGADGLSMPLILLTGFITTLAVLAAWPV---TFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLL 155

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 127 FGWGYQpERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNFSLMYLGN---FTNFYL--YMSMILAFLVKMPMYLVHL 201
Cdd:PRK02546 156 AIWGGK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTALAAkdfGLGFQLlcYAGLLIAYGVKLPIVPLHT 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 202 WLPKAHVEAPVSGSMILAGVLLKLGGYGLLRV-FEYMTSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAH 280
Cdd:PRK02546 235 WLPDAHGEATAPVHMLLAGILLKMGGYALLRMnAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISH 314

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 281 MGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSM-ALWwfllSSCNMAappS 359
Cdd:PRK02546 315 MGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMfAMW----TACSLA---S 387

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 255959659 360 LNLLGeiglfnsMVGWMWMVMLFLMMISffSAAYTL 395
Cdd:PRK02546 388 LALPG-------MSGFVAELMVFVGFAT--SDAYTL 414
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 16-426 6.22e-19

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 88.06  E-value: 6.22e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  16 FLNKGWWLIQNLLFFISLLYMININFFSWSNL---SYMFGYDYLSYGLIMLSFWICILMIMASYSVIrykfyNNLFLFMI 92
Cdd:MTH00062   3 FFSVGFFLGFLLLLLFCLLYSSGVGCCILVVNnvfNGLFIFDSLSFYLILLVLFLGLYSQVMFYNLL-----SGVSRFFL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  93 IMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNFSLM 172
Cdd:MTH00062  78 FLSLIFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDW 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 173 YLGNFTNFYLYMSMILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTSVGMIFNMFWLSIS 252
Cdd:MTH00062 158 GSDDSVSLIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGSFLGYLFLCCLF 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 253 LVGGFLVSlmcLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLIN 332
Cdd:MTH00062 238 SVFFLITA---CSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLL 314

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 333 KGLLNLMPSMaLWWFLLSSCNMAA-PPSLNLLGEIGLFNSMVGwMWMVMLFLMMISFFSAAYTLYLYSysqHGTYYSGMY 411
Cdd:MTH00062 315 KSGINGSLVL-RVIVVFSFLSLCSfPPTIQFFCEVFLVSSSFG-VLVYLLFWCFYLFFGGLVPLILLG---HLLIRSESY 389

                        410
                 ....*....|....*
gi 255959659 412 SSVSGYCREYLLLML 426
Cdd:MTH00062 390 ESINVSNYSYLFFLI 404
ndhD CHL00011
NADH dehydrogenase subunit 4
 39-395 1.47e-17

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 84.61  E-value: 1.47e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  39 INFFswsNLSYMFGYDYLSYGLIMLSFWICILMIMASYSVIRYkfyNNLFLFmiimLLLMLYC----TFCSLSMLSFYFF 114
Cdd:CHL00011  71 INFF---DFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRN---SRLFYF----LMLAMYSgqigLFSSRDLLLFFIM 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 115 FEGSLIPTLFLIFGWGYQpERLQAGIYLLFYTMFASLPLLLGIMYLYNNLN-YLNFSLMYLGNFT-----NFYLYMSMIL 188
Cdd:CHL00011 141 WELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGMGLYGSnEPTLNFETLANQSypvalEILFYIGFLI 219

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 189 AFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRV-FEYMTSVGMIFNMFWLSISLVGGFLVSLMCLRQV 267
Cdd:CHL00011 220 AYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQR 299

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 268 DMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMalwWF 347
Cdd:CHL00011 300 NLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKI---FT 376

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 255959659 348 LLSSCNMAappSLNLLGeiglfnsMVGWMWMVMLFLMMISffSAAYTL 395
Cdd:CHL00011 377 MFSSFSMA---SLALPG-------MSGFVAELIVFFGIIT--SQKYLL 412
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-102 1.61e-14

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 69.48  E-value: 1.61e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659    1 MLSYIFYMVFLIPLCFLNKGWWL------IQNLLFFISLLYMININFFSWSNLSYMFGYDYLSYGLIMLSFWICILMIMA 74
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLwttstlYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 255959659   75 SYSVIRY--KFYNNLFLFMIIMLLLMLYCT 102
Cdd:pfam01059  81 SQKHLKSepNNRQRTFIFLLILLQLFLILT 110
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
47-369 2.42e-14

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 74.75  E-value: 2.42e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  47 LSYMFGYDYLSYGLIMLSfwiCILMIMASYSVIRYKFYNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLI 126
Cdd:PRK07363  71 LSYSLGVDGLSLPLLVLN---SLLTWIAIYSIGENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLI 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 127 FGWGYQpERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNF-----SLMYLGNFTNFYLYMSMILAFLVKMPMYLVHL 201
Cdd:PRK07363 148 AIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFdydaiSTQNLSLNTQLILLTGLLLGFGIKIPLVPLHT 226

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 202 WLPKAHVEAPVSGSM----ILAGVLLKLGGYGLLRVFEYMTSVGMIFNMFWLSISLVGGflvSLMCLRQVDMKALIAYSS 277
Cdd:PRK07363 227 WLPDAYTEASPAVAIllggVLAKLGTYGLLRFGLQLFPQTWSLVAPGLAIIGTISVIYG---ALSAIAQKDIKRMVAYSS 303

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 278 VAHMG---LAVGGLMTLNTWGfymTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNM 354
Cdd:PRK07363 304 IGHMGyilVAAAAGTQLSLLG---AVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPIRGLPLTSALLVLAGM 380

                        330
                 ....*....|....*
gi 255959659 355 AAPPSLNLLGEIGLF 369
Cdd:PRK07363 381 ASAGIPGLVGFVAEF 395
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 51-400 3.42e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 67.98  E-value: 3.42e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  51 FGYDYLSYGLIMLSFWICILMIMASYSVIRYKfyNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIfGWG 130
Cdd:PRK08375  73 LRADSLSALFLLVTSILAIAALLYAIGYGEHR--QTRFYALFLLLLAGLLGALLTADLFNLFVFLEIMSLSSYALV-AMG 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 131 YQPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYLNFSL---MYLGN---FTNFYLymsMILAFLVKMPMYLVHLWLP 204
Cdd:PRK08375 150 GDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADlagALAENptvVTAFGF---VLLALALKAAVFPLHTWLP 226

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 205 KAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTSVGMIFNMFWLSISLVGGFLV----SLMCLRQVDMKALIAYSSVAH 280
Cdd:PRK08375 227 RAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWLLAVLALLSmlvgSLAALGQDDVKRVLAYSTVSQ 306

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 281 MGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSL 360
Cdd:PRK08375 307 MGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTS 386

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 255959659 361 NLLGEIGLFNSMVG-WMWMVMLFLMMISFFSAAYTLYLYSY 400
Cdd:PRK08375 387 GFVSKWYLVVGAVEaGQWLVLAVLLASSLLALLYFLRIWYR 427
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 11-374 2.63e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 58.97  E-value: 2.63e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  11 LIPLCFLNKGWWLIQNLLFFIS----LLYMININFFS-----------WSNLSYMFGYDYLSYGLIMLSFWICILMIMAS 75
Cdd:PRK08667  18 VIPLVFRHKRKRVWQSVLWLVIaialLLFAGSLQLFTgnpldiplwgiAPGLDITFHIDRLAAFFIILIGLVSLCVAIYS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  76 YSVIRYKFYN---NLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLP 152
Cdd:PRK08667  98 LGYNEHMSSNeraNLLSALTALFILSMLGVVASANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVF 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 153 LLLGIMYLYNNLNYLNFSLMYLGNFTNFYLYMSMILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLR 232
Cdd:PRK08667 178 LMLGIIVLFIQTGSFELSPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVR 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 233 VFEYMTSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGL-----------AVGGLMTLNTWGFYMTFV 301
Cdd:PRK08667 258 FLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIilmgiglyvifGVYGLDTLALLALGGALF 337

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 255959659 302 LMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMVG 374
Cdd:PRK08667 338 HSLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFFQ 410
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 199-365 3.74e-09

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 58.40  E-value: 3.74e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 199 VHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVfeYMTSVGMIFNMF----WLSISLVGGFLVSLMCLRQVDMKALIA 274
Cdd:PRK06458 233 MHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRY--YILIDAAIGSDFpgrlLLIFGLLSVLVAAFFLLRQRDIKRLFA 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 275 YSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMAlWWFLLSSCNM 354
Cdd:PRK06458 311 YSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTG-WGLMLGALAI 389

                        170
                 ....*....|..
gi 255959659 355 A-APPSLNLLGE 365
Cdd:PRK06458 390 AgMPPFGVFISE 401
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 186-399 1.19e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 53.82  E-value: 1.19e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 186 MILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFE--YMTSVGMIFNMFWLSISL-----VGGFL 258
Cdd:PRK12667 229 ALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYtiFGISPSLIDFRAALSPILiilgaVSAII 308

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 259 VSLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNL 338
Cdd:PRK12667 309 GALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRK 388

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 255959659 339 MPSMALWWFLLSSCNMAAPPSLNLLGEIGLFNSMvgwMWMVMLFLMMISFFSAAYTLYLYS 399
Cdd:PRK12667 389 MPIASFAFLIGALSLVGIPPLNGFFSKLLLFNAL---LESGFYLPALVLLIASAISLVGYF 446
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 186-397 2.59e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.45  E-value: 2.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 186 MILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYM--TSVGMIFNMFWLSISLVGGFLVSLMC 263
Cdd:PRK08676 212 IFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSM 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 264 LRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMA 343
Cdd:PRK08676 292 LSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVFRLQPVAA 371

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 255959659 344 LWWFLLSSCNMAAPPSLNLLGEIGLFNSMVGW-MWMVMLFLMMISFFSAAYTLYL 397
Cdd:PRK08676 372 WGVILGSAAIIGMPPFPLFLSKFFILLQLGGIsVWLVLAVLLLLLLAASSFAIFL 426
PRK12646 PRK12646
DUF4040 family protein;
82-361 1.46e-06

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 50.52  E-value: 1.46e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  82 KFYNNLFLFMIIMLLLMLyctfcSLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMYLY 161
Cdd:PRK12646 111 RFYFYLTLFMFSMIGIVL-----SDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLY 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 162 NNLNYLNFS--LMYLGNFTNFYLYMSMILAFLV----KMPMYLVHLWLPKAhVEAPVSGSMILAGVLLKLGGYGLLRVFE 235
Cdd:PRK12646 186 IMTGTNNITeiLGQADHIKNHGLFIPMIFMFLLgaftKSAQFPFHIWLPRA-MAAPTPVSAYLHSATMVKAGIFLLFRFT 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 236 YMTSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGL-----AVGGLMTLNTWGFYMTFVLMIA----- 305
Cdd:PRK12646 265 PLLGLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMimamvGIGGGYAQHQQDAIASIYVFVLfaalf 344

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 306 ----HGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALwWFLLSSCNMAAPPSLN 361
Cdd:PRK12646 345 hlmnHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNL-VMTIAALSMAGVPFLN 403
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 88-323 1.74e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 49.95  E-value: 1.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  88 FLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTlFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMYLYNNLNYL 167
Cdd:PRK07234  96 FYAQLLILHGSVNAAFVCADLISLYVALEVLSIAT-FLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTF 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 168 NFSLMYLGNFTNFYLymsMILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTSVGMIFNMF 247
Cdd:PRK07234 175 AFSGLATADPEAFAL---IALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIF 251

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 255959659 248 WLSISLVGgflvSLMCLRQVDMKALIAYSSVAHMGLAVGGLMtlnTWGFYmtfvlMIAHGLCSSGLFCLANISYER 323
Cdd:PRK07234 252 GVGTALLG----VLFALLEKDLKRMLAFSTISQLGFILAAPL---VGGLY-----ALAHGLVKSTLFLCAGALPSR 315
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 57-395 2.34e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 49.81  E-value: 2.34e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  57 SYGLIMLSF-WICILMIMASYSVIRYKFYNNLFLFMIIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIfGWGYQPER 135
Cdd:PRK06589  86 LIFLLLIGFlWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI-GHTRNNIS 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 136 LQAGIYLLFYTMFASLPLLL-GIMYLYNNLNYLNFSLMYLGNFTNFYLYMSMILAFLVKMPMYLVHLWLPKAHVEAPVSG 214
Cdd:PRK06589 165 LSGGYKYLKILMISALLLFLpAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVS 244

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 215 SMILAGVLLKLGGYGLLRVFEY---MTSVGMIFNMF-WLS-ISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGLAVGGLM 289
Cdd:PRK06589 245 ALLHAVIVVKTGLFCIYKILLYifgLSYLQRIFAEFnWLIfIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAF 324

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 290 TLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLLGEIGLF 369
Cdd:PRK06589 325 ILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLIL 404

                        330       340       350
                 ....*....|....*....|....*....|.
gi 255959659 370 -----NSMVGWMWMVMLFLMMISFFSAAYTL 395
Cdd:PRK06589 405 laaseQNQPWLSIIVMLVVIASSILSALYLL 435
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 82-397 2.82e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 49.33  E-value: 2.82e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  82 KFYNNLFLFMIIMLLLMLyctfcSLSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGImyly 161
Cdd:PRK08376 122 KYYTLILLLELGMLGMAI-----TGDLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGI---- 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 162 nnlnylnfSLMY--LGNFTNFYLYMSMIL---------------AFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLK 224
Cdd:PRK08376 193 --------ALLYgqYGTLNMAYLAVKMSEnptvvakialalfiaGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLVIKQA 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 225 LGGYGLLRVFEYMTSVGMIFNMFWLSISL--VGGFLVSLMCLRQVDMKALIAYSSVAHMG---LAVG-GLMTLNTWGFYM 298
Cdd:PRK08376 265 GLYALARVLFSIYGPAINLATVGWVIIILgcLTMFVGVAMAVVQKDVKRLLAYHSVSQIGymlLGLGvGLAALGDPAMAS 344

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 299 T-FVLM-------IAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPsMALWWFLLSSCNMAAPPSLN------LLG 364
Cdd:PRK08376 345 YgEIALaggiyhiVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMP-KTTIAFLIGAAAIVGLPPFNgfaskwLIY 423

                        330       340       350
                 ....*....|....*....|....*....|....
gi 255959659 365 E-IGLFNSMVGWMWMVMLFLMMISFFSAAYTLYL 397
Cdd:PRK08376 424 EsSALFNPILGVIAMIGSVLTLASFVKVFHTAFF 457
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 185-383 3.70e-05

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 45.91  E-value: 3.70e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 185 SMILAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVFEYMTSVGMIFNMFWLSI--SLVGGFLVSLM 262
Cdd:PRK08377 211 LLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLVIimATLTVFFAELS 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 263 CLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSM 342
Cdd:PRK08377 291 ALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLT 370

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 255959659 343 ALWWFLLSSCNMAAPPSLNLLGEIGLFNSMV--GWMWMVMLFL 383
Cdd:PRK08377 371 ALALTIGALSTVGIPLFNVFWSKFRIILAGLsaGYTWPVALVL 413
PRK12650 PRK12650
DUF4040 family protein;
200-395 1.14e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 44.65  E-value: 1.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 200 HLWLPKAHVEA-PVS-----GSMILAGVLLKLggygllrVFEYMTSVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALI 273
Cdd:PRK12650 228 HFWLPEAMAAItPVSaflhaAAVVKAGIYLLL-------RFSPVFHDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLT 300

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 274 AYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPsMALWWFLLSSCN 353
Cdd:PRK12650 301 AYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMP-FTFVSVTIAALS 379

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 255959659 354 MAA-PPSLNLLGEIGLFNSMVG------WMWMVMLFLMMISFFSAAYTL 395
Cdd:PRK12650 380 MAAvPPLFGFVSKEGMLTAFLEapggnaGVVLLLVGAALGAVFTFAYSA 428
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 82-340 5.21e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 42.21  E-value: 5.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  82 KFYNNLFLFMIIMLLLMLyctfcSLSMLSFYFFFEGSLIPTLFLIfgwGYQPER-------LQAgiylLFYTMFASLPLL 154
Cdd:PRK12647  96 RFYSYILLFMASMLGLVL-----SDNLITLFVFWELTSITSFLLI---GFNHEReaarraaLQA----LLVTGGGGLALL 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 155 LGIMYLYNNLNYLNFSLMYLGN--FTNFYLYMSMILAFLV----KMPMYLVHLWLPKAhVEAPV-------SGSMILAGV 221
Cdd:PRK12647 164 AGLILLGNVTGTYSLSELLASGdvIREHPLYLAILLLVLGgaftKSAQFPFHFWLPNA-MEAPTpvsaylhSATMVKAGI 242

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 222 LLKLGgygllrvfeyMTSVgMIFNMFW-LSISLVGG---FLVSLMCLRQVDMKALIAYSSVAHMGLAVgGLMTLNTWGFY 297
Cdd:PRK12647 243 YLLAR----------LNPV-LGGTPLWqTILPLFGGltmLTGALLAVRQTDLKLILAYSTVSALGTLV-MLLGLGSELAI 310

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 255959659 298 MTFVL-MIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMP 340
Cdd:PRK12647 311 KAAVLfLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMP 354
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 188-394 5.75e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.03  E-value: 5.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 188 LAFLVKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVF-----EYMTSVGMIFNMFWLSISLVGGFLVSLM 262
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVydvfkANFVFTTLPFNNVFMILAALAIVFGSVL 296

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 263 CLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNLMPSM 342
Cdd:PRK12662 297 AILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSMPKI 376

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 255959659 343 ALWWFLLSSCNMAAPPSLNLLGEIGLFNSMV-GWMWMVMLFLMMISFFSAAYT 394
Cdd:PRK12662 377 TLAFVLLSLSLIGMPPTSGFVAKWYILDAFIkSNAWIGLVVLLVGSGLSVIYV 429
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-314 9.69e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 41.52  E-value: 9.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659   1 MLSYIFYMVFLIPLCFLNKGW-WLIQNLLFFISLLYMININFFSW----SNLSYMFGYDYLSYGLIMLSFWICILMIMAS 75
Cdd:PRK08668   3 LTLLLLTPLIGSVLAYLLKKInEKIGVIGNALPLLFLIKLYFTLKvgtgEKLTLFFGGFKLTFTLTHLSWFFAMISLLVI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  76 YSVI--------RYKFYNNLFLfmiIMLLLMLYCTFCSLSMLSFYFFFEGSLIPTLFLIFgWGYQPERLQAGIYLLFYTM 147
Cdd:PRK08668  83 FSVAffmvsektKNDAYFNMFA---LMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVLSAI 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 148 FASLpLLLGIMYLYNNLNYLNFS-----LMYLGNFTNFYLYMSMILAF-LVKMPMYLVHLWLPKAHVEAPVSGSMILAGV 221
Cdd:PRK08668 159 GAYA-MLYAIFLIYAKTGTFDFAdisqgLINDTSTGFALIVFLFLLAFgVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQ 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 222 LLKLGGYGLLRVFEYMTSVGMIFNMFWLS--------ISLVGG---FLVSLMCLRQVDMKALIAYSSVAHMGLAVGGLMT 290
Cdd:PRK08668 238 LSKLGAYGFLLVLYVLPGTKLFSEFGTYRgvplfnyiLAWLGNisiIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGL 317

                        330       340
                 ....*....|....*....|....
gi 255959659 291 LNTWGFYMTFVLMIAHGLCSSGLF 314
Cdd:PRK08668 318 GTSLGFAGGLFHVFNHALFKGLFF 341
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 83-361 2.13e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 40.26  E-value: 2.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  83 FYNNLFLFMIIMLLLMLyctfcslSMLSFYFFFEGSLIPTLFLIFGWGYQPERLQAGIYLLFYTMFASLPLLLGIMYLYN 162
Cdd:PRK06521 117 FFYNLFLASMVLVLLAD-------DAFSFLVAWETMSLSSWFLVIANHREAEIRRAGFLYLLMAHAGALAILLAFGLLAR 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 163 NLNYLNFSLMYLGNFTNFYLYMSMILAFL---VKMPMYLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRV-FEYMT 238
Cdd:PRK06521 190 ESGSYDFAAMRAAHLSPFWASLVFLLALFgfgAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRVvFDLLG 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 239 SVGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGL---AVG--------GLMTLNTWGFYMTFVLMIAHG 307
Cdd:PRK06521 270 APGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIifvGLGlamvfiayGMPLLAALALTAALYHLLNHA 349

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 255959659 308 LCSSGLFCLANISYERLGSRSLLINKGLLNLMPSMAlWWFLLSSCNMAAPPSLN 361
Cdd:PRK06521 350 LFKSLLFLGAGAVLHATGTRDMEKLGGLIRRMPWTA-WAFLIGCLAISALPPLN 402
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 82-386 6.85e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 38.42  E-value: 6.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659  82 KFYNNLFLFMIIMLLLMLyctfcSLSMLSFYFFFEGSLIPTLFLIfGWGYQPERLQAGIYLLFYTMFASLPLLLGI-MYL 160
Cdd:PRK06525 114 RYYAFLLLFIGAMAGLVY-----SSTLLGLLLFFEITGLCSWALI-SYYQSPKALRSALKALLITHIGSLGLYLAAaTLF 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 161 YNNLNYLNFSLMYLGNFTNFYLYMSMILAFLVKMPMYLVHLWLPKAhVEAPVSGSMIL-AGVLLKLGGYGLLRVFEYMTS 239
Cdd:PRK06525 188 LQTGTFALSALSGLHGSLKYLVFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGP 266

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 240 VGMIFNMFWLSISLVGGFLVSLMCLRQVDMKALIAYSSVAHMGLAVGGLmTLNTWGFYMTFVLMIA----HGLCSSGLFC 315
Cdd:PRK06525 267 IPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGL-SLAILGSRLALEGSIAyifnHAFAKSLFFL 345

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 255959659 316 LAN-ISYErLGSRSLLINKGLLNLMPSMALWWFLLSSCNMAAPPSLNLLGEIGLFN-----SMVGWMWMVMLFLMMI 386
Cdd:PRK06525 346 VAGaLSYS-CGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAagfelSVEYWILLPAMVLLLI 421
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 260-344 8.27e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 38.17  E-value: 8.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255959659 260 SLMCLRQVDMKALIAYSSVAHMGLAVGGLMTLNTWGFYMTFVLMIAHGLCSSGLF-CLANISYERLGSRSLLINKGLLNL 338
Cdd:COG1007  284 NLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFaVILLLSRKGGEAEEIEDLAGLARR 363


                 ....*.
gi 255959659 339 MPSMAL 344
Cdd:COG1007  364 SPLLAL 369
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH