|
Name |
Accession |
Description |
Interval |
E-value |
| ndhF |
CHL00025 |
NADH dehydrogenase subunit 5 |
1-502 |
0e+00 |
|
NADH dehydrogenase subunit 5
Pssm-ID: 214338 [Multi-domain] Cd Length: 741 Bit Score: 925.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFEIFNNLILNNRVNLLFLT*****L*GGPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARL 80
Cdd:CHL00025 201 GSFEFRDLFEIFNNLIYNNEVNLLFATLCAFLLFLGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 81 LPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGS 160
Cdd:CHL00025 281 LPLFIVIPYIMNLISLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGS 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 161 GSIIHSMEAIVGYSPDKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IACSTAG 240
Cdd:CHL00025 361 GSVIHSMEPIVGYSPDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIAWSTAG 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 241 LTAFYMSRIYLL*FEGHLN*YFINYSGKKSSSFYSISLWGKEEDKKLNRNFglvPLLTMNNTKRASFFANKTYKISNNVR 320
Cdd:CHL00025 441 LTAFYMFRIYLLTFEGHLRVHFQNYSGKKNSSFYSISLWGKEESKKINKLL---LLLTMNNNERVSFFSKKTYKIDGNVR 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 321 NKTFITVENFGlNTRTFYYPNESDNTILFPMLVLLLFTLFIGAIGIPFNQEGIDFDILSKLLTPSINLLHTNSENFVDWY 400
Cdd:CHL00025 518 NMIRSFITIFG-NKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHQNSNNSVDWY 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 401 EFFKNAIFSVSIALFGIFIAYCLYKPFYSSKLNLTLLNSFQKWSSKRIRWEKLINFVYNWSYNRGYIDAFFKKSLTESIR 480
Cdd:CHL00025 597 EFLTNAIFSVSIAFFGIFIASFLYGPVYSSLQNLDLINSFVKGGPKRIFLDKIINVIYNWSYNRGYIDAFYTISFIKGIR 676
|
490 500
....*....|....*....|..
gi 193163427 481 KLAKQTNCFDKRIIDGIT*GVG 502
Cdd:CHL00025 677 GLAELTHFFDRRVIDGITNGVG 698
|
|
| Proton_antipo_C |
pfam01010 |
NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a ... |
248-490 |
3.02e-136 |
|
NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a carboxyl terminal extension of pfam00361. It includes subunit 5 from chloroplasts, and bacterial subunit L. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. This family is largely a few TM regions of the F subunit of NADH-Ubiquinone oxidoreductase from plants. The TMs form part of the anti-porter subunit.
Pssm-ID: 366417 [Multi-domain] Cd Length: 244 Bit Score: 393.13 E-value: 3.02e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 248 RIYLL*FEGHLN*YFINYSGKKSSSFYSISLWGKEEDKKLNRNFGLVPLLTMNNTKRASFFANKTYKISNNVRNKT--FI 325
Cdd:pfam01010 1 RIYLLTFEGHLNVHFQNYSGKKNSSFYSISLWGKEGSKLINKNFRTLLLLTMNNNEKVSFFSKKTYRIDGNVRNMTrpFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 326 TVENFGlNTRTFYYPNESDNTILFPMLVLLLFTLFIGAIGIPFNQEGIDFDILSKLLTPSINLLHTNSENFVDWYEFFKN 405
Cdd:pfam01010 81 TITHFD-NKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHKNSNNSVDWYEFVTN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 406 AIFSVSIALFGIFIAYCLYKPFYSSKLNLTLLNSFQKWSSKRIRWEKLINFVYNWSYNRGYIDAFFKKSLTESIRKLAKQ 485
Cdd:pfam01010 160 AIFSVSIAYFGIFIASFLYKPVYSSFQNLDLINSFVKKGPKRIFLDKIINVIYNWSYNRGYIDVFYTTSFTRGIRGLAEL 239
|
....*
gi 193163427 486 TNCFD 490
Cdd:pfam01010 240 THFFD 244
|
|
| PRK07376 |
PRK07376 |
NADH-quinone oxidoreductase subunit L; |
1-497 |
1.53e-134 |
|
NADH-quinone oxidoreductase subunit L;
Pssm-ID: 236005 [Multi-domain] Cd Length: 673 Bit Score: 404.41 E-value: 1.53e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFEIFNNLILNNRVNLLFLT*****L*GGPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARL 80
Cdd:PRK07376 201 GSFDFDGIADRLSELVSSGAVSGWLALLLCILVFLGPMAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARM 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 81 LPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGS 160
Cdd:PRK07376 281 YPVFEQFPAVMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGS 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 161 GSIIHSMEAIVGYSPDKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IACSTAG 240
Cdd:PRK07376 361 GSVIHGMEEVVGHDPVLAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEANPALWFVGFLTAG 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 241 LTAFYMSRIYLL*FEGhln*yfiNYSGkksssfysislwgkeEDKKLnrnfglvplltmnntkRASFFANKTYKISNNVR 320
Cdd:PRK07376 441 MTAFYMFRMYFLTFEG-------EFRG---------------NDKEL----------------QKELLAAADAPGHHEGH 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 321 NKTFITVENFGLNtrtfyyPNESDNTILFPMLVLLLFTLFIGAIGIPFNQEGIDFdilskLLTPSINLLHtnSENFvDWY 400
Cdd:PRK07376 483 HEEHGEHHHHSGS------PHESPWTMTLPLVVLAVPSVLIGLLGTPWNNRFEAF-----LHAPGEALEA--AAHF-EWG 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 401 EFFKNAIFSVSIALFGIFIAYCLYkpfYSSKLNL-TLLNSFQKwsskrirweklinfVYNWSYNRGYIDAFFKKSLTESI 479
Cdd:PRK07376 549 EFLILAGASVGIALIGITLASLMY---LLKKIDPaAIAERFPP--------------LYQFSLNKWYLDDIYEKLFVKGS 611
|
490
....*....|....*...
gi 193163427 480 RKLAKQTNCFDKRIIDGI 497
Cdd:PRK07376 612 RRLARQVLEVDYKVVDGV 629
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
1-502 |
1.35e-108 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 335.20 E-value: 1.35e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFEIFNNLIlnnrvNLLFLT*****L*GGPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARL 80
Cdd:COG1009 190 GTLNFSELLAAAPTIL-----SSPLLTLILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 81 LPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGS 160
Cdd:COG1009 265 SPLFALSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGA 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 161 GSIIHSMEaivgyspdkSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILN---DSLLFSPIFA*IACS 237
Cdd:COG1009 345 GSVIHATG---------TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaalEAGGLGPLLLAVALL 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 238 TAGLTAFYMSRIYLL*Feghln*yfinysgkksssfysislWGKEEDKKLNRnfglvplltmnntkrasffanktykisn 317
Cdd:COG1009 416 GAFLTAFYSFRLFFLVF------------------------FGKPRPKTPKH---------------------------- 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 318 nvrnktfitvenfglntrtfyyPNESDNTILFPMLVLLLFTLFIGAIGIPFNQEGIDfdiLSKLLTPSINLLHTNSENFV 397
Cdd:COG1009 444 ----------------------PHESPWLMTLPLVVLAVLSLVLGLLLPGLLEGLLA---PAAVLGGELHLAHGLLLNAL 498
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 398 dwyeffknaifSVSIALFGIFIAYCLYkpfyssklnltllnsfqkWSSKRIRWEKLINFVYNWSYNRGYIDAFFKKSLTE 477
Cdd:COG1009 499 -----------PLLLSLLGIALGYLLY------------------LKRPLPALAERLKPLYRLLANKWYFDELYDALFVK 549
|
490 500
....*....|....*....|....*
gi 193163427 478 SIRKLAKqTNCFDKRIIDGIT*GVG 502
Cdd:COG1009 550 PVRALAR-FLWFDRYVIDGIVNGLA 573
|
|
| PRK06590 |
PRK06590 |
NADH:ubiquinone oxidoreductase subunit L; Reviewed |
1-502 |
9.85e-106 |
|
NADH:ubiquinone oxidoreductase subunit L; Reviewed
Pssm-ID: 235836 [Multi-domain] Cd Length: 624 Bit Score: 328.27 E-value: 9.85e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQdlfEIFNNLILNNRVNLLFLT*****L*GGPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARL 80
Cdd:PRK06590 194 GSLNYD---EVFAAAPQFFGLGWSALTLICLLLFIGAMGKSAQFPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARM 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 81 LPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGS 160
Cdd:PRK06590 271 SPLFELSPEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGA 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 161 GSIIHSMeaivgyspDKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA-*IACSTA 239
Cdd:PRK06590 351 GSVIHAM--------HHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAAFANGHINLfVAGLVGA 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 240 GLTAFYMSRIYLL*Feghln*yfinysgkksssfysislwgkeedkklnrnfglvplltmnntkrasffanktykisnnv 319
Cdd:PRK06590 423 FLTAFYSFRLIFLVF----------------------------------------------------------------- 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 320 rnktfitvenFGLNTRTFYYPNESDNTILFPMLVLLLFTLFIGAIGIPFnqegidfdiLSKLLTPSINLLHTNSEnfvdW 399
Cdd:PRK06590 438 ----------HGKEKEKIHHPHESPAVMTLPLIVLAVLSVFAGALIVPP---------FLGVLPLTTELAHGEAE----H 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 400 YEFFKNAIFSVSIALFGIFIAYCLYKpfyssklnltllnsFQKWSSKriRWEKLINFVYNWSYNRGYIDAFFKKSLTESI 479
Cdd:PRK06590 495 HLPVWVALLPLVVALAGIALAWLLYL--------------KKPTLPT--SIAAPGRFLYTLLRNKYYFDELYEKVFVKPG 558
|
490 500
....*....|....*....|...
gi 193163427 480 RKLAKqtnCFDKRIIDGIT*GVG 502
Cdd:PRK06590 559 LALAR---LLWKDGDDGIIDGLV 578
|
|
| NDH_I_L |
TIGR01974 |
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ... |
1-502 |
3.02e-92 |
|
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273905 [Multi-domain] Cd Length: 609 Bit Score: 293.03 E-value: 3.02e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFEIFNNLILNnrvnllFLT*****L*GGPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARL 80
Cdd:TIGR01974 193 GTLNFQEVFALAPGAFFS------ALTLICLLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVART 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 81 LPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGS 160
Cdd:TIGR01974 267 SPLFELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGA 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 161 GSIIHSMEaivgyspdKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEIL-------NDSLLFspiFA* 233
Cdd:TIGR01974 347 GSVIHAMH--------HEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILeaafasgTHSFLF---VAG 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 234 IACstAGLTAFYMSRIYLL*FEGhln*yfinysgkksssfysislwgkeedkklnrnfglvplltmnnTKRASFFANkty 313
Cdd:TIGR01974 416 LIG--AFLTAFYSFRLIFMVFHG---------------------------------------------KERHEADAH--- 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 314 kisnnvrnktfitvenfglntrtfyyPNESDNTILFPMLVLLLFTLFIGAIGIPFnqegidFDILSklltPSINLLHTNS 393
Cdd:TIGR01974 446 --------------------------PHESPLVMLLPLIVLAVGSVFAGFFIVPL------FEFLK----GVLPTSAEPA 489
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 394 ENFVDWYEFFKNAIFSVSIAlfGIFIAYCLYkpfyssKLNLTLLNSFqkwsskrirwEKLINFVYNWSYNRGYIDAFFKK 473
Cdd:TIGR01974 490 LEHHHVPALEIWSPTAVAIL--GILLAYLLY------LGNPTLPAKI----------AQRHSGLYRLLLNKWYFDELYDK 551
|
490 500 510
....*....|....*....|....*....|
gi 193163427 474 SLTESIRKLAKQTNCF-DKRIIDGIT*GVG 502
Cdd:TIGR01974 552 VFVKPYLFLGKLLWKDpDDKIIDGFGPGIA 581
|
|
| ND5 |
MTH00020 |
NADH dehydrogenase subunit 5; Reviewed |
1-254 |
2.44e-64 |
|
NADH dehydrogenase subunit 5; Reviewed
Pssm-ID: 214400 [Multi-domain] Cd Length: 610 Bit Score: 219.56 E-value: 2.44e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFeifnNLILNNRVNLLFLt*****L*GGPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARL 80
Cdd:MTH00020 190 GSLDFSSVF----NMVVSAPSSDITL--ICLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRS 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 81 LPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGS 160
Cdd:MTH00020 264 SPLFEQAPLALIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSA 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 161 GSIIHSMeaivgyspDKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLL-FSPIFA*-IACST 238
Cdd:MTH00020 344 GSVIHAL--------SDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGqYYLIFAYwLGCFS 415
|
250
....*....|....*.
gi 193163427 239 AGLTAFYMSRIYLL*F 254
Cdd:MTH00020 416 ALLTAFYSIRLIYLTF 431
|
|
| ND5 |
MTH00210 |
NADH dehydrogenase subunit 5; Provisional |
1-274 |
1.26e-61 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177253 [Multi-domain] Cd Length: 616 Bit Score: 212.18 E-value: 1.26e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFEIFNNLILNNRVNLLFLt*****L*GGPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARL 80
Cdd:MTH00210 190 GTLEFSTISSLLVTNINKESLTIICL-----LLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRS 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 81 LPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGS 160
Cdd:MTH00210 265 GPLFEGSPLALTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSA 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 161 GSIIHSMeaivgyspDKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILndSLLFSP---IFA*-IAC 236
Cdd:MTH00210 345 GSVIHAV--------SDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLIL--ELTYDKyyiAFAYwLGS 414
|
250 260 270
....*....|....*....|....*....|....*...
gi 193163427 237 STAGLTAFYMSRIYLL*FEGHLN*YFINYSGKKSSSFY 274
Cdd:MTH00210 415 FSALLTAFYSIRLIYLTFITNTNSKKEVFIGVHESSWN 452
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
1-240 |
4.25e-60 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 199.46 E-value: 4.25e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFEIFNNLILNNRVNLLFLt*****L*GGPIAKSAQFPLHVW*PDA-MEGPTPISALIhAATMVAAGIFLVAR 79
Cdd:pfam00361 61 GTLSFDELSKALTGGLNSSGLLLLFL-----LILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIR 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 80 LLPLF-IVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG---SYRSALFHLITHAYSKAL 155
Cdd:pfam00361 135 RSLLYlPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGtiyGIQAAIFHLLTHGLFSAG 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 156 LFLGSGSIIHSMEaivgyspdKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IA 235
Cdd:pfam00361 215 LFLCAGSVIYRRV--------HTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
|
....*
gi 193163427 236 CSTAG 240
Cdd:pfam00361 287 GVVGS 291
|
|
| ND5 |
MTH00211 |
NADH dehydrogenase subunit 5; Provisional |
10-257 |
3.99e-56 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214459 [Multi-domain] Cd Length: 597 Bit Score: 197.10 E-value: 3.99e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 10 EIFNNLILNNRVNLLFLt*****L*GGPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPS 89
Cdd:MTH00211 192 EISQLFILNLDLTLFLL-----GLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSPLFQNNQL 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 90 IMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMea 169
Cdd:MTH00211 267 ILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGL-- 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 170 ivgyspDKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEIL---NDSLL--FSPIFA*IAcstAGLTAF 244
Cdd:MTH00211 345 ------NNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILesmNGSYLnaWALLLTLLA---TSLTAA 415
|
250
....*....|...
gi 193163427 245 YMSRIYLL*FEGH 257
Cdd:MTH00211 416 YSFRLIFLSLGGY 428
|
|
| ND5 |
MTH00004 |
NADH dehydrogenase subunit 5; Validated |
40-252 |
1.15e-54 |
|
NADH dehydrogenase subunit 5; Validated
Pssm-ID: 214398 [Multi-domain] Cd Length: 602 Bit Score: 193.07 E-value: 1.15e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGL 119
Cdd:MTH00004 222 KSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRTHPLLQNNQTALTICLCLGALTTLFAATCALTQNDIKKII 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 120 AYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMeaivgyspDKSQNMILMGGLTKHVPITKTAFL 199
Cdd:MTH00004 302 AFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNL--------NNEQDIRKMGGLQKTLPITSSCLT 373
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 193163427 200 VGTLSLCGIPPLACFWSKD---EILNDSLLFSPIFA*IACSTAgLTAFYMSRIYLL 252
Cdd:MTH00004 374 IGNLALMGTPFLSGFYSKDtiiETLNTSYLNAWALLLTLLATS-FTAAYSLRMILL 428
|
|
| ND5 |
MTH00208 |
NADH dehydrogenase subunit 5; Provisional |
38-254 |
3.70e-54 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177251 [Multi-domain] Cd Length: 628 Bit Score: 192.49 E-value: 3.70e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 38 IAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKR 117
Cdd:MTH00208 247 AGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLIRTSPLISNSPWFLSLCLILGSLTALFAASTAISQHDIKK 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 118 GLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMeaivgyspDKSQNMILMGGLTKHVPITKTA 197
Cdd:MTH00208 327 IIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSL--------NNEQDLRKMGGLSFLLPVTSSC 398
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 193163427 198 FLVGTLSLCGIPPLACFWSKDEIL-----NDSLLFSPIFA*IACStagLTAFYMSRIYLL*F 254
Cdd:MTH00208 399 IILGSLALMGTPFLAGFYSKDLILeaglaSISNLLSIILALIATL---LTAVYSFRIIFFCF 457
|
|
| ND5 |
MTH00032 |
NADH dehydrogenase subunit 5; Provisional |
36-221 |
1.02e-51 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214407 [Multi-domain] Cd Length: 669 Bit Score: 186.32 E-value: 1.02e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 36 GPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDI 115
Cdd:MTH00032 234 GCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITIFGALTAFFAATVGLVQNDL 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 116 KRGLAYSTMSQLGYMMLALGM-GSYRSALFHLITHAYSKALLFLGSGSIIHSMEAivgyspdKSQNMILMGGLTKHVPIT 194
Cdd:MTH00032 314 KKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTV-------DEQDMRKMGGLIHSIPFT 386
|
170 180
....*....|....*....|....*..
gi 193163427 195 KTAFLVGTLSLCGIPPLACFWSKDEIL 221
Cdd:MTH00032 387 YTMMLIGSFSIMGLPYLTGFYSKDLIL 413
|
|
| ND5 |
MTH00066 |
NADH dehydrogenase subunit 5; Provisional |
1-249 |
1.07e-50 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214416 [Multi-domain] Cd Length: 598 Bit Score: 182.42 E-value: 1.07e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFEIFNNlilnnrvNLLFLT*****L*GgpiaKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARL 80
Cdd:MTH00066 192 NSWELQQIFLLNDN-------STLPLLGLILAAAG----KSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRF 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 81 LPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGS 160
Cdd:MTH00066 261 HPLLENNQTALTICLCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCS 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 161 GSIIHSMeaivgyspDKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEI---LNDSLL--FSPIFA*IA 235
Cdd:MTH00066 341 GSIIHSL--------NDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIieaMNTSNLnsWALILTLIA 412
|
250
....*....|....
gi 193163427 236 CStagLTAFYMSRI 249
Cdd:MTH00066 413 TS---FTAVYSFRI 423
|
|
| ND5 |
MTH00108 |
NADH dehydrogenase subunit 5; Provisional |
2-249 |
8.08e-50 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177170 [Multi-domain] Cd Length: 602 Bit Score: 180.05 E-value: 8.08e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 2 SFEFQDLFeifnnlILNNRVNLLflt*****L*GGPIA---KSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVA 78
Cdd:MTH00108 195 SWDLQQIF------MLNPNNSNL-------PLMGLLLAatgKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 79 RLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFL 158
Cdd:MTH00108 262 RFHPLMENNKTIQTLTLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFM 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 159 GSGSIIHSMeaivgyspDKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKD---EILNDS------LLFSp 229
Cdd:MTH00108 342 CSGSIIHNL--------NDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDliiEAANTSytnawaLLIT- 412
|
250 260
....*....|....*....|
gi 193163427 230 ifa*IACStagLTAFYMSRI 249
Cdd:MTH00108 413 ---LIATS---LTAAYSTRI 426
|
|
| ND5 |
MTH00151 |
NADH dehydrogenase subunit 5; Provisional |
40-274 |
1.20e-49 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214436 [Multi-domain] Cd Length: 565 Bit Score: 178.88 E-value: 1.20e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGL 119
Cdd:MTH00151 189 KSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFFPFLSSSSGFSSFLLFISLLTLLMAGISACYENDLKKII 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 120 AYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMeaivgyspDKSQNMILMGGLTKHVPITKTAFL 199
Cdd:MTH00151 269 ALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSS--------SGTQDIRLLGSLFLSLPLTSGCLN 340
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 193163427 200 VGTLSLCGIPPLACFWSKDEILnDSLLFSPI----FA*IACSTaGLTAFYMSRIYLL*FEGHLN*YFinYSGKKSSSFY 274
Cdd:MTH00151 341 ISSLSLCGAPFLSGFYSKDLIL-ESSLMSPTsllmVLLMFVGV-GLTALYSARLSFCLVWGSMKSSS--LSSKSDEDFY 415
|
|
| ND5 |
MTH00137 |
NADH dehydrogenase subunit 5; Provisional |
40-226 |
1.42e-49 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214428 [Multi-domain] Cd Length: 611 Bit Score: 179.26 E-value: 1.42e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGL 119
Cdd:MTH00137 228 KSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLSPLMENNQTALTTCLCLGALTTLFTATCALTQNDIKKIV 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 120 AYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMeaivgyspDKSQNMILMGGLTKHVPITKTAFL 199
Cdd:MTH00137 308 AFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSL--------NDEQDIRKMGGLHHLTPFTSSCLT 379
|
170 180 190
....*....|....*....|....*....|
gi 193163427 200 VGTLSLCGIPPLACFWSKDEI---LNDSLL 226
Cdd:MTH00137 380 IGSLALTGTPFLAGFFSKDAIieaLNTSHL 409
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
39-250 |
1.83e-47 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 169.94 E-value: 1.83e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 39 AKSAQFPLHVW*PDAM-EGPTPISALIHAAtMVAAGIFLVARLLPLFI---VIPSIMYIISLIGIITVLLGATLALAQKD 114
Cdd:COG0651 217 IKAALFPLHFWLPDAYpAAPSPVSALLSGL-LTKVGVYAILRVLTLLFgadPALFLGTLLLVLGLLTMLVGALGALAQRD 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 115 IKRGLAYSTMSQLGYMMLALGMGSYRS---ALFHLITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMILMGGLTKHV 191
Cdd:COG0651 296 LKRLLAYSSVSQIGYILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIERAT---------GTRDLDKLGGLGKRM 366
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 193163427 192 PITKTAFLVGTLSLCGIPPLACFWSKDEILnDSLLFS--PIFA*IACSTAGLTAFYMSRIY 250
Cdd:COG0651 367 PLTAAAFLIGALALAGLPPLSGFVSKWLLL-QAALEAgaWLLAAVLLLSSLLTLAYFVRIF 426
|
|
| PRK07390 |
PRK07390 |
NAD(P)H-quinone oxidoreductase subunit F; Validated |
1-256 |
3.62e-46 |
|
NAD(P)H-quinone oxidoreductase subunit F; Validated
Pssm-ID: 236008 [Multi-domain] Cd Length: 613 Bit Score: 170.09 E-value: 3.62e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFEifnnLILNNRVNLLFLT*****L*GGPIAKSAQFPLHVW*PDAMEGPTPISALIHAAtMVAAGIFLVARL 80
Cdd:PRK07390 199 GTLNFSDLAA----WAATANLDPLTATLLGLALIAGPTGKCAQFPLHLWLDEAMEGPNPASILRNSV-VVATGAWVLIKL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 81 LPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGS 160
Cdd:PRK07390 274 QPVLALSPVALTVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSV 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 161 GSIIHSmeaivgyspDKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IACSTAG 240
Cdd:PRK07390 354 GSIILT---------TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWALLRLADGLWAVSPWLVGVLLLVNA 424
|
250
....*....|....*.
gi 193163427 241 LTAFYMSRIYLL*FEG 256
Cdd:PRK07390 425 LTAFNLTRVFRLVFLG 440
|
|
| ND5 |
MTH00207 |
NADH dehydrogenase subunit 5; Provisional |
40-251 |
1.49e-45 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 164753 [Multi-domain] Cd Length: 572 Bit Score: 167.63 E-value: 1.49e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGL 119
Cdd:MTH00207 192 KSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYPFLSSTYWFNPALLLTASLTMLMAGLSAMTECDMKKII 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 120 AYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMEaivgyspdKSQNMILMGGLTKHVPITKTAFL 199
Cdd:MTH00207 272 ALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHH--------HSQDLRTMGNLTNQMPLTTSCLL 343
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 193163427 200 VGTLSLCGIPPLACFWSKDEILNDSLLF---SPIFA*IACSTaGLTAFYMSRIYL 251
Cdd:MTH00207 344 IANLALCGSPFLSGFYSKDLILESSLFYphnSLMILMIFLAT-ALTAAYSTRFTL 397
|
|
| ND5 |
MTH00209 |
NADH dehydrogenase subunit 5; Provisional |
38-271 |
3.66e-43 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177252 [Multi-domain] Cd Length: 564 Bit Score: 160.97 E-value: 3.66e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 38 IAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKR 117
Cdd:MTH00209 186 MTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFFPSLFSSPFFSMSLLLLGSLTTLMASMSANVESDLKK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 118 GLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMEaivgyspdKSQNMILMGGLTKHVPITKTA 197
Cdd:MTH00209 266 IIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHG--------HSQDIRMVGNLWYQMPITSIC 337
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 193163427 198 FLVGTLSLCGIPPLACFWSKDEILnDSLLFS--PIFA*IACSTA-GLTAFYMSRIYLL*FEGHLN*YFINYSGKKSS 271
Cdd:MTH00209 338 LNIANLSLCGIPFLAGFYSKDLIL-ESMLESnmPIMTLILMFLStSLTAAYSMRLSYFSLWGPNSSKSLNSSFDQNK 413
|
|
| ND5 |
MTH00165 |
NADH dehydrogenase subunit 5; Provisional |
1-274 |
6.19e-43 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214444 [Multi-domain] Cd Length: 573 Bit Score: 160.31 E-value: 6.19e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFEIFNNLILNNRVNLLFLT*****l*gGPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARL 80
Cdd:MTH00165 162 GSWNFIFYLDFMKNSFEMLLIGLLIML--------AAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRF 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 81 LPLFIvIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGS 160
Cdd:MTH00165 234 NNLLF-SSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 161 GSIIHSMeaivgyspDKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILnDSLLFSP----IFA*IAC 236
Cdd:MTH00165 313 GSIIHNM--------SNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLIL-EMVSMSNlnffIFFLFFF 383
|
250 260 270
....*....|....*....|....*....|....*...
gi 193163427 237 STaGLTAFYMSRIYLL*FEGHLN*YFINYSGKKSSSFY 274
Cdd:MTH00165 384 ST-GLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFML 420
|
|
| PRK06525 |
PRK06525 |
hydrogenase 4 subunit D; Validated |
39-221 |
1.00e-42 |
|
hydrogenase 4 subunit D; Validated
Pssm-ID: 180606 [Multi-domain] Cd Length: 479 Bit Score: 158.21 E-value: 1.00e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 39 AKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIP-SIMYIISLIGIITVLLGATLALAQKDIKR 117
Cdd:PRK06525 219 GKSAQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPIPhVIGYVGAVMAIVTLLYGFLMYLPQQDMKR 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 118 GLAYSTMSQLGYMMLALGMGSYRS------ALFHLITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMILMGGLTKHV 191
Cdd:PRK06525 299 LLAYSTITQLGYMFFGLSLAILGSrlalegSIAYIFNHAFAKSLFFLVAGALSYSC---------GTRLLPRLRGVLKKL 369
|
170 180 190
....*....|....*....|....*....|
gi 193163427 192 PITKTAFLVGTLSLCGIPPLACFWSKDEIL 221
Cdd:PRK06525 370 PLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
|
|
| PRK12648 |
PRK12648 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
40-235 |
1.80e-42 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237157 [Multi-domain] Cd Length: 948 Bit Score: 161.90 E-value: 1.80e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGL 119
Cdd:PRK12648 220 KSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLWPVLAGTEEWFWIVGGAGLITLLLGAYFALFQHDLKGLL 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 120 AYSTMSQLGYMMLALGMGSYRS---ALFHLITHAYSKALLFLGSGSIIHsmEAivgyspdKSQNMILMGGLTKHVPITKT 196
Cdd:PRK12648 300 AYSTISHLGLITLLLGLGSPLAavaAIFHIINHATFKASLFMAAGIIDH--ET-------GTRDMRRLSGLRRLMPITAT 370
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 193163427 197 AFLVGTLSLCGIPPLACFWSK----DEILNDSLLFS-----PIFA*IA 235
Cdd:PRK12648 371 LAMVAAAAMAGVPLLNGFLSKemffAETLDTHLLGSldwllPVAATLA 418
|
|
| PRK12645 |
PRK12645 |
monovalent cation/H+ antiporter subunit A; Reviewed |
36-217 |
2.15e-42 |
|
monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237155 [Multi-domain] Cd Length: 800 Bit Score: 161.25 E-value: 2.15e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 36 GPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDI 115
Cdd:PRK12645 219 GAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARFTPIFAGSQVWFWTVTLVGLITLFWGSLNAVKQTDL 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 116 KRGLAYSTMSQLGYMMLALGMGS----------------YRSALFHLITHAYSKALLFLGSGSIIHSmeaiVGyspdkSQ 179
Cdd:PRK12645 299 KGILAFSTVSQLGLIMSLLGIGAaslhyqgddskiyaaaITAAIFHLINHATFKGSLFMIVGIVDHE----TG-----TR 369
|
170 180 190
....*....|....*....|....*....|....*...
gi 193163427 180 NMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSK 217
Cdd:PRK12645 370 DIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSK 407
|
|
| PRK12647 |
PRK12647 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
1-246 |
2.85e-42 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237156 [Multi-domain] Cd Length: 761 Bit Score: 160.47 E-value: 2.85e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFEiFNNLIlnnRVNLLFLT*****L*GGPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARL 80
Cdd:PRK12647 174 GTYSLSELLA-SGDVI---REHPLYLAILLLVL-GGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 81 LPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLF 157
Cdd:PRK12647 249 NPVLGGTPLWQTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSelaIKAAVLFLVAHSLYKGALF 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 158 LGSGSIIHSmeaiVGyspdkSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILnDSLLFSPIFA*IACS 237
Cdd:PRK12647 329 MVAGIIDHE----TG-----TRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIY-EALLEAPLWSLILTV 398
|
....*....
gi 193163427 238 TAGLTAFYM 246
Cdd:PRK12647 399 AAVLGNALM 407
|
|
| 2a6301s01 |
TIGR00940 |
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ... |
1-218 |
1.37e-40 |
|
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273353 [Multi-domain] Cd Length: 793 Bit Score: 155.77 E-value: 1.37e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFEIFNNLilnnRVNLLFLT*****L*GGpIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARL 80
Cdd:TIGR00940 185 GSFSIDAVIASADAI----RNSPLFGTAMVLVLLGA-FTKSAQFPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLARF 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 81 LPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS----------------YRSALF 144
Cdd:TIGR00940 260 TPVFAGTEAWFWIVGLAGLITLLWGSYFAIFQQDLKGILAFSTISQLGLIMVLLGLGSpsyhyqgddskiyalaAVAAVF 339
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 193163427 145 HLITHAYSKALLFLGSGSIIHSmeaivgyspDKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKD 218
Cdd:TIGR00940 340 HLINHATFKGSLFMAAGIIDHE---------TGTRDIRKLGGLFHIMPITFTLAMIASAAMAGVPPFNGFLSKE 404
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
40-256 |
2.45e-40 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 152.43 E-value: 2.45e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAM-EGPTPISALIhAATMVAAGIFLVARLLPLFIVIPS--------IMYIISLIGIITVLLGATLAL 110
Cdd:PRK12667 236 KAAIFPNHFWLPDAHpAAPSPVSAML-SGLVVNVGAYAIIRFLYTIFGISPslidfraaLSPILIILGAVSAIIGALMMV 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 111 AQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMILMGGL 187
Cdd:PRK12667 315 VQKDVKRLLAYSTISHMGYIFMGIGIGTqlgLAAALFHIINHAIAKSLLFLASGVFIHAA---------GTRDIDELAGL 385
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 193163427 188 TKHVPITKTAFLVGTLSLCGIPPLACFWSKdEILNDSLLFS--PIFA*IACSTAGLTAFYMSRIYLL*FEG 256
Cdd:PRK12667 386 GRKMPIASFAFLIGALSLVGIPPLNGFFSK-LLLFNALLESgfYLPALVLLIASAISLVGYFRAWYSLFFG 455
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
38-249 |
6.48e-39 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 147.72 E-value: 6.48e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 38 IAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLL-----PLFIVIPSIMYIISLIGIITVLLGATLALAQ 112
Cdd:PRK08375 213 ALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYftvfgGDFRFALGLGWLLAVLALLSMLVGSLAALGQ 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 113 KDIKRGLAYSTMSQLGYMMLALGMGSYRS---ALFHLITHAYSKALLFLGSGSIihsmEAIVGyspdkSQNMILMGGLTK 189
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLAlaaGLLHLLHHALMKGALFLAAGAI----EVTYG-----TRRLSELSGLGR 363
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 193163427 190 HVPITKTAFLVGTLSLCGIPPLACFWSKDEIL---NDSLLFSPIFA*IACSTagLTAFYMSRI 249
Cdd:PRK08375 364 RMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVvgaVEAGQWLVLAVLLASSL--LALLYFLRI 424
|
|
| PRK12646 |
PRK12646 |
DUF4040 family protein; |
36-225 |
2.86e-38 |
|
DUF4040 family protein;
Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 149.13 E-value: 2.86e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 36 GPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDI 115
Cdd:PRK12646 219 GAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSNMYIYIVTFVGLITMLFGSITALKQWDL 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 116 KRGLAYSTMSQLGYMMLALGMG-----------------SYRSALFHLITHAYSKALLFLGSGSIIHSMeaivgyspdKS 178
Cdd:PRK12646 299 KGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasiyvfVLFAALFHLMNHAIFKCALFMGVGIIDHEA---------GT 369
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 193163427 179 QNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKdEILNDSL 225
Cdd:PRK12646 370 RDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSK-EMFLDAL 415
|
|
| PRK12644 |
PRK12644 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
36-248 |
3.50e-37 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237154 [Multi-domain] Cd Length: 965 Bit Score: 146.22 E-value: 3.50e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 36 GPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDI 115
Cdd:PRK12644 212 GALSKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFADVPVWRPTVLVLGLATMLLGGWRALRQHDL 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 116 KRGLAYSTMSQLGYMMLALGMGSYRSALFHL---ITHAYSKALLFLGSGSIIHSmeaiVGyspdkSQNMILMGGLTKHVP 192
Cdd:PRK12644 292 KLILAYGTVSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAALFLVVGIIDHS----TG-----TRDIRKLSGLGRRQP 362
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 193163427 193 ITKTAFLVGTLSLCGIPPLACFWSK----DEILNDSLLFSPIFA*IACSTAG--LTAFYMSR 248
Cdd:PRK12644 363 VLAVVAALAAASMAGLPPLLGFVAKeaalEAVLHDGALGPAGPVVLAGIVLGsiLTVAYSLR 424
|
|
| PRK12649 |
PRK12649 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
7-225 |
3.53e-37 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 183649 [Multi-domain] Cd Length: 789 Bit Score: 145.74 E-value: 3.53e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 7 DLFEIFNN--LILNNRVNLLFLT*****L*GGPiAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLF 84
Cdd:PRK12649 193 DIATILQDseLIENIKGHPLFLITLILIFIGAA-AKSAQGPFYIWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIF 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 85 IVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYR-------SALFHLITHAYSKALLF 157
Cdd:PRK12649 272 SGTEAWFILVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYHepglgvaAATFHLLNHATFKACLF 351
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 193163427 158 LGSGSIIHsmEAivgyspdKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSL 225
Cdd:PRK12649 352 LVAGIVAH--EA-------ATRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYETSV 410
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
40-254 |
4.78e-37 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 145.57 E-value: 4.78e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGL 119
Cdd:PRK12650 221 KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLT 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 120 AYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGSGSIIHsmEAivgyspdKSQNMILMGGLTKHVPITKT 196
Cdd:PRK12650 301 AYSTVSQLGWIVATIGVGTpfaLTAAVVHTLAHALFKSSLFMLIGVVDH--QA-------GTRDIRRLGSLWRRMPFTFV 371
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 193163427 197 AFLVGTLSLCGIPPLACFWSKDEILnDSLLFSPIFA*---IACSTAGLTAF----YMSRIYLL*F 254
Cdd:PRK12650 372 SVTIAALSMAAVPPLFGFVSKEGML-TAFLEAPGGNAgvvLLLVGAALGAVftfaYSARLVLGAF 435
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-256 |
1.31e-33 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 133.30 E-value: 1.31e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 33 L*GGPIAKSAQFPLHVW*PDAM-EGPTPISALIHAATmvAAGIFLVAR-LLPLF---IVIPSIMYIISLIGIITVLLGAT 107
Cdd:PRK08376 226 FIAGLAMKSGAVPVHMWLPDAYpAAPSSISAMLLVIK--QAGLYALARvLFSIYgpaINLATVGWVIIILGCLTMFVGVA 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 108 LALAQKDIKRGLAYSTMSQLGYMMLALGMG--SYRS-------------ALFHLITHAYSKALLFLGSGSIIHSMeaivg 172
Cdd:PRK08376 304 MAVVQKDVKRLLAYHSVSQIGYMLLGLGVGlaALGDpamasygeialagGIYHIVNHALYKALLFLTAGAVIYET----- 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 173 yspdKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IACSTAGLTAFYMSRIYLL 252
Cdd:PRK08376 379 ----GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPILGVIAMIGSVLTLASFVKVFHT 454
|
....
gi 193163427 253 *FEG 256
Cdd:PRK08376 455 AFFG 458
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
40-259 |
2.26e-33 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 132.13 E-value: 2.26e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDA-MEGPTPISAlIHAATMVAAGIFLVARL-LPLFiviP----SIMYIISLIGIITVLLGATLALAQK 113
Cdd:COG1008 222 KVPMFPFHTWLPDAhVEAPTAGSV-LLAGVLLKMGGYGLLRFaLPLF---PeasaYFAPLLAALGVIGIIYGALVALAQT 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 114 DIKRGLAYSTMSQLGYMMLALGMGSYRS---ALFHLITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMILMGGLTKH 190
Cdd:COG1008 298 DLKRLIAYSSVSHMGFVLLGIFALNPLGlqgAVLQMVSHGLITAALFLLVGVLYDRT---------HTRDIADLGGLAKR 368
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 193163427 191 VPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IACSTAGLTAFYMSRIYLL*FEGHLN 259
Cdd:COG1008 369 MPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLK 437
|
|
| PRK06521 |
PRK06521 |
hydrogenase 4 subunit B; Validated |
39-256 |
1.48e-30 |
|
hydrogenase 4 subunit B; Validated
Pssm-ID: 235820 [Multi-domain] Cd Length: 667 Bit Score: 125.77 E-value: 1.48e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 39 AKSAQFPLHVW*PDAM-EGPTPISALIhAATMVAAGIFLVARLLPLFIVIPSIM--YIISLIGIITVLLGATLALAQKDI 115
Cdd:PRK06521 222 AKAGLVPLHVWLPRAHpAAPSHVSALM-SGVMLKVAIYGILRVVFDLLGAPGWWwgVLVLALGAISAVLGVLYALAEHDL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 116 KRGLAYSTMSQLGYMMLALGMG--------------SYRSALFHLITHAYSKALLFLGSGSIIHSMEaivgyspdkSQNM 181
Cdd:PRK06521 301 KRLLAYSTIENIGIIFVGLGLAmvfiaygmpllaalALTAALYHLLNHALFKSLLFLGAGAVLHATG---------TRDM 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 182 ILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILNdSLLFS------------PIFA*IACSTAGLTAFYMSRI 249
Cdd:PRK06521 372 EKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQ-SLLSSpglpqwglklavPIAAAMLALTAALAAMCFVKF 450
|
....*..
gi 193163427 250 YLL*FEG 256
Cdd:PRK06521 451 YGITFLG 457
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
1-217 |
8.27e-30 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 123.18 E-value: 8.27e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFEIFNNLILNNRVNLLFLt*****L*GGPIAKSAQFPLHVW*PDAM-EGPTPISALIHAA--TMVAAGIFLV 77
Cdd:PRK08668 175 GTFDFADISQGLINDTSTGFALIVFL-----FLLAFGVAKAGIFPLHVWAPDAYsEAPQSFSAVLSGQlsKLGAYGFLLV 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 78 ARLLP---------LFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG---SYRSALFH 145
Cdd:PRK08668 250 LYVLPgtklfsefgTYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGtslGFAGGLFH 329
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 193163427 146 LITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSK 217
Cdd:PRK08668 330 VFNHALFKGLFFLIFAAVIYRT---------GTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASK 392
|
|
| PRK08377 |
PRK08377 |
NADH dehydrogenase subunit N; Validated |
43-221 |
8.81e-28 |
|
NADH dehydrogenase subunit N; Validated
Pssm-ID: 181406 [Multi-domain] Cd Length: 494 Bit Score: 116.02 E-value: 8.81e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 43 QFPLHVW*PDAMEG-PTPISALIhAATMVAAGIFLVARLLPLFIVIP---SIMYIISLIGIITVLLGATLALAQKDIKRG 118
Cdd:PRK08377 222 LFPLNAWAPDAYQAaPHPITVMF-SAFVVKAGLYAMARILYLMQNANgwsSVLKLVIIMATLTVFFAELSALRQKNVKRM 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 119 LAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMILMGGLTKHVPITK 195
Cdd:PRK08377 301 IAYSSIGQVGMIALALALGTqagVDAGVFHMINHAIVKALLFLAVGYVGITL---------GGTEIEKFEGLGKRMPLTA 371
|
170 180
....*....|....*....|....*.
gi 193163427 196 TAFLVGTLSLCGIPPLACFWSKDEIL 221
Cdd:PRK08377 372 LALTIGALSTVGIPLFNVFWSKFRII 397
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
38-252 |
2.80e-27 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 114.53 E-value: 2.80e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 38 IAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLpLFIVIPSIMYII-------SLIGIITVLLGATLAL 110
Cdd:PRK06589 221 IAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKIL-LYIFGLSYLQRIfaefnwlIFIPIVSIFYSSLKAL 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 111 AQKDIKRGLAYSTMSQLGYMMLALGM---GSYRSALFHLITHAYSKALLFLGSGSIihsmeaivgYSPDKSQNMILMGGL 187
Cdd:PRK06589 300 KTDNIKKILAYSTISQLSLALLSAFIltpKALGAAILHLVSHSFAKICLFYSMGSI---------YSLKKEDQVDKLHGT 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 193163427 188 TKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IACSTAGLTAFYMSRIYLL 252
Cdd:PRK06589 371 SKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVVIASSILSALYLL 435
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
7-217 |
5.41e-26 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 110.59 E-value: 5.41e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 7 DLFEIFNNLILNNRVNLLFLT*****L*GgpIA-KSAQFPLHVW*PDAMEG-PTPISALIHAATMVAAgIFLVARLL--P 82
Cdd:COG1007 184 NLAGIAAALAAGGANSPLLLLGLVLVLAG--LAfKLSAVPFHMWTPDVYEGaPTPVTAFLATAPKIAA-FAALLRLLveA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 83 LFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLg 159
Cdd:COG1007 261 FPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTplgVSAALFYLLAYLFMNLGAFA- 339
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 193163427 160 sgsIIhsmeAIVGYSPDKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSK 217
Cdd:COG1007 340 ---VI----LLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
44-217 |
4.93e-25 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 107.60 E-value: 4.93e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 44 FPLHVW*PDAMEG-PTPISALIHAATMVAAgIFLVARLLPLFI--VIPSIMYIISLIGIITVLLGATLALAQKDIKRGLA 120
Cdd:PRK05777 221 VPFHMWTPDVYEGaPTPVTAFLATAPKIAA-FAVLLRLLVVAFggLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLA 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 121 YSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKallfLGSGSIIHSMEAIVGYSPDKSQnmilMGGLTKHVPITKTA 197
Cdd:PRK05777 300 YSSIAHAGYLLVGLAAGTaegYSAVLFYLLAYLFMT----LGAFGVISLLRRKGGEAESISD----FAGLSKRSPLLAAV 371
|
170 180
....*....|....*....|
gi 193163427 198 FLVGTLSLCGIPPLACFWSK 217
Cdd:PRK05777 372 MTIFMLSLAGIPPTAGFWGK 391
|
|
| PRK08168 |
PRK08168 |
NADH-quinone oxidoreductase subunit L; |
38-164 |
9.66e-25 |
|
NADH-quinone oxidoreductase subunit L;
Pssm-ID: 236171 [Multi-domain] Cd Length: 516 Bit Score: 107.09 E-value: 9.66e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 38 IAKSAQFPLHVW*PDAMEGPTPISALIHAAtMVAAGIFLVARLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKR 117
Cdd:PRK08168 211 ILKTAQLPVHGWLIQVMEAPTPVSALLHAG-VVNLGGFVLIRFAPLLEQAPPARWLLVLVGLATAVLAGLVMLTRISIKV 289
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 193163427 118 GLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSII 164
Cdd:PRK08168 290 RLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFLSASEAV 336
|
|
| PRK07234 |
PRK07234 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-256 |
1.98e-24 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235978 [Multi-domain] Cd Length: 470 Bit Score: 105.80 E-value: 1.98e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 33 L*GGPIAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLplfIVIPSIMYIISLIGIITVLLGATLALAQ 112
Cdd:PRK07234 190 IALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCA---LDVPGLDLIVRIFGVGTALLGVLFALLE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 113 KDIKRGLAYSTMSQLGYMMLALGMGsyrsALFHLiTHAYSKALLFLGSGSIihsmeaivgYSPDKSQNMILMGGLTKHVP 192
Cdd:PRK07234 267 KDLKRMLAFSTISQLGFILAAPLVG----GLYAL-AHGLVKSTLFLCAGAL---------PSRNFTELISQMLGIGKWIP 332
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 193163427 193 ITktaflVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IACStagLTAFYMSRIYLL*FEG 256
Cdd:PRK07234 333 LT-----MASFSIAGFPLLAGFVSKVLTLKNLLPWQAIALNLAAV---GTAASFWKFIFLPFSA 388
|
|
| ND5 |
MTH00095 |
NADH dehydrogenase subunit 5; Provisional |
40-278 |
9.82e-24 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177158 [Multi-domain] Cd Length: 527 Bit Score: 104.23 E-value: 9.82e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIpSIMYIISLIGIITVLLGATLALAQKDIKRGL 119
Cdd:MTH00095 177 KSAQFPFSSWLPKAMSAPTPVSSLVHSSTLVTAGLILLMNFSYLILNM-NVMKIMLLIGLFTMFFSSLSALVEEDMKKVV 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 120 AYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMEAivgyspdkSQNMILMGGLTKHVPITKTAFL 199
Cdd:MTH00095 256 ALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFG--------QQDGRNYSNNGNLPMFIQLQLL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 200 VGTLSLCGIPPLACFWSKDEILNDSLL--FSPIFA*IACSTAGLTAFYMSRIYLL*FeghLN*YFINYSGKKSSSFYSIS 277
Cdd:MTH00095 328 VTLFCLCGLMFTSGMVSKELILELFFFnnYMIFFSLMFFFSVFLTFGYSYRLWKSFF---LSFSKVVNVYSSSVLMNFLS 404
|
.
gi 193163427 278 L 278
Cdd:MTH00095 405 L 405
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
44-259 |
1.16e-23 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 103.74 E-value: 1.16e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 44 FPLHVW*PDAMEGPTPISALIHAATMVAAGIF-LVARLLPLFIVIPSIM-YIISLIGIITVLLGATLALAQKDIKRGLAY 121
Cdd:PRK05846 228 FPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYgLLRFSLPLFPDASHEFaPIIITLGVIAIIYGALVALAQTDIKKLIAY 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 122 STMSQLGYMMLALGMGSYRS---ALFHLITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMILMGGLTKHVPITKTAF 198
Cdd:PRK05846 308 SSISHMGFVTLGIFAGNQLGiqgAIFQMISHGLSSAALFLLVGVLYDRL---------HTRDIADYGGLAKVMPVLAAFF 378
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 193163427 199 LVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IACSTAGLTAFYMSRIYLL*FEGHLN 259
Cdd:PRK05846 379 LFFAMASLGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPVK 439
|
|
| PRK08601 |
PRK08601 |
NADH dehydrogenase subunit 5; Validated |
38-187 |
5.05e-23 |
|
NADH dehydrogenase subunit 5; Validated
Pssm-ID: 236310 [Multi-domain] Cd Length: 509 Bit Score: 102.04 E-value: 5.05e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 38 IAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLvARLLPLFI-VIPSImyIISLIGIITVLLGATLALAQKDIK 116
Cdd:PRK08601 215 MIPAAQWPFQRWLIESAVAPTPVSAIMHAGLVNAGGIML-TRFSPLFHdDIAQI--LLLIFASISVLIGTGISLVQVDYK 291
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 193163427 117 RGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMILMGGL 187
Cdd:PRK08601 292 RQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGSAVPRFNIVKQANEKKSYLWIVVGRV 362
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
44-216 |
5.53e-23 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 101.93 E-value: 5.53e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 44 FPLHVW*PDA-MEGPTPISALihaatmvaagifLVARLLP--LFIVI--------------PSIMYIIslIGIITVLLGA 106
Cdd:PRK06458 231 FPMHAWLPDAhSEAPSPVSAL------------LSGVLLNvaLYAVLryyilidaaigsdfPGRLLLI--FGLLSVLVAA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 107 TLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMIL 183
Cdd:PRK06458 297 FFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGplgIFAALLHMLNHSLTKSAIFFASGNVLQKY---------GTRDINV 367
|
170 180 190
....*....|....*....|....*....|...
gi 193163427 184 MGGLTKHVPITKTAFLVGTLSLCGIPPLACFWS 216
Cdd:PRK06458 368 IRGLLKVSPLTGWGLMLGALAIAGMPPFGVFIS 400
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
40-246 |
8.76e-23 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 101.17 E-value: 8.76e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAM-EGPTPISALIHAATMVAAGIFLVARLLPLFiviP----SIMYIISLIGIITVLLGATLALAQKD 114
Cdd:TIGR01972 216 KVPLFPLHTWLPDAHvEAPTAGSVILAGVLLKMGTYGFLRFNLPLF---PdaslYFAPVLAALGVIAIIYGALIALAQTD 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 115 IKRGLAYSTMSQLGYMMLALGMGSYRS---ALFHLITHAYSKALLFLGSGSIihsmeaivgYSPDKSQNMILMGGLTKHV 191
Cdd:TIGR01972 293 IKRLIAYSSISHMGFVLLGIFSFNELGisgAVFQMISHGLITAALFLLVGVL---------YERAHTRDIAKYGGLANKM 363
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 193163427 192 PITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IACSTAGLTAFYM 246
Cdd:TIGR01972 364 PVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYM 418
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
40-261 |
1.61e-20 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 94.25 E-value: 1.61e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAMEGP-TPISALIhAATMVAAGIFLVARLLPLFIV--IPSIMYIISLIGIITVLLGATLALAQKDIK 116
Cdd:PRK07691 222 KAGLFPLYFWLPGSYYAPpIAIAALF-GALLTKVGVYAIARTFTLFFShdTSFTHYLILILALLTIIFGVIGAVAYFDIK 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 117 RGLAYSTMSQLGYMMLALGMG---SYRSALFHLITHAYSKALLFLgsgsIIHSMEAIVGYSPDKSqnmilMGGLTKHVPI 193
Cdd:PRK07691 301 KIIIYNIMIAVGVILVGVAMMtesGMIGAIYYLIHDMIVKAALFL----LIGIMIKITGTTDLKK-----MGGLIKRYPV 371
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 193163427 194 TKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLF-SPIFA*IACSTAGLTAFYMSRIYLL*FEGHLN*Y 261
Cdd:PRK07691 372 LGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAgFYVSGIIVLLSSLLVLYSVIKIFLKGFWGEPKGY 440
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
40-258 |
4.13e-19 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 90.56 E-value: 4.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAMEG-PTPISALIhAATMVAAGIFLVARLLpLFIVIPSIMY--IISLIGIITVLLGATLALAQKDIK 116
Cdd:PRK08667 218 KAGIIPFHKWLPYAHPAsPSNVSALM-SGVMLKVAVYGLVRFL-MDVLSPELWWgvLILLAGSISALLGVIYALKEHDLK 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 117 RGLAYSTMSQLGYMMLALG--------------MGSYRSALFHLITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMI 182
Cdd:PRK08667 296 GLLAYSSIENIGIILMGIGlyvifgvygldtlaLLALGGALFHSLNHALFKSLLFLTAGSVVHAT---------GTRNIE 366
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 193163427 183 LMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSkdeilnDSLLFSPIFA*IACSTAGLTAFYMSRIYLL*FEGHL 258
Cdd:PRK08667 367 KMGGLVKLMPYTSALFLVGAVSIAALPPFNGFAS------ELLLYESFFQSFSVADPLIKILLFSVLAIFALTSAL 436
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
39-254 |
4.83e-19 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 89.62 E-value: 4.83e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 39 AKSAQFPLHvW*PDAMEGP-TPISALIhAATMVAAGIFLVARLLP-LFIVIPSIMY-IISLIGIITVLLGATLALAQKDI 115
Cdd:PRK12663 219 MKAALFPFM-WLPAAYHTPnTEVAALF-AALLTKVGIYALIRVFTlLFPQERELLHpLLATMAAITMVIGALGALAYKDI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 116 KRGLAYSTMSQLGYMMLALGMGSY---RSALFHLITHAYSKALLFLGSGSIIhsmeAIVGYSPDKSqnmilMGGLTKHVP 192
Cdd:PRK12663 297 RRIAGYQVISSIGFILLGLALGTPagiNGAIFYLVHDMVVKTALFLIAGSLV----RLTGYRSLQY-----LGGLYRKEP 367
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 193163427 193 ITKTAFLVGTLSLCGIPPLACFWSKDEILNDSL-LFSPIFA*IACSTAGLTAFYMSRIYLL*F 254
Cdd:PRK12663 368 LFGALFLILIFAIGGLPPFSGFWGKVLLVQGALdNGAYILLALMLITSLITMYSLFRIFFLAY 430
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
1-273 |
6.69e-19 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 89.24 E-value: 6.69e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFEIFNNLILNNrvNLLFLt*****L*GGPIAKSAQFPLHVW*PDAMEG-PTPISALIHAATMVAA-GIFLVA 78
Cdd:TIGR01770 181 GSLNFEDLLLFLSNGMLNI--SLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGaPTPVTAFFSIVPKIAIfAVFLRL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 79 RLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKAL 155
Cdd:TIGR01770 257 FLYILFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTlegIKAVLFYIFIYALMSLG 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 156 LFlgsgSIIHSMEAIVGYSPDksqNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILNdSLLFSPIF--A* 233
Cdd:TIGR01770 337 AF----GVLSLLRSYKDEWIE---YISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFF-ALLKSGLYwlAV 408
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 193163427 234 IACSTAGLTAFYMSRIYLL*FEGHLN*YFINYSGKKSSSF 273
Cdd:TIGR01770 409 IAVLTSVIGAFYYLRVVKVMYFDKPERRIPSNPQSKAQSL 448
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
40-217 |
8.70e-18 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 86.18 E-value: 8.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAM-EGPTPISAlIHAATMVAAGIFLVARLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRG 118
Cdd:PRK12665 222 KAAVFPLSFWLPDSYpTAPAPVTA-VFAGLLTKVGVYAIIRTHTLLFPGGGLDTLLMVVALLTMVVGILGAIAQSDIKRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 119 LAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGSGSIihsmEAIVGyspdkSQNMILMGGLTKHVPITK 195
Cdd:PRK12665 301 LSFTLVSHIGYMVFGIALSTvagLSGAIYYVAHHITVQTTLFLVVGLI----ERQAG-----SSSLRRLGGLAKASPLLA 371
|
170 180
....*....|....*....|..
gi 193163427 196 TAFLVGTLSLCGIPPLACFWSK 217
Cdd:PRK12665 372 VLFFVPALNLGGIPPFSGFIGK 393
|
|
| PRK12668 |
PRK12668 |
Na(+)/H(+) antiporter subunit D; |
40-217 |
1.65e-17 |
|
Na(+)/H(+) antiporter subunit D;
Pssm-ID: 237168 [Multi-domain] Cd Length: 581 Bit Score: 85.33 E-value: 1.65e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFivipsimYIISLIGIITVLLGATLALAQKDIKRGL 119
Cdd:PRK12668 196 NAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALARAFPGT-------ELLIYIGAAMAVYGVFFALLENDLRRLL 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 120 AYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGSGSIIHSmeaiVGYSpdksqNMILMGGLTKHVPITKT 196
Cdd:PRK12668 269 SYHIVSQVGYMVAGIGIGTalaINGAVAHAFNHILYKGLLFMSAGAVLYR----TGTE-----KLTELGGLYRSMPLTAL 339
|
170 180
....*....|....*....|.
gi 193163427 197 AFLVGTLSLCGIPPLACFWSK 217
Cdd:PRK12668 340 FCLVGALSISAFPLFSGFVSK 360
|
|
| PRK08042 |
PRK08042 |
formate hydrogenlyase subunit 3; Reviewed |
45-256 |
3.51e-16 |
|
formate hydrogenlyase subunit 3; Reviewed
Pssm-ID: 181206 [Multi-domain] Cd Length: 593 Bit Score: 81.41 E-value: 3.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 45 PLHVW*PDAMEGPTPISALIHAATMVAAGIF------LVARLLPLFIVIpsimyIISLIGIITVLLGATLALAQKDIKRG 118
Cdd:PRK08042 198 PLHGWVPQAHANASAPAAALFSTVVMKIGLLgiltlsLLGGNAPLWWGV-----ALLVLGMITAFVGGLYALMEHNIQRL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 119 LAYSTMSQLGYMMLALGMG--------------SYRSALFHLITHAYSKALLFLGSGSIIHSmeaiVGYspdksQNMILM 184
Cdd:PRK08042 273 LAYHTLENIGIILLGLGAGvtgialeqpalialGLVGGLYHLLNHSLFKSVLFLGAGSVWFR----TGH-----RDIEKL 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 185 GGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEI------LNDSLLF-----SPIFA*IACSTAGLTAFYMSRIYLL* 253
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIyqsffkLSNSGAFvarllGPLLAVGLAITGALAVMCMAKVYGVT 423
|
...
gi 193163427 254 FEG 256
Cdd:PRK08042 424 FLG 426
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
40-217 |
4.30e-15 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 77.78 E-value: 4.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAMEG-PTPISALIHAATMvAAGIFLVARLLPLfiVIPSI----MYIISLIGIITVLLGATLALAQKD 114
Cdd:PRK02504 223 KISAVPFHQWTPDVYEGsPTPVVAFLSVGSK-AAGFALAIRLLVT--AFPSFdeqwKLLFTALAILSMVLGNVVALAQTS 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 115 IKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITH------AYSKALLF-LGSGSiihsmEAIVGYSpdksqnmilm 184
Cdd:PRK02504 300 MKRMLAYSSIGQAGFVMIGLVAGTeagYASMVFYLLAYlfmnlgAFACVILFsLRTGT-----DQISDYA---------- 364
|
170 180 190
....*....|....*....|....*....|...
gi 193163427 185 gGLTKHVPITKTAFLVGTLSLCGIPPLACFWSK 217
Cdd:PRK02504 365 -GLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
40-252 |
1.05e-14 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 76.22 E-value: 1.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAM-EGPTPISalihaatMVAAGIFLV----------ARLLPLFIVIPSIMYIIslIGIITVLLGATL 108
Cdd:PRK12561 198 KLPIFPLHTWLPDAHgEASAPVS-------MILAGVLLKmggyalirfnVQMLPDAHVYFAPALAI--LGVVNIIYGALN 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 109 ALAQKDIKRGLAYSTMSQLGYMMlaLGMGSYRS-----ALFHLITHAYSKALLFLGSGsiihsmeaiVGYSPDKSQNMIL 183
Cdd:PRK12561 269 AFAQDNVKRRLAYSSVSHMGFVL--LGIAAFTDlgisgAMLQMISHGLIAAALFFLTG---------VTYERTHTLSIPN 337
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 193163427 184 MGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEI---LNDSLLFSPIFA*IacsTAGLTA--FYMSRIYLL 252
Cdd:PRK12561 338 MGGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVflgITSSDVYSSTFRTI---TILLAAvgLILTPIYLL 408
|
|
| PRK12662 |
PRK12662 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
1-249 |
1.66e-14 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 75.54 E-value: 1.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQDLFEIFNNLILNN--RVNLLFLT*****l*gGPIAKSAQFPLHVW*PDAM-EGPTPISALIhAATMVAAGIFLV 77
Cdd:PRK12662 188 GTLNMGDMFLIIQDLPTNRaiQIGVLFIMV-------GLFIKAALFPFHKWLIQAYsEAPSFISVFF-SGTSTKVMIYLI 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 78 ARLL------PLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLIT 148
Cdd:PRK12662 260 IRIVydvfkaNFVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYglaAAVAYIVN 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 149 HAYSKALLFLGSGSIIHsmeaivGYSPDKSQNMIlmgGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILN---DSL 225
Cdd:PRK12662 340 HSIVKSALFMVSGSISY------HFGTTKLEDCL---NLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDafiKSN 410
|
250 260
....*....|....*....|....
gi 193163427 226 LFSPIFA*IACStaGLTAFYMSRI 249
Cdd:PRK12662 411 AWIGLVVLLVGS--GLSVIYVWKI 432
|
|
| ND5 |
MTH00063 |
NADH dehydrogenase subunit 5; Provisional |
38-217 |
3.16e-14 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214414 [Multi-domain] Cd Length: 522 Bit Score: 74.92 E-value: 3.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 38 IAKSAQFPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARlLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKR 117
Cdd:MTH00063 168 FTKSASFPFISWLLEAMRAPTPVSSLVHSSTLVAAGVWFVMR-YDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKK 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 118 GLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIihsmeaIVGYSPDKSQNMILMGGLTKHVPITKTA 197
Cdd:MTH00063 247 IVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDV------MSGSGGSQSSNCVYSSILYGSWNLFYLF 320
|
170 180
....*....|....*....|
gi 193163427 198 FLVgtLSLCGIPPLACFWSK 217
Cdd:MTH00063 321 LLV--LGLSGVPFIGVFFSK 338
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
44-264 |
1.14e-13 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 73.20 E-value: 1.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 44 FPLHVW*PDA-MEGPTPISALIhAATMVAAGIFLVAR----LLPLFIVIpsIMYIISLIGIITVLLGATLALAQKDIKRG 118
Cdd:PRK06473 222 VPFHTWLPDAhVEASTPVSVLL-AGVLLKLGTYGLLRfgvgLFPEAWVY--LAPWLATWAVVSVLYGASCAIAQKDMKKM 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 119 LAYSTMSQLGYMMLALGMG---SYRSALFHLITHAYSKALLFLGSGsiihsmeaiVGYSPDKSQNMILMGGL---TKHVP 192
Cdd:PRK06473 299 VAYSSIGHMGYILLAAAAAtplSILAAVFQMISHGLISALLFLLVG---------VVYKKTGSRDVDVLRGLlnpERGLP 369
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 193163427 193 ITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IACSTAGLTAFYMSRIYLL*FEGHLN*YFIN 264
Cdd:PRK06473 370 ITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFGRLTAELSN 441
|
|
| PRK06277 |
PRK06277 |
energy conserving hydrogenase EhbF; |
60-217 |
1.45e-13 |
|
energy conserving hydrogenase EhbF;
Pssm-ID: 235767 [Multi-domain] Cd Length: 478 Bit Score: 72.76 E-value: 1.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 60 ISALIHA---ATMVAAGIFLVaRLLPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGM 136
Cdd:PRK06277 233 GSALLQTfskFVLVALMLVIF-KLFGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLAL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 137 G---SYRSALFHLITHAYSKALLFLGSGSIihsmeaivgYSPDKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLAC 213
Cdd:PRK06277 312 GtplGIVAGIFHAINHVIYKSALFLGAGIV---------SYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNG 382
|
....
gi 193163427 214 FWSK 217
Cdd:PRK06277 383 FQSK 386
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
36-246 |
1.58e-13 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 72.48 E-value: 1.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 36 GPIAKSAQFPLHVW*PDA-MEGPTPISALIhAATMVAAGIFLVARLLPLFI---VIPSIMYIISLIGIITVLLGATLALA 111
Cdd:PRK08676 215 GFLAKSGLVPFHTWLPAAyAKAPSVVSALL-SGTVLNIGIYGILRLSALLRqsgAAEQFSNVLIGLGIFSIAVAAFSMLS 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 112 QKDIKRGLAYSTMSQLGYMMLALGMGSYRS---ALFHLITHAYSKALLFLGSGsIIHSMeaivgYSPDKSQNmilMGGLT 188
Cdd:PRK08676 294 QRNLKKLIAFSSIEHMGLMLLGIGIGTPLAlfwMLFHMLAHSLVKSGLFFSAG-ILHRQ-----YRSDRFDR---IFDVF 364
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 193163427 189 KHVPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSP-----IFA*IACSTAGLTAFYM 246
Cdd:PRK08676 365 RLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVwlvlaVLLLLLLAASSFAIFLL 427
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
1-278 |
3.87e-13 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 71.57 E-value: 3.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 1 GSFEFQdlfEIFNNLILNNRVNLLFLT*****L*GGPIAKSAQFPLHVW*PDAMEG-PTPISALIhAATMVAAGIFLVAR 79
Cdd:CHL00049 191 GEIELQ---EIVNGLINTQMYNSPGISIALIFITVGIGFKLSLAPFHQWTPDVYEGsPTPVVAFL-SVTSKVAASALATR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 80 LLPlfIVIPSIM----YIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKAL 155
Cdd:CHL00049 267 IFD--IPFYFSSnewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYIF 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 156 LFLGSGSIIHSMEAIVGyspdkSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEIL---NDSLLFSPIFa 232
Cdd:CHL00049 345 MNLGTFACIVLFGLRTG-----TDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFwcgWQAGLYFLVS- 418
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 193163427 233 *IACSTAGLTAFYMSRIYLL*FEGH---LN*YFINYSGKKSSSFYSISL 278
Cdd:CHL00049 419 -IGLLTSVISIYYYLKIIKLLMTGRnqeITPYVRNYRRSPLRSNNSIEL 466
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
45-245 |
6.44e-13 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 70.90 E-value: 6.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 45 PLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARL-LPLFiviPSIMYIIS----LIGIITVLLGATLALAQKDIKRGL 119
Cdd:PRK07363 223 PLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFgLQLF---PQTWSLVApglaIIGTISVIYGALSAIAQKDIKRMV 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 120 AYSTMSQLGYMMLALGMGSYRS---ALFHLITHAYSKALLFLGSGSIihsmEAIVGyspdkSQNMILMGGLTKHV---PI 193
Cdd:PRK07363 300 AYSSIGHMGYILVAAAAGTQLSllgAVAQMISHGLILALLFHLVGIV----ERKVG-----TRDLDVLNGLMNPIrglPL 370
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 193163427 194 TKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IACSTAGLTAFY 245
Cdd:PRK07363 371 TSALLVLAGMASAGIPGLVGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVY 422
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
45-236 |
3.16e-11 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 64.67 E-value: 3.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 45 PLHVW*PDAMEG-PTPISALIhaATMVAAGIFLvarllpLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYST 123
Cdd:MTH00196 113 PFHMWAPDVYEGaPTKTTALL--AIVPKLGIFS------ILVSIGLNVNILLIGGLFSLFVGAIGALNQTKIKRLLAYSG 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 124 MSQLGYMMLALGMGSYRS---ALFHLITHAYSKALLFLgsgsiihsmeAIVGYSPDKSQnMILMGGLTKHVPITKTAFLV 200
Cdd:MTH00196 185 IGHMGFVLWGIEIGSFESiqaSLVYLFIYIIMSICVFS----------IILALNVYKNL-IIEFSGLSRRLPILAITLAL 253
|
170 180 190
....*....|....*....|....*....|....*.
gi 193163427 201 GTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IAC 236
Cdd:MTH00196 254 TFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLA 289
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
45-221 |
3.42e-11 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 65.04 E-value: 3.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 45 PLHVW*PDAMEG-PTPISALIhaATMVAAGIFlvarllPLFIVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYST 123
Cdd:MTH00199 208 PFHMWAPDVYEGaPTITTALL--ATVPKIGVF------SILVQIGPVTNVVLICAVLSIIYGAIGALNQTKIKRLLAYSG 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 124 MSQLGYMMLALGMGSYRS---ALFHLITHayskALLFLGSGSIIHSMEAIVGYspdksqnMILMGGLTKHVPITKTAFLV 200
Cdd:MTH00199 280 IGHMGFILFGVAIGSFESiqaSLIYMIIY----VIMSICSFSIILSLKLTKGL-------IVEVSGLSRKNPVIALTLAL 348
|
170 180
....*....|....*....|.
gi 193163427 201 GTLSLCGIPPLACFWSKDEIL 221
Cdd:MTH00199 349 TFLSIAGIPPLAGFLSKWLIL 369
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
40-249 |
6.13e-11 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 64.88 E-value: 6.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDAMEG-PTPISALIHAATMVAAGIFLVArllplfIVIPSIMYIIslIGIITVLLGATLALAQKDIKRG 118
Cdd:MTH00198 312 KLAAAPFHMWTPDVYEGaPTPTTALIAIIPKFTVYILLTS------LVITSKLLLS--VAIISLVVGAFGALNQTRIKRL 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 119 LAYSTMSQLGYMMLALGMGSYRSaLFHLITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMILMGG------------ 186
Cdd:MTH00198 384 LAYSGIGHIGFILIGVSAGTYES-LQASWTYAVTYLVSALASFTVICTLEEFGTRTPTSRQRDGSFGNynlvrrlvdlti 462
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 193163427 187 LTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFS-----PIF---A*IACSTAGLTAFYMSRI 249
Cdd:MTH00198 463 LSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAfssslSIYylvALFAIICTCISAFYYIRI 533
|
|
| PRK12666 |
PRK12666 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
39-247 |
2.93e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237166 [Multi-domain] Cd Length: 528 Bit Score: 59.09 E-value: 2.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 39 AKSAQFPLHVW*PDA-MEGPTPISALIhaATMVAAGIFLVARLLPLF----------IVIPSIMYiislIGIITVLLGAT 107
Cdd:PRK12666 222 IKAAMWPLNFWLPPAyAAASAPVAALF--AIMTKVGIYAILRLSTLLfgpeagasagFGQDWLLP----GGLATLAFGAI 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 108 LALAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFL-----------GSGSIIHSMEAivgY 173
Cdd:PRK12666 296 GVLAAQRLRRLAAYLVLVSSGTLLAAIGLGNPAataAALYYLVHSTLAAAALFLladlverqrgaAADRLAVTPEL---Y 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 174 SPDKSQNMILMGGLTKHVPITKTAFLVGTLSLCGIPPLACFWSK----DEILNDS-----------LLFSPIFA*IACST 238
Cdd:PRK12666 373 DLDEEEEEEVGVAIPATMALLGLLFFICALALAGLPPLSGFLGKfallQALLNPPgagaawwlwalVLLSGLAALIALTR 452
|
....*....
gi 193163427 239 AGLTAFYMS 247
Cdd:PRK12666 453 AGIRLFWAS 461
|
|
| PRK02546 |
PRK02546 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
44-252 |
1.13e-08 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 235050 [Multi-domain] Cd Length: 525 Bit Score: 57.41 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 44 FPLHVW*PDAMEGPTpisALIHaatMVAAGIFLV----------ARLLPLFIVIPSIMYIIslIGIITVLLGATLALAQK 113
Cdd:PRK02546 230 VPLHTWLPDAHGEAT---APVH---MLLAGILLKmggyallrmnAGMLPDAHAQFAPLLIV--LGVVNIIYAALTSFAQR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 114 DIKRGLAYSTMSQLGYMMlaLGMGSYRS-----ALFHLITHAYSKALLFLgsgsiihsmeaIVGYSPDKSQNMIL--MGG 186
Cdd:PRK02546 302 NLKRKIAYSSISHMGFVL--IGIGSFTDlgtsgAMLQMISHGLIGASLFF-----------LVGATYDRTHTLMLdeMGG 368
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 193163427 187 LTKHVPITKTAFLVGTLSLCGIPPLACFWSKDEI---LNDSLLFSPIFA*IACSTAGLTAFyMSRIYLL 252
Cdd:PRK02546 369 VGQKMRKMFAMWTACSLASLALPGMSGFVAELMVfvgFATSDAYTLPFRVVVVFLAAVGVI-LTPIYLL 436
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
44-279 |
8.29e-08 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 54.12 E-value: 8.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 44 FPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLfiviPSIMYIISLIGIITVLLGATLALAQKDIKRGLAYST 123
Cdd:MTH00144 101 FPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDL----YWLAYLLCVISVLSALVGSIGGLNQTQVRALLAYSS 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 124 MSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMILMGGLtkhvpitktaflvgtL 203
Cdd:MTH00144 177 ISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLL---------------L 241
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 193163427 204 SLCGIPPLACFWSKDEILNDSLLFSPIFA*IACSTAGLTA--FYMSRIYLL*feghLN*YFINYSGKKSSSFYSISLW 279
Cdd:MTH00144 242 SLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISlfFYLSVFFSSF----LSSSKSKKSNSSKVLNSSIISL 315
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
45-223 |
2.85e-07 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 52.52 E-value: 2.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 45 PLHVW*PDAMEGPTPISALIHAATMVAAGIFLvarllpLFIVIPSI-MYIISLIGIITVLLGATLALAQKDIKRGLAYST 123
Cdd:MTH00112 110 PFHFWLPEVLQGSTTTTALILSTWQKLAPLTL------LLMTSNSLnPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSS 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 124 MSQLGYMMLALGMgSYRSALFHLITHAYSKALLFLgsgsIIHSMEAIvgyspdKSQNMILMggLTKhVPITKTAFLVGTL 203
Cdd:MTH00112 184 IAHLGWMIAIITY-SPKLTLLTFYIYILMTTPMFL----TLNTTSTK------TLKDMMTS--WTK-SPTLNTTLMLTLL 249
|
170 180
....*....|....*....|
gi 193163427 204 SLCGIPPLACFWSKDEILND 223
Cdd:MTH00112 250 SLAGLPPLTGFMPKWLILQE 269
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
44-245 |
5.97e-07 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 51.85 E-value: 5.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 44 FPLHVW*PDA-MEGPTPISALIHAATMVAAGIFLVARLLPLF-IVIPSIMYIISLIGIITVLLGATLALAQKDIKRGLAY 121
Cdd:MTH00226 247 FPFHIWLPKAhVEAPVAGSVLLAGILLKLGGYGLVRLSWPILpLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAY 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 122 STMSQLGYMMLAL---GMGSYRSALFHLITHAYSKALLFLgsgsiihsmEAIVGYSPDKSQNMILMGGLTKHVPITKTAF 198
Cdd:MTH00226 327 SSVAHMGLVSITLvthDIIGLTGSIFIMLAHGIVSSLLFI---------LVTILYDRHHTRLIKYYRGLSITMPIWGTIM 397
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 193163427 199 LVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IACSTAGLTAFY 245
Cdd:MTH00226 398 IVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIGVFVCSGVILSAVY 444
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
44-249 |
1.37e-06 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 50.35 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 44 FPLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLfivipSIMYIISLIGIITVLLGATLALAQKDIKRGLAYST 123
Cdd:MTH00200 109 APGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPA-----LNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSS 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 124 MSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLgsgsiihsmeaivgYSPDKSQNMILMGGLTKHVPITKTAFLVGTL 203
Cdd:MTH00200 184 IAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLL--------------LNLLNSTKINSLSSSKTKNPILSMLLGLTLL 249
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 193163427 204 SLCGIPPLACFWSKDEILNDSLLFS-PIFA*IACSTAGLTAFYMSRI 249
Cdd:MTH00200 250 SLGGLPPLTGFFPKWLILQELSKQGlFIYATILLLGSLLSLFFYLRL 296
|
|
| PRK06459 |
PRK06459 |
hydrogenase 4 subunit B; Validated |
36-211 |
8.48e-06 |
|
hydrogenase 4 subunit B; Validated
Pssm-ID: 235806 [Multi-domain] Cd Length: 585 Bit Score: 48.25 E-value: 8.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 36 GPIAKSAQFPLHV--W*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPS--IMYIISLIGIITVLLGATLALA 111
Cdd:PRK06459 167 GFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTILTQTIPIgyFGLTILAIGAFSILFGALYAYV 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 112 QKDIKRGLAYSTMSQLGYMMLALGM--------GSYR-----SALFHLITHAYSKALLFLGSGsiiHSMEAIVGYSPDKS 178
Cdd:PRK06459 247 SENVKGLLAFSTIENNGAILVALGLymvtkqliTSIEhfsliTVILYSFAHSVAKTGLFLSSG---LQEKQSITYSKKIR 323
|
170 180 190
....*....|....*....|....*....|...
gi 193163427 179 QNMILMGGltkhvpitktafLVGTLSLCGIPPL 211
Cdd:PRK06459 324 NRWIELGL------------TLLASSLSGLLPN 344
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
11-222 |
1.54e-05 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 46.97 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 11 IFNNLILNNRVNLLFLT*****l*gGPIAKSAQFPLHVW*PDAMEGPTPISALIhaatmvaagIFLVARLLPLFIV--IP 88
Cdd:MTH00197 71 SFSNLYLSLLSVVLVIL--------GLLLKLGAFPFHFWVPSVMESLSWFNCFL---------LATWQKLAPLLILafNS 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 89 SIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSME 168
Cdd:MTH00197 134 SSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLN 213
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 193163427 169 AIVGYSPDKSQNMILmggltkhvpitktaFLVGTLSLCGIPPLACFWSKDEILN 222
Cdd:MTH00197 214 QQYSNPESMSSNLVF--------------LGLSFLSLGGLPPLSGFFLKWLILT 253
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
44-231 |
1.62e-05 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 46.85 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 44 FPLHVW*PDAMEGPTPISALIhaatmvAAGIFLVARLLPLFIVIPSI-MYIISLIGIITVLLGATLALAQKDIKRGLAYS 122
Cdd:MTH00041 109 APCHFWFPDVLQGLPFLQGLI------IATWQKIAPLILLISISNLLnSNILILCGILSVLVGGWGGLNQTQTRKILAFS 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 123 TMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMEAIvgyspdksqnmilmGGLTKHVPITKTAFLVGT 202
Cdd:MTH00041 183 SIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHL--------------NKLSQLNPISAFLFILSI 248
|
170 180 190
....*....|....*....|....*....|....
gi 193163427 203 LSLCGIPPLACFWSK-----DEILNDSLLFSPIF 231
Cdd:MTH00041 249 LSLGGLPPLTGFLNKfislyCLIQNNSILISIIL 282
|
|
| ndhD |
CHL00011 |
NADH dehydrogenase subunit 4 |
40-198 |
1.42e-04 |
|
NADH dehydrogenase subunit 4
Pssm-ID: 176954 [Multi-domain] Cd Length: 498 Bit Score: 44.17 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDamegpTPISAliHAAT-MVAAGIFLVA----------RLLP--LFIVIPSIMyiisLIGIITVLLGA 106
Cdd:CHL00011 224 KLPIIPLHTWLPD-----THGEA--HYSTcMLLAGILLKMgayglirinmELLPhaHSIFSPWLV----IVGAIQIIYAA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 107 TLALAQKDIKRGLAYSTMSQLGYMMlaLGMGSY-----RSALFHLITHAYSKALLFLgsgsiihsmeaIVGYSPDKSQNM 181
Cdd:CHL00011 293 STSLGQRNLKKRIAYSSVSHMGFII--IGIGSItdtglNGAILQIISHGFIGAALFF-----------LAGTSYDRIRLV 359
|
170
....*....|....*....
gi 193163427 182 IL--MGGLTKHVPITKTAF 198
Cdd:CHL00011 360 YLdeMGGIAIPMPKIFTMF 378
|
|
| PRK12664 |
PRK12664 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
36-234 |
2.46e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237164 [Multi-domain] Cd Length: 527 Bit Score: 43.57 E-value: 2.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 36 GPIAKSAQFPLHVW*PDAMEgptpiSALIHAATMVAAGIFLVARLLPLFIVipSIMYIISLIGIITVLLGATLALAQKDI 115
Cdd:PRK12664 153 GLLINCACFPASSWVVDAYP-----AASNFGIIVLSLFTTKVAALVLLLFF--SGEEILLFLGIITAIYGIIFASLEQNI 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 116 KRGLAYSTMSQLGYMMLALGMGSYRSA-----LFHLITHAYSKALLFLGSGSIIHSMEAIvgyspdksqNMILMGGLTKh 190
Cdd:PRK12664 226 RRLLCYNVVGQMGLLIIAIGFSGSSGVaigilILQIVLSVVYQTLLFMVADSVINRTRKF---------NLNRVGGLFK- 295
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 193163427 191 VPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*I 234
Cdd:PRK12664 296 MSLEAMCCIIAILNMGAFPGTAGFVSKSLITHSIDTAGLTLVLY 339
|
|
| ND4 |
MTH00127 |
NADH dehydrogenase subunit 4; Provisional |
47-264 |
2.86e-04 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177186 [Multi-domain] Cd Length: 459 Bit Score: 43.41 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 47 HVW*PDAMEGPTPISALIHAATMVAAGIFLVARLL----PLFIVIPSIMYIISLIGIItvlLGATLALAQKDIKRGLAYS 122
Cdd:MTH00127 214 HLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMvmldPLTKELSYPFIILALWGII---MTGSICLRQTDLKSLIAYS 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 123 TMSQLGYM---MLALGMGSYRSALFHLITHAYSKALLFLgsgsiihsmEAIVGYSPDKSQNMILMGGLTKHVPITKTAFL 199
Cdd:MTH00127 291 SVSHMGLVaggILIQTPWGFTGALILMIAHGLTSSALFC---------LANTNYERTHSRTMLLARGLQMILPLMATWWF 361
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 193163427 200 VGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA*IACSTAGLTAFYMSRIYLL*FEGHLN*YFIN 264
Cdd:MTH00127 362 IASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIA 426
|
|
| ND4 |
MTH00204 |
NADH dehydrogenase subunit 4; Provisional |
40-213 |
5.00e-04 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 164750 [Multi-domain] Cd Length: 485 Bit Score: 42.74 E-value: 5.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 40 KSAQFPLHVW*PDA-MEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMY-IISLIGIITVLLGATLALAQKDIKR 117
Cdd:MTH00204 222 KIPQIPFHIWLPQAhVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFApLIVMLSVIAVIYGSLTTCRQVDFKR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 118 GLAYSTMSQLGYMMLAL---GMGSYRSALFHLITHAYSKALLFLGSGSIihsmeaivgYSPDKSQNMILMGGLTKHVPIT 194
Cdd:MTH00204 302 LIAYSSVAHMGLVPLGLfthTIEGLVAAVFLMLAHGFVSSALFIAVTFL---------YERHHTRLIKYYRGLTLTMPLF 372
|
170
....*....|....*....
gi 193163427 195 KTAFLVGTLSLCGIpPLAC 213
Cdd:MTH00204 373 VIIMLVLSLANMGF-PLSC 390
|
|
| ND4 |
MTH00068 |
NADH dehydrogenase subunit 4; Provisional |
46-216 |
7.62e-04 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214417 [Multi-domain] Cd Length: 458 Bit Score: 41.83 E-value: 7.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 46 LHVW*PDA-MEGPTpisalihAATMVAAGIFL------VARLLPLFI-VIPSIMYIISLIGIITVLLGATLALAQKDIKR 117
Cdd:MTH00068 212 LHLWLPKAhVEAPI-------AGSMILAAVLLklggygILRISILLTpLSKELSYPFIILALWGVLMTSLICLRQTDLKS 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 118 GLAYSTMSQLGYMMLALGMG---SYRSALFHLITHAY-SKALLFLgsgsiihsmeAIVGYSPDKSQNMILMGGLTKHVPI 193
Cdd:MTH00068 285 LIAYSSVSHMGLVIAAALIQtpwSFSGAIILMISHGLtSSALFCL----------ANTNYERTHSRTLLLLRGAQTILPL 354
|
170 180
....*....|....*....|...
gi 193163427 194 TKTAFLVGTLSLCGIPPLACFWS 216
Cdd:MTH00068 355 MATWWLLSNLSNMALPPSPNLWG 377
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
45-250 |
7.64e-04 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 41.69 E-value: 7.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 45 PLHVW*PDAMEGPTPISALIHAATMVAAGIFLVARLLPLfivipSIMYIISLIGIITVLLGATLALAQKDIKRGLAYSTM 124
Cdd:MTH00011 106 PCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSH-----NILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSI 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193163427 125 SQLGYMMLALgMGSYRSALFHLITHAYskallflgsgsIIHSMEAIVGYSPDKSQNMilMGGLTKHVPITKTAFLVGTLS 204
Cdd:MTH00011 181 GHMGWMTMIS-VFSPSMAILYFMTYII-----------ITTPLMLLFAYLNAFSTKF--NSKISSMSQTTSMSLFIMLLS 246
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 193163427 205 LCGIPPLACF---WSKDEILNDSLLFSPIFA*IACSTAGLTaFYMSRIY 250
Cdd:MTH00011 247 LGGLPPFTGFmpkLMAIETLTSNSMILILLVLIVGSLMNLF-YYLNLIF 294
|
|
| |
