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Conserved domains on  [gi|193090209|gb|ACF15276|]
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N-acetylglucosaminyltransferase, partial [Cupriavidus sp. CCBAU 65808]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
nodulat_NodC super family cl37405
chitooligosaccharide synthase NodC; Members of this family are NodC, an ...
 1-195 1.41e-124

chitooligosaccharide synthase NodC; Members of this family are NodC, an N-acetylglucosaminyltransferase involved in the production of nodulation factors through which rhizobia establish symbioses with leguminous plants.


The actual alignment was detected with superfamily member TIGR04242:

Pssm-ID: 275076 [Multi-domain]  Cd Length: 395  Bit Score: 356.74  E-value: 1.41e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209    1 AAQGRFGAVMCCCGPCAIYRRSALLRLLDKYETQFFRGKQSDFGEDRHLTILMLTAGYRTEYVPNAIAATVVPDKLIPYL 80
Cdd:TIGR04242 195 AAQARFGAVMCCCGPCAMYRRSALLSLLDQYETQLFRGKPSDFGEDRHLTILMLKAGFRTEYVPDAIAATVVPDKLGPYL 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209   81 RQQLRWARSTYRDTLLSLRLLPHLNGFLTLDTLAQNVGSLLLAISVISGLAQFVMTATIPWPACITIASMTFVRSTVAAI 160
Cdd:TIGR04242 275 RQQLRWARSTFRDTLLALRLLPGLDRYLTLDVIGQNLGPLLLALSVLTGLAQLALTATVPWWTILVIAAMTIIRCCVAAL 354

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 193090209  161 RARQLRFFGFSAHTLINLFLLLPVKAYALCTLGNS 195
Cdd:TIGR04242 355 RARQLRFLGFSLHTFINIFLLLPLKAYALCTLSNS 389
 
Name Accession Description Interval E-value
nodulat_NodC TIGR04242
chitooligosaccharide synthase NodC; Members of this family are NodC, an ...
 1-195 1.41e-124

chitooligosaccharide synthase NodC; Members of this family are NodC, an N-acetylglucosaminyltransferase involved in the production of nodulation factors through which rhizobia establish symbioses with leguminous plants.


Pssm-ID: 275076 [Multi-domain]  Cd Length: 395  Bit Score: 356.74  E-value: 1.41e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209    1 AAQGRFGAVMCCCGPCAIYRRSALLRLLDKYETQFFRGKQSDFGEDRHLTILMLTAGYRTEYVPNAIAATVVPDKLIPYL 80
Cdd:TIGR04242 195 AAQARFGAVMCCCGPCAMYRRSALLSLLDQYETQLFRGKPSDFGEDRHLTILMLKAGFRTEYVPDAIAATVVPDKLGPYL 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209   81 RQQLRWARSTYRDTLLSLRLLPHLNGFLTLDTLAQNVGSLLLAISVISGLAQFVMTATIPWPACITIASMTFVRSTVAAI 160
Cdd:TIGR04242 275 RQQLRWARSTFRDTLLALRLLPGLDRYLTLDVIGQNLGPLLLALSVLTGLAQLALTATVPWWTILVIAAMTIIRCCVAAL 354

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 193090209  161 RARQLRFFGFSAHTLINLFLLLPVKAYALCTLGNS 195
Cdd:TIGR04242 355 RARQLRFLGFSLHTFINIFLLLPLKAYALCTLSNS 389
GT2_HAS cd06434
Hyaluronan synthases catalyze polymerization of hyaluronan; Hyaluronan synthases (HASs) are ...
 1-92 4.84e-22

Hyaluronan synthases catalyze polymerization of hyaluronan; Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.


Pssm-ID: 133056 [Multi-domain]  Cd Length: 235  Bit Score: 89.24  E-value: 4.84e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209   1 AAQGRFGAVMCCCGPCAIYRRSALLR--LLDKYETQFFRGKQSDFGEDRHLTILMLTAGYRTEYVPNAIAATVVPDKLIP 78
Cdd:cd06434  141 AAMSYDGGVPCLSGRTAAYRTEILKDflFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTETPENYKK 220

                         90
                 ....*....|....
gi 193090209  79 YLRQQLRWARSTYR 92
Cdd:cd06434  221 FLKQQLRWSRSNWR 234
BcsA COG1215
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1, ...
 12-167 2.56e-13

Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility];


Pssm-ID: 440828 [Multi-domain]  Cd Length: 303  Bit Score: 66.69  E-value: 2.56e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209  12 CCGPCAIYRRSALLRLlDKYETqffrgkqSDFGEDRHLTILMLTAGYRTEYVPNAIAATVVPDKLIPYLRQQLRWARSTY 91
Cdd:COG1215  143 ASGANLAFRREALEEV-GGFDE-------DTLGEDLDLSLRLLRAGYRIVYVPDAVVYEEAPETLRALFRQRRRWARGGL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209  92 RDTLLSLRLLPHLNGFLTLDTLAQNVGSLLLAISVISGLAQFVMTATIPWPACITIASMTF--------VRSTVAAIRAR 163
Cdd:COG1215  215 QLLLKHRPLLRPRRLLLFLLLLLLPLLLLLLLLALLALLLLLLPALLLALLLALRRRRLLLpllhllygLLLLLAALRGK 294


                 ....
gi 193090209 164 QLRF 167
Cdd:COG1215  295 KVVW 298
Chitin_synth_2 pfam03142
Chitin synthase; Members of this family are fungal chitin synthase EC:2.4.1.16 enzymes. They ...
 44-90 3.03e-08

Chitin synthase; Members of this family are fungal chitin synthase EC:2.4.1.16 enzymes. They catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).


Pssm-ID: 367353 [Multi-domain]  Cd Length: 527  Bit Score: 52.45  E-value: 3.03e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 193090209   44 GEDRHLTILMLTA--GYRTEYVPNAIAATVVPDKLIPYLRQQLRWARST 90
Cdd:pfam03142 326 GEDRYLTTLMLKTfpKRKTVFVPQAVCKTIAPDTFKVLLSQRRRWINST 374
bcsA PRK11498
cellulose synthase catalytic subunit; Provisional
 13-88 6.10e-04

cellulose synthase catalytic subunit; Provisional


Pssm-ID: 236918 [Multi-domain]  Cd Length: 852  Bit Score: 40.01  E-value: 6.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209  13 CGPCAIYRRSALlrllDK-----YETqffrgkqsdFGEDRHLTILMLTAGYRTEYVPNAIAATVVPDKLIPYLRQQLRWA 87
Cdd:PRK11498 419 CGSCAVIRRKPL----DEiggiaVET---------VTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWA 485


                 .
gi 193090209  88 R 88
Cdd:PRK11498 486 R 486
 
Name Accession Description Interval E-value
nodulat_NodC TIGR04242
chitooligosaccharide synthase NodC; Members of this family are NodC, an ...
 1-195 1.41e-124

chitooligosaccharide synthase NodC; Members of this family are NodC, an N-acetylglucosaminyltransferase involved in the production of nodulation factors through which rhizobia establish symbioses with leguminous plants.


Pssm-ID: 275076 [Multi-domain]  Cd Length: 395  Bit Score: 356.74  E-value: 1.41e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209    1 AAQGRFGAVMCCCGPCAIYRRSALLRLLDKYETQFFRGKQSDFGEDRHLTILMLTAGYRTEYVPNAIAATVVPDKLIPYL 80
Cdd:TIGR04242 195 AAQARFGAVMCCCGPCAMYRRSALLSLLDQYETQLFRGKPSDFGEDRHLTILMLKAGFRTEYVPDAIAATVVPDKLGPYL 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209   81 RQQLRWARSTYRDTLLSLRLLPHLNGFLTLDTLAQNVGSLLLAISVISGLAQFVMTATIPWPACITIASMTFVRSTVAAI 160
Cdd:TIGR04242 275 RQQLRWARSTFRDTLLALRLLPGLDRYLTLDVIGQNLGPLLLALSVLTGLAQLALTATVPWWTILVIAAMTIIRCCVAAL 354

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 193090209  161 RARQLRFFGFSAHTLINLFLLLPVKAYALCTLGNS 195
Cdd:TIGR04242 355 RARQLRFLGFSLHTFINIFLLLPLKAYALCTLSNS 389
GT2_HAS cd06434
Hyaluronan synthases catalyze polymerization of hyaluronan; Hyaluronan synthases (HASs) are ...
 1-92 4.84e-22

Hyaluronan synthases catalyze polymerization of hyaluronan; Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.


Pssm-ID: 133056 [Multi-domain]  Cd Length: 235  Bit Score: 89.24  E-value: 4.84e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209   1 AAQGRFGAVMCCCGPCAIYRRSALLR--LLDKYETQFFRGKQSDFGEDRHLTILMLTAGYRTEYVPNAIAATVVPDKLIP 78
Cdd:cd06434  141 AAMSYDGGVPCLSGRTAAYRTEILKDflFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTETPENYKK 220

                         90
                 ....*....|....
gi 193090209  79 YLRQQLRWARSTYR 92
Cdd:cd06434  221 FLKQQLRWSRSNWR 234
CESA_CelA_like cd06421
CESA_CelA_like are involved in the elongation of the glucan chain of cellulose; Family of ...
 5-92 1.51e-14

CESA_CelA_like are involved in the elongation of the glucan chain of cellulose; Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.


Pssm-ID: 133043 [Multi-domain]  Cd Length: 234  Bit Score: 69.14  E-value: 1.51e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209   5 RFGAVMCCcGPCAIYRRSALLRLldkyetqffRGKQSD-FGEDRHLTILMLTAGYRTEYVPNAIAATVVPDKLIPYLRQQ 83
Cdd:cd06421  154 RWGAAFCC-GSGAVVRREALDEI---------GGFPTDsVTEDLATSLRLHAKGWRSVYVPEPLAAGLAPETLAAYIKQR 223


                 ....*....
gi 193090209  84 LRWARSTYR 92
Cdd:cd06421  224 LRWARGMLQ 232
Chitin_synth_C cd04190
C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate ...
 6-91 2.37e-13

C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin; Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.


Pssm-ID: 133033 [Multi-domain]  Cd Length: 244  Bit Score: 66.18  E-value: 2.37e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209   6 FGAVMCCCGPCAIYRRSALLRLLDKYETQFFRGK------------QSDFGEDRHLTILMLTAGYRTE--YVPNAIAATV 71
Cdd:cd04190  143 FGFVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYltntvdslhkknNLDLGEDRILCTLLLKAGPKRKylYVPGAVAETD 222

                         90       100
                 ....*....|....*....|
gi 193090209  72 VPDKLIPYLRQQLRWARSTY 91
Cdd:cd04190  223 VPETFVELLSQRRRWINSTI 242
BcsA COG1215
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1, ...
 12-167 2.56e-13

Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility];


Pssm-ID: 440828 [Multi-domain]  Cd Length: 303  Bit Score: 66.69  E-value: 2.56e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209  12 CCGPCAIYRRSALLRLlDKYETqffrgkqSDFGEDRHLTILMLTAGYRTEYVPNAIAATVVPDKLIPYLRQQLRWARSTY 91
Cdd:COG1215  143 ASGANLAFRREALEEV-GGFDE-------DTLGEDLDLSLRLLRAGYRIVYVPDAVVYEEAPETLRALFRQRRRWARGGL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209  92 RDTLLSLRLLPHLNGFLTLDTLAQNVGSLLLAISVISGLAQFVMTATIPWPACITIASMTF--------VRSTVAAIRAR 163
Cdd:COG1215  215 QLLLKHRPLLRPRRLLLFLLLLLLPLLLLLLLLALLALLLLLLPALLLALLLALRRRRLLLpllhllygLLLLLAALRGK 294


                 ....
gi 193090209 164 QLRF 167
Cdd:COG1215  295 KVVW 298
Chitin_synth_2 pfam03142
Chitin synthase; Members of this family are fungal chitin synthase EC:2.4.1.16 enzymes. They ...
 44-90 3.03e-08

Chitin synthase; Members of this family are fungal chitin synthase EC:2.4.1.16 enzymes. They catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).


Pssm-ID: 367353 [Multi-domain]  Cd Length: 527  Bit Score: 52.45  E-value: 3.03e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 193090209   44 GEDRHLTILMLTA--GYRTEYVPNAIAATVVPDKLIPYLRQQLRWARST 90
Cdd:pfam03142 326 GEDRYLTTLMLKTfpKRKTVFVPQAVCKTIAPDTFKVLLSQRRRWINST 374
Glucosylceramide_synthase cd02520
Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid ...
 10-90 9.99e-05

Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis; UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.


Pssm-ID: 133012 [Multi-domain]  Cd Length: 196  Bit Score: 41.43  E-value: 9.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209  10 MCCCGPCAIYRRSALLRLLDkyetqfFRGKQSDFGEDRHLTILMLTAGYRTEYVPNAIAATVVPDKLIPYLRQQLRWARS 89
Cdd:cd02520  122 LCAFGKSMALRREVLDAIGG------FEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPLGSTSLASFWRRQLRWSRT 195


                 .
gi 193090209  90 T 90
Cdd:cd02520  196 R 196
CESA_like cd06423
CESA_like is the cellulose synthase superfamily; The cellulose synthase (CESA) superfamily ...
 1-27 5.21e-04

CESA_like is the cellulose synthase superfamily; The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan.


Pssm-ID: 133045 [Multi-domain]  Cd Length: 180  Bit Score: 39.13  E-value: 5.21e-04
                         10        20
                 ....*....|....*....|....*..
gi 193090209   1 AAQGRFGAVMCCCGPCAIYRRSALLRL 27
Cdd:cd06423  143 RAQSALGGVLVLSGAFGAFRREALREV 169
bcsA PRK11498
cellulose synthase catalytic subunit; Provisional
 13-88 6.10e-04

cellulose synthase catalytic subunit; Provisional


Pssm-ID: 236918 [Multi-domain]  Cd Length: 852  Bit Score: 40.01  E-value: 6.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209  13 CGPCAIYRRSALlrllDK-----YETqffrgkqsdFGEDRHLTILMLTAGYRTEYVPNAIAATVVPDKLIPYLRQQLRWA 87
Cdd:PRK11498 419 CGSCAVIRRKPL----DEiggiaVET---------VTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWA 485


                 .
gi 193090209  88 R 88
Cdd:PRK11498 486 R 486
Glyco_tranf_2_3 pfam13641
Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include ...
 9-89 1.28e-03

Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis.


Pssm-ID: 433372 [Multi-domain]  Cd Length: 230  Bit Score: 38.51  E-value: 1.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209    9 VMCCCGPCAIYRRSALLRLLDKyetqffrGKQSDFGEDRHLTILMLTAGYRTEYVPNAIAATVVPDKLIPYLRQQLRWAR 88
Cdd:pfam13641 157 VLPLSGAGSAIRREVLKELGLF-------DPFFLLGDDKSLGRRLRRHGWRVAYAPDAAVRTVFPTYLAASIKQRARWVY 229


                  .
gi 193090209   89 S 89
Cdd:pfam13641 230 G 230
Glyco_trans_2_3 pfam13632
Glycosyl transferase family group 2; Members of this family of prokaryotic proteins include ...
 14-88 1.97e-03

Glycosyl transferase family group 2; Members of this family of prokaryotic proteins include putative glucosyltransferases, which are involved in bacterial capsule biosynthesis.


Pssm-ID: 433365 [Multi-domain]  Cd Length: 192  Bit Score: 37.70  E-value: 1.97e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 193090209   14 GPCAIYRRSALLRLldkyetQFFRGkqSDFGEDRHLTILMLTAGYRTEYVPNAIAATVVPDKLIPYLRQQLRWAR 88
Cdd:pfam13632  74 GSGAFLRRSALQEV------GGWDD--GSVSEDFDFGLRLQRAGYRVRFAPYSAVYEKSPLTFRDFLRQRRRWAY 140
CESA_NdvC_like cd06435
NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase; ...
 45-87 4.24e-03

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase; NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.


Pssm-ID: 133057 [Multi-domain]  Cd Length: 236  Bit Score: 36.99  E-value: 4.24e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 193090209  45 EDRHLTILMLTAGYRTEYVPNAIAATVVPDKLIPYLRQQLRWA 87
Cdd:cd06435  183 EDSELGLRMHEAGYIGVYVAQSYGHGLIPDTFEAFKKQRFRWA 225
Glyco_transf_21 pfam13506
Glycosyl transferase family 21; This is a family of ceramide beta-glucosyltransferases - EC:2. ...
 2-88 6.36e-03

Glycosyl transferase family 21; This is a family of ceramide beta-glucosyltransferases - EC:2.4.1.80.


Pssm-ID: 433264 [Multi-domain]  Cd Length: 173  Bit Score: 35.72  E-value: 6.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193090209    2 AQGRFGAVMCCCGPCAIYRRSALLRLLDkyetqfFRGKQSDFGEDRHLTILMLTAGYRTEYVPNAIAATVVP--DKLIPY 79
Cdd:pfam13506  91 LQAALSGIGFAVGMSMAFRRADLERIGG------FEALADYLAEDYALGKLLRAAGLKVVLSPRPILQTSGPrrTSFRAF 164


                  ....*....
gi 193090209   80 LRQQLRWAR 88
Cdd:pfam13506 165 MARQLRWAR 173
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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