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Conserved domains on  [gi|193075653|gb|ACF08730|]
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glutamate decarboxylase 1 variant GAD67NT [Rattus norvegicus]

Protein Classification

PLP-dependent decarboxylase( domain architecture ID 10447228)

PLP-dependent decarboxylase such as DOPA decarboxylase, glutamate decarboxylase, and histidine decarboxylase

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Pyridoxal_deC pfam00282
Pyridoxal-dependent decarboxylase conserved domain;
1-368 0e+00

Pyridoxal-dependent decarboxylase conserved domain;


:

Pssm-ID: 395219  Cd Length: 373  Bit Score: 520.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653    1 MEGFNLELSDHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQIT 79
Cdd:pfam00282   5 KPLLPLAAPIIPEPELQIDGDIRRNLMPGVTTWHsPHFHAYMPTGNSYPSLLGDMLTDAINCNGFTWESSPACTELENVV 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653   80 LKKMREIIGWSN----KDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-----KLVLFTSEHSHYSIKKAGAA 150
Cdd:pfam00282  85 MNWLGEMLGLPAeflgQEGGGVLQPGSSESNLLALLAARTKWIKRMKAAGKPADSsgilaKLVAYTSDQAHSSIEKAALY 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  151 LGFGtdnVILIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGL 230
Cdd:pfam00282 165 GGVK---LREIPSDDNGKMRGMDLEKAIEEDKENGLIPFFVVATLGTTGSGAFDDLQELGDICAKHNLWLHVDAAYGGSA 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  231 LMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKqydvSYDTGDKAIQCGRHVD 310
Cdd:pfam00282 242 FICPEFRHWLFGIERADSITFNPHKWMLVLLDCSAVWVKDKEALQQAFQFNPLYLGHTDS----AYDTGHKQIPLSRRFR 317
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 193075653  311 IFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFngEPEHTNVCFWYI 368
Cdd:pfam00282 318 ILKLWFVIRSLGVEGLQNQIRRHVELAQYLEALIRKDGRFEICA--EVGLGLVCFRLK 373
 
Name Accession Description Interval E-value
Pyridoxal_deC pfam00282
Pyridoxal-dependent decarboxylase conserved domain;
1-368 0e+00

Pyridoxal-dependent decarboxylase conserved domain;


Pssm-ID: 395219  Cd Length: 373  Bit Score: 520.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653    1 MEGFNLELSDHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQIT 79
Cdd:pfam00282   5 KPLLPLAAPIIPEPELQIDGDIRRNLMPGVTTWHsPHFHAYMPTGNSYPSLLGDMLTDAINCNGFTWESSPACTELENVV 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653   80 LKKMREIIGWSN----KDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-----KLVLFTSEHSHYSIKKAGAA 150
Cdd:pfam00282  85 MNWLGEMLGLPAeflgQEGGGVLQPGSSESNLLALLAARTKWIKRMKAAGKPADSsgilaKLVAYTSDQAHSSIEKAALY 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  151 LGFGtdnVILIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGL 230
Cdd:pfam00282 165 GGVK---LREIPSDDNGKMRGMDLEKAIEEDKENGLIPFFVVATLGTTGSGAFDDLQELGDICAKHNLWLHVDAAYGGSA 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  231 LMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKqydvSYDTGDKAIQCGRHVD 310
Cdd:pfam00282 242 FICPEFRHWLFGIERADSITFNPHKWMLVLLDCSAVWVKDKEALQQAFQFNPLYLGHTDS----AYDTGHKQIPLSRRFR 317
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 193075653  311 IFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFngEPEHTNVCFWYI 368
Cdd:pfam00282 318 ILKLWFVIRSLGVEGLQNQIRRHVELAQYLEALIRKDGRFEICA--EVGLGLVCFRLK 373
DOPA_deC_like cd06450
DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
37-440 1.20e-159

DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.


Pssm-ID: 99743 [Multi-domain]  Cd Length: 345  Bit Score: 454.35  E-value: 1.20e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  37 FFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIIGWSNKDGDGIFSPGGAISNMYSIMAARYK 116
Cdd:cd06450    1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 117 YFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGfgtDNVILIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAG 196
Cdd:cd06450   81 ARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD---VKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAG 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 197 TTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKekgilqg 276
Cdd:cd06450  158 TTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR------- 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 277 cnqmcagylfqpdkqydvsydtgdkaiqcgrhvdIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEmvFNG 356
Cdd:cd06450  231 ----------------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFE--LLG 274
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 357 EPEHTNVCFWYIPQSlrgvpdsperreKLHRVAPKIKALMMESGTTMVGYQPQGDKaNFFRMVISNPAATQSDIDFLIEE 436
Cdd:cd06450  275 EPNLSLVCFRLKPSV------------KLDELNYDLSDRLNERGGWHVPATTLGGP-NVLRFVVTNPLTTRDDADALLED 341

                 ....
gi 193075653 437 IERL 440
Cdd:cd06450  342 IERA 345
GadA COG0076
Glutamate or tyrosine decarboxylase or a related PLP-dependent protein [Amino acid transport ...
2-443 2.42e-133

Glutamate or tyrosine decarboxylase or a related PLP-dependent protein [Amino acid transport and metabolism]; Glutamate or tyrosine decarboxylase or a related PLP-dependent protein is part of the Pathway/BioSystem: Pantothenate/CoA biosynthesis


Pssm-ID: 439846 [Multi-domain]  Cd Length: 460  Bit Score: 391.89  E-value: 2.42e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653   2 EGFNLELSDHPESLEQILVDCRDT-LKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITL 80
Cdd:COG0076   34 AALDEPLPEEGLPPEEALAELEDLvLPGSVDWNHPRFLAFVTGGTTPAALAADLLASALNQNMGDWDTSPAATELEREVV 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  81 KKMREIIGWSnKDGDGIFSPGGAISNMYSIMAARYKYFPE-VKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 159
Cdd:COG0076  114 RWLADLLGLP-EGAGGVFTSGGTEANLLALLAARDRALARrVRAEGLPGAPRPRIVVSEEAHSSVDKAARLLGLGRDALR 192
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 160 LIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHK 239
Cdd:COG0076  193 KVPVDEDGRMDPDALEAAIDEDRAAGLNPIAVVATAGTTNTGAIDPLAEIADIAREHGLWLHVDAAYGGFALPSPELRHL 272
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 240 LSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDkqyDVSYDTGDKAIQCGRHVDIFKFWLMWK 319
Cdd:COG0076  273 LDGIERADSITVDPHKWLYVPYGCGAVLVRDPELLREAFSFHASYLGPAD---DGVPNLGDYTLELSRRFRALKLWATLR 349
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 320 AKGTVGFENQINKCLELAEYLYAKIKNREEFEMVfnGEPEHTNVCFWYIPqslrgvPDSPERREKLHRVApkikALMMES 399
Cdd:COG0076  350 ALGREGYRELIERCIDLARYLAEGIAALPGFELL--APPELNIVCFRYKP------AGLDEEDALNYALR----DRLRAR 417
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 193075653 400 GTTMVGYQPQGDKANfFRMVISNPAATQSDIDFLIEEIERLGQD 443
Cdd:COG0076  418 GRAFLSPTKLDGRVV-LRLVVLNPRTTEDDVDALLDDLREAAAE 460
PLN02590 PLN02590
probable tyrosine decarboxylase
10-369 2.51e-38

probable tyrosine decarboxylase


Pssm-ID: 178200 [Multi-domain]  Cd Length: 539  Bit Score: 146.01  E-value: 2.51e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  10 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIIG 88
Cdd:PLN02590 105 ERPESLKELLDDVSKKIMPGITHWQsPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQ 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  89 W-----SNKDGDGIFSPGGAISNMYSIMAARYKYFPEVktkGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKC 163
Cdd:PLN02590 185 LpdhflSTGNGGGVIQGTGCEAVLVVVLAARDRILKKV---GKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKT 261
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 164 NERGK--IIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLS 241
Cdd:PLN02590 262 DSSTNygMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFID 341
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 242 GIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK 321
Cdd:PLN02590 342 GIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLY 421
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 193075653 322 GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNgePEHTNVCFWYIP 369
Cdd:PLN02590 422 GSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT--RYFSLVCFRLAP 467
 
Name Accession Description Interval E-value
Pyridoxal_deC pfam00282
Pyridoxal-dependent decarboxylase conserved domain;
1-368 0e+00

Pyridoxal-dependent decarboxylase conserved domain;


Pssm-ID: 395219  Cd Length: 373  Bit Score: 520.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653    1 MEGFNLELSDHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQIT 79
Cdd:pfam00282   5 KPLLPLAAPIIPEPELQIDGDIRRNLMPGVTTWHsPHFHAYMPTGNSYPSLLGDMLTDAINCNGFTWESSPACTELENVV 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653   80 LKKMREIIGWSN----KDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-----KLVLFTSEHSHYSIKKAGAA 150
Cdd:pfam00282  85 MNWLGEMLGLPAeflgQEGGGVLQPGSSESNLLALLAARTKWIKRMKAAGKPADSsgilaKLVAYTSDQAHSSIEKAALY 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  151 LGFGtdnVILIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGL 230
Cdd:pfam00282 165 GGVK---LREIPSDDNGKMRGMDLEKAIEEDKENGLIPFFVVATLGTTGSGAFDDLQELGDICAKHNLWLHVDAAYGGSA 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  231 LMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKqydvSYDTGDKAIQCGRHVD 310
Cdd:pfam00282 242 FICPEFRHWLFGIERADSITFNPHKWMLVLLDCSAVWVKDKEALQQAFQFNPLYLGHTDS----AYDTGHKQIPLSRRFR 317
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 193075653  311 IFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFngEPEHTNVCFWYI 368
Cdd:pfam00282 318 ILKLWFVIRSLGVEGLQNQIRRHVELAQYLEALIRKDGRFEICA--EVGLGLVCFRLK 373
DOPA_deC_like cd06450
DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
37-440 1.20e-159

DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.


Pssm-ID: 99743 [Multi-domain]  Cd Length: 345  Bit Score: 454.35  E-value: 1.20e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  37 FFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIIGWSNKDGDGIFSPGGAISNMYSIMAARYK 116
Cdd:cd06450    1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 117 YFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGfgtDNVILIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAG 196
Cdd:cd06450   81 ARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD---VKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAG 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 197 TTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKekgilqg 276
Cdd:cd06450  158 TTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR------- 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 277 cnqmcagylfqpdkqydvsydtgdkaiqcgrhvdIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEmvFNG 356
Cdd:cd06450  231 ----------------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFE--LLG 274
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 357 EPEHTNVCFWYIPQSlrgvpdsperreKLHRVAPKIKALMMESGTTMVGYQPQGDKaNFFRMVISNPAATQSDIDFLIEE 436
Cdd:cd06450  275 EPNLSLVCFRLKPSV------------KLDELNYDLSDRLNERGGWHVPATTLGGP-NVLRFVVTNPLTTRDDADALLED 341

                 ....
gi 193075653 437 IERL 440
Cdd:cd06450  342 IERA 345
GadA COG0076
Glutamate or tyrosine decarboxylase or a related PLP-dependent protein [Amino acid transport ...
2-443 2.42e-133

Glutamate or tyrosine decarboxylase or a related PLP-dependent protein [Amino acid transport and metabolism]; Glutamate or tyrosine decarboxylase or a related PLP-dependent protein is part of the Pathway/BioSystem: Pantothenate/CoA biosynthesis


Pssm-ID: 439846 [Multi-domain]  Cd Length: 460  Bit Score: 391.89  E-value: 2.42e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653   2 EGFNLELSDHPESLEQILVDCRDT-LKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITL 80
Cdd:COG0076   34 AALDEPLPEEGLPPEEALAELEDLvLPGSVDWNHPRFLAFVTGGTTPAALAADLLASALNQNMGDWDTSPAATELEREVV 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  81 KKMREIIGWSnKDGDGIFSPGGAISNMYSIMAARYKYFPE-VKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 159
Cdd:COG0076  114 RWLADLLGLP-EGAGGVFTSGGTEANLLALLAARDRALARrVRAEGLPGAPRPRIVVSEEAHSSVDKAARLLGLGRDALR 192
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 160 LIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHK 239
Cdd:COG0076  193 KVPVDEDGRMDPDALEAAIDEDRAAGLNPIAVVATAGTTNTGAIDPLAEIADIAREHGLWLHVDAAYGGFALPSPELRHL 272
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 240 LSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDkqyDVSYDTGDKAIQCGRHVDIFKFWLMWK 319
Cdd:COG0076  273 LDGIERADSITVDPHKWLYVPYGCGAVLVRDPELLREAFSFHASYLGPAD---DGVPNLGDYTLELSRRFRALKLWATLR 349
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 320 AKGTVGFENQINKCLELAEYLYAKIKNREEFEMVfnGEPEHTNVCFWYIPqslrgvPDSPERREKLHRVApkikALMMES 399
Cdd:COG0076  350 ALGREGYRELIERCIDLARYLAEGIAALPGFELL--APPELNIVCFRYKP------AGLDEEDALNYALR----DRLRAR 417
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 193075653 400 GTTMVGYQPQGDKANfFRMVISNPAATQSDIDFLIEEIERLGQD 443
Cdd:COG0076  418 GRAFLSPTKLDGRVV-LRLVVLNPRTTEDDVDALLDDLREAAAE 460
PLN02590 PLN02590
probable tyrosine decarboxylase
10-369 2.51e-38

probable tyrosine decarboxylase


Pssm-ID: 178200 [Multi-domain]  Cd Length: 539  Bit Score: 146.01  E-value: 2.51e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  10 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIIG 88
Cdd:PLN02590 105 ERPESLKELLDDVSKKIMPGITHWQsPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQ 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  89 W-----SNKDGDGIFSPGGAISNMYSIMAARYKYFPEVktkGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKC 163
Cdd:PLN02590 185 LpdhflSTGNGGGVIQGTGCEAVLVVVLAARDRILKKV---GKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKT 261
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 164 NERGK--IIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLS 241
Cdd:PLN02590 262 DSSTNygMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFID 341
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 242 GIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK 321
Cdd:PLN02590 342 GIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLY 421
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 193075653 322 GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNgePEHTNVCFWYIP 369
Cdd:PLN02590 422 GSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT--RYFSLVCFRLAP 467
PLN02880 PLN02880
tyrosine decarboxylase
10-369 4.09e-37

tyrosine decarboxylase


Pssm-ID: 215475 [Multi-domain]  Cd Length: 490  Bit Score: 141.58  E-value: 4.09e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  10 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIIG 88
Cdd:PLN02880  57 NQPETLDQVLDDVQAKILPGVTHWQsPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLN 136
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  89 -----WSNKDGDGIFSPGGAISNMYSIMAARYKYfpeVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIK- 162
Cdd:PLN02880 137 lpeqfLSTGNGGGVIQGTASEAVLVVLLAARDRV---LRKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKt 213
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 163 -CNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLS 241
Cdd:PLN02880 214 dSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYID 293
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 242 GIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK 321
Cdd:PLN02880 294 GVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLY 373
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 193075653 322 GTVGFENQINKCLELAEYLYAKIKNREEFEMVfnGEPEHTNVCFWYIP 369
Cdd:PLN02880 374 GVENLQSYIRNHIKLAKEFEQLVAQDSRFEVV--TPRIFSLVCFRLVP 419
PRK02769 PRK02769
histidine decarboxylase; Provisional
96-348 1.12e-23

histidine decarboxylase; Provisional


Pssm-ID: 235068 [Multi-domain]  Cd Length: 380  Bit Score: 102.04  E-value: 1.12e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  96 GIFSPGGAISNMYSIMAARyKYFPEVktkgmaavpklVLFTSEHSHYSIKKAGAALGFgTDNVILIKCNerGKIIPADLE 175
Cdd:PRK02769  87 GYITNGGTEGNLYGCYLAR-ELFPDG-----------TLYYSKDTHYSVSKIARLLRI-KSRVITSLPN--GEIDYDDLI 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 176 AKILDAKQKgfvPLYVNATAGTTVYGAFDPIQEIADICEKYNL---WLHVDAAWGGGLLMSRKHRHKLSGIERANSVTWN 252
Cdd:PRK02769 152 SKIKENKNQ---PPIIFANIGTTMTGAIDNIKEIQEILKKIGIddyYIHADAALSGMILPFVNNPPPFSFADGIDSIAIS 228
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 253 PHKMMGVLLQCSAILVKEKGIlqgcnqmcagylfqpDKQY-DVSY-DTGDKAIQCGR--HVDIfkfwLMWKA---KGTVG 325
Cdd:PRK02769 229 GHKFIGSPMPCGIVLAKKKYV---------------ERISvDVDYiGSRDQTISGSRngHTAL----LLWAAirsLGSKG 289
                        250       260
                 ....*....|....*....|...
gi 193075653 326 FENQINKCLELAEYLYAKIKNRE 348
Cdd:PRK02769 290 LRQRVQHCLDMAQYAVDRLQANG 312
PLN03032 PLN03032
serine decarboxylase; Provisional
96-345 3.99e-12

serine decarboxylase; Provisional


Pssm-ID: 166673 [Multi-domain]  Cd Length: 374  Bit Score: 67.54  E-value: 3.99e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  96 GIFSPGGAISNMYSIMAARYKYfpevktkgmaavPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIkcnERGKIIPADLE 175
Cdd:PLN03032  88 GYITTCGTEGNLHGILVGREVF------------PDGILYASRESHYSVFKAARMYRMEAVKVPTL---PSGEIDYDDLE 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 176 AKILDAKQKgfvPLYVNATAGTTVYGAFDPIQEIADICEKYN-----LWLHVDAAWGGGLLMSRKHRHKLSGIERANSVT 250
Cdd:PLN03032 153 RALAKNRDK---PAILNVNIGTTVKGAVDDLDRILRILKELGytedrFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVS 229
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 251 WNPHKMMGVLLQCSAILVKEKGILQgcnqmcagylFQPDKQYDVSYDTGDKAIQCGrHVDIFkFWLMWKAKGTVGFENQI 330
Cdd:PLN03032 230 VSGHKFLGCPMPCGVALTRKKHVKA----------LSQNVEYLNSRDATIMGSRNG-HAPLY-LWYTLRRKGYRGIKRDV 297
                        250
                 ....*....|....*
gi 193075653 331 NKCLELAEYLYAKIK 345
Cdd:PLN03032 298 QHCMRNAHYLKDRLT 312
PLN02263 PLN02263
serine decarboxylase
130-346 5.56e-12

serine decarboxylase


Pssm-ID: 177904 [Multi-domain]  Cd Length: 470  Bit Score: 67.53  E-value: 5.56e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 130 PKLVLFTSEHSHYSIKKAGAALGFGtdnVILIKCNERGKIIPADLEAKILDAKQKgfvPLYVNATAGTTVYGAFDPIQEI 209
Cdd:PLN02263 177 PDGILYASRESHYSVFKAARMYRME---CVKVDTLVSGEIDCADFKAKLLANKDK---PAIINVNIGTTVKGAVDDLDLV 250
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 210 ADICEKY-----NLWLHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGIlqgcNQMCAgy 284
Cdd:PLN02263 251 IKTLEECgfsqdRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI----NVLSS-- 324
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 193075653 285 lfqpdkqyDVSY-DTGDKAIQCGR--HVDIFkFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN 346
Cdd:PLN02263 325 --------NVEYlASRDATIMGSRngHAPIF-LWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLRE 380
AAT_I cd01494
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP) ...
91-269 8.62e-09

Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).


Pssm-ID: 99742 [Multi-domain]  Cd Length: 170  Bit Score: 54.70  E-value: 8.62e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  91 NKDGDGIFSPGGAISNMYSIMAARykyfpevktkgmaaVPKLVLFTSEHSHYSIKKAGAALGFGtdNVILIKCNERGKii 170
Cdd:cd01494   15 PGNDKAVFVPSGTGANEAALLALL--------------GPGDEVIVDANGHGSRYWVAAELAGA--KPVPVPVDDAGY-- 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 171 pADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHrhkLSGIERANSVT 250
Cdd:cd01494   77 -GGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGV---LIPEGGADVVT 152
                        170
                 ....*....|....*....
gi 193075653 251 WNPHKMMGVlLQCSAILVK 269
Cdd:cd01494  153 FSLHKNLGG-EGGGVVIVK 170
Aminotran_5 pfam00266
Aminotransferase class-V; This domain is found in amino transferases, and other enzymes ...
74-364 5.49e-07

Aminotransferase class-V; This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-.


Pssm-ID: 425567 [Multi-domain]  Cd Length: 368  Bit Score: 51.48  E-value: 5.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653   74 LMEQiTLKKMREIIGWSNKDgDGIFSPGGAisnmYSIMAARYKYFPEVKTKGmaavpKLVLFTSEHsHYSIKKAGAALGF 153
Cdd:pfam00266  44 AYEE-AREKVAEFINAPSND-EIIFTSGTT----EAINLVALSLGRSLKPGD-----EIVITEMEH-HANLVPWQELAKR 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  154 GTDNVILIKCNERGKIIPADLEAKIlDAKQKgfvplYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGgglLMS 233
Cdd:pfam00266 112 TGARVRVLPLDEDGLLDLDELEKLI-TPKTK-----LVAITHVSNVTGTIQPVPEIGKLAHQYGALVLVDAAQA---IGH 182
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  234 RKHRHKLSGIERANSVTwnpHKMM-----GVLLQCSAILVKEKGILQGcnqmcAGYLFQPDKQYDVSYDTGDK------- 301
Cdd:pfam00266 183 RPIDVQKLGVDFLAFSG---HKLYgptgiGVLYGRRDLLEKMPPLLGG-----GGMIETVSLQESTFADAPWKfeagtpn 254
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 193075653  302 ---AIQCGRHVDifkfWLMwkakgTVGFENQINKCLELAEYLYAKIKNREEFEmvFNGEPEHTNVC 364
Cdd:pfam00266 255 iagIIGLGAALE----YLS-----EIGLEAIEKHEHELAQYLYERLLSLPGIR--LYGPERRASII 309
Orn_deC_like cd00615
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
198-270 5.44e-06

Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.


Pssm-ID: 99739 [Multi-domain]  Cd Length: 294  Bit Score: 48.01  E-value: 5.44e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 193075653 198 TVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMS---RKHRHKLSGIERANSVtwnpHKMMGVLLQCSAILVKE 270
Cdd:cd00615  164 TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHpilPSSAAMAGADIVVQST----HKTLPALTQGSMIHVKG 235
TA_like cd06502
Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP) ...
84-225 1.20e-05

Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.


Pssm-ID: 99748 [Multi-domain]  Cd Length: 338  Bit Score: 46.94  E-value: 1.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  84 REIIGwsnkDGDGIFSPGGAISNMYSIMAarykyfpevktkgMAAVPKLVLfTSEHSHYSIKKAGAALGFGTDNVILIKc 163
Cdd:cd06502   42 AELFG----KEAALFVPSGTAANQLALAA-------------HTQPGGSVI-CHETAHIYTDEAGAPEFLSGVKLLPVP- 102
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 193075653 164 NERGKIIPADLEAKILDAKQKGFVPLYV----NATAGTTVYgafdPIQEIADICE---KYNLWLHVDAA 225
Cdd:cd06502  103 GENGKLTPEDLEAAIRPRDDIHFPPPSLvsleNTTEGGTVY----PLDELKAISAlakENGLPLHLDGA 167
NifS COG1104
Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family [Amino ...
134-225 1.68e-04

Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family [Amino acid transport and metabolism];


Pssm-ID: 440721 [Multi-domain]  Cd Length: 381  Bit Score: 43.50  E-value: 1.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 134 LFTS--EHShySIKKAGAAL---GFgtdNVILIKCNERGKIIPADLEAKIldAKQKGFVPL-YVNATAGTtVYgafdPIQ 207
Cdd:COG1104   93 IITSaiEHP--AVLETARFLekeGF---EVTYLPVDEDGRVDLEALEAAL--RPDTALVSVmHANNETGT-IQ----PIA 160
                         90
                 ....*....|....*...
gi 193075653 208 EIADICEKYNLWLHVDAA 225
Cdd:COG1104  161 EIAEIAKEHGVLFHTDAV 178
LdcC COG1982
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
198-273 2.84e-04

Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];


Pssm-ID: 441585 [Multi-domain]  Cd Length: 486  Bit Score: 43.18  E-value: 2.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 198 TVYGAFDPIQEIADICEKYNLWLHVDAAWGGgllmsrkHRH-----KLSGIER-----ANSVtwnpHKMMGVLLQCSAIL 267
Cdd:COG1982  171 TYYGVCYDLKAIAELAHEHGIPVLVDEAHGA-------HFGfhpdlPRSAMEAgadlvVQST----HKTLGALTQSSMLH 239

                 ....*.
gi 193075653 268 VKEKGI 273
Cdd:COG1982  240 VKGGRV 245
Beta_elim_lyase pfam01212
Beta-eliminating lyase;
82-225 1.30e-03

Beta-eliminating lyase;


Pssm-ID: 426128 [Multi-domain]  Cd Length: 288  Bit Score: 40.66  E-value: 1.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653   82 KMREIIGwsnKDGdGIFSPGGAISNMYSIMAArykyfpevktkgmaAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILI 161
Cdd:pfam01212  40 RVAELFG---KEA-ALFVPSGTAANQLALMAH--------------CQRGDEVICGEPAHIHFDETGGHAELGGVQPRPL 101
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  162 KCNERGKIIPADLEAKILDAKQKGFVPLYV------NATAGTTVYgAFDPIQEIADICEKYNLWLHVDAA 225
Cdd:pfam01212 102 DGDEAGNMDLEDLEAAIREVGADIFPPTGLislentHNSAGGQVV-SLENLREIAALAREHGIPVHLDGA 170
KBL_like cd06454
KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate ...
171-231 1.71e-03

KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.


Pssm-ID: 99747 [Multi-domain]  Cd Length: 349  Bit Score: 40.24  E-value: 1.71e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 193075653 171 PADLEAKILDAKQKgFVPLYVnATAGttVY---GAFDPIQEIADICEKYNLWLHVDAAWGGGLL 231
Cdd:cd06454  117 MEDLEKLLREARRP-YGKKLI-VTEG--VYsmdGDIAPLPELVDLAKKYGAILFVDEAHSVGVY 176
PLN02651 PLN02651
cysteine desulfurase
97-225 2.91e-03

cysteine desulfurase


Pssm-ID: 178257 [Multi-domain]  Cd Length: 364  Bit Score: 39.64  E-value: 2.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653  97 IFSPGGAISNMYSIMAArYKYFPEVKtkgmaavPKLVLFTSEHShySIKKAGAALGFGTDNVILIKCNERGKIIPADLEA 176
Cdd:PLN02651  64 IFTSGATESNNLAIKGV-MHFYKDKK-------KHVITTQTEHK--CVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAA 133
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 193075653 177 KILDAkqkgfvplyvnaTAGTTV------YGAFDPIQEIADICEKYNLWLHVDAA 225
Cdd:PLN02651 134 AIRPD------------TALVSVmavnneIGVIQPVEEIGELCREKKVLFHTDAA 176
CsdA COG0520
Selenocysteine lyase/Cysteine desulfurase [Amino acid transport and metabolism];
133-225 5.87e-03

Selenocysteine lyase/Cysteine desulfurase [Amino acid transport and metabolism];


Pssm-ID: 440286 [Multi-domain]  Cd Length: 396  Bit Score: 38.58  E-value: 5.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193075653 133 VLFTSEHSHYS--------IKKAGAalgfgtdNVILIKCNERGKIIPADLEAKIlDAKQKgfvplYVNATAGTTVYGAFD 204
Cdd:COG0520  105 EILITEMEHHSnivpwqelAERTGA-------EVRVIPLDEDGELDLEALEALL-TPRTK-----LVAVTHVSNVTGTVN 171
                         90       100
                 ....*....|....*....|.
gi 193075653 205 PIQEIADICEKYNLWLHVDAA 225
Cdd:COG0520  172 PVKEIAALAHAHGALVLVDGA 192
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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