|
Name |
Accession |
Description |
Interval |
E-value |
| ATP6 |
MTH00157 |
ATP synthase F0 subunit 6; Provisional |
2-117 |
3.00e-50 |
|
ATP synthase F0 subunit 6; Provisional
Pssm-ID: 214441 Cd Length: 223 Bit Score: 158.41 E-value: 3.00e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 2 FNLSLNWLSTFLGLLMIPSIYWLMPSRYNIFWNSILLTLHKEFKTLLGPSSKnGSTFIFISLFSLILFNNFMGLFPYIFT 81
Cdd:MTH00157 15 FNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNK-GSTLIFISLFSFILFNNFLGLFPYIFT 93
|
90 100 110
....*....|....*....|....*....|....*.
gi 186911199 82 STSHLTLTLSLALPLWLSFMIYGWINHTQHMFAHLV 117
Cdd:MTH00157 94 STSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLV 129
|
|
| ATP_synt_6_or_A |
TIGR01131 |
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ... |
1-117 |
1.23e-18 |
|
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 273458 Cd Length: 226 Bit Score: 77.25 E-value: 1.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 1 IFNLSLNWLSTFLGLLMI----PSIYWLMPSRYNIFWNSILLTLHKEFKTLLGPSSKNGSTFIFiSLFSLILFNNFMGLF 76
Cdd:TIGR01131 12 LFSLTLLSLILLLSLLIFlissSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIF-TLFLFILISNLLGLI 90
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 186911199 77 PYIFTSTSHLTLTLSLALPLWLSFMIYGWINHTQHMFAHLV 117
Cdd:TIGR01131 91 PYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLV 131
|
|
| ATP-synt_A |
pfam00119 |
ATP synthase A chain; |
8-108 |
3.64e-07 |
|
ATP synthase A chain;
Pssm-ID: 459679 [Multi-domain] Cd Length: 216 Bit Score: 46.33 E-value: 3.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 8 WLSTFLGLLMIPSIYW----LMPSRYNIFWNSILLTLHKEFKTLLGPSSKNGSTFIFISLFSLILFNNFMGLF---PYIF 80
Cdd:pfam00119 5 LIVALILLLFLLLATRktkkLVPGRLQNFVEMLVEFVDNIVKDNIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGF 84
|
90 100
....*....|....*....|....*...
gi 186911199 81 TSTSHLTLTLSLALPLWLSFMIYGWINH 108
Cdd:pfam00119 85 TVTADINVTLALALIVFLLVHYYGIKKH 112
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| ATP6 |
MTH00157 |
ATP synthase F0 subunit 6; Provisional |
2-117 |
3.00e-50 |
|
ATP synthase F0 subunit 6; Provisional
Pssm-ID: 214441 Cd Length: 223 Bit Score: 158.41 E-value: 3.00e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 2 FNLSLNWLSTFLGLLMIPSIYWLMPSRYNIFWNSILLTLHKEFKTLLGPSSKnGSTFIFISLFSLILFNNFMGLFPYIFT 81
Cdd:MTH00157 15 FNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNK-GSTLIFISLFSFILFNNFLGLFPYIFT 93
|
90 100 110
....*....|....*....|....*....|....*.
gi 186911199 82 STSHLTLTLSLALPLWLSFMIYGWINHTQHMFAHLV 117
Cdd:MTH00157 94 STSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLV 129
|
|
| ATP6 |
MTH00176 |
ATP synthase F0 subunit 6; Provisional |
5-117 |
4.64e-20 |
|
ATP synthase F0 subunit 6; Provisional
Pssm-ID: 214449 Cd Length: 229 Bit Score: 81.23 E-value: 4.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 5 SLNWLSTFLGLLMIPSIYWLMPSRYNIFWNsILLTLHKEFKTLLGPSSKNGSTFIFISLFSLILFNNFMGLFPYIFTSTS 84
Cdd:MTH00176 21 SLSWITLLLFLLLMPSSVWFCPSKLQVFML-MFSTFLPEMILRSNGSYILGSASIIISLFILVMSLNLSGLIPYVFTSTS 99
|
90 100 110
....*....|....*....|....*....|...
gi 186911199 85 HLTLTLSLALPLWLSFMIYGWINHTQHMFAHLV 117
Cdd:MTH00176 100 HLVITLSLALPLWLGVILSGFINNFYSRLSHLV 132
|
|
| ATP_synt_6_or_A |
TIGR01131 |
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ... |
1-117 |
1.23e-18 |
|
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 273458 Cd Length: 226 Bit Score: 77.25 E-value: 1.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 1 IFNLSLNWLSTFLGLLMI----PSIYWLMPSRYNIFWNSILLTLHKEFKTLLGPSSKNGSTFIFiSLFSLILFNNFMGLF 76
Cdd:TIGR01131 12 LFSLTLLSLILLLSLLIFlissSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIF-TLFLFILISNLLGLI 90
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 186911199 77 PYIFTSTSHLTLTLSLALPLWLSFMIYGWINHTQHMFAHLV 117
Cdd:TIGR01131 91 PYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLV 131
|
|
| ATP6 |
MTH00005 |
ATP synthase F0 subunit 6; Provisional |
5-117 |
7.58e-14 |
|
ATP synthase F0 subunit 6; Provisional
Pssm-ID: 164583 Cd Length: 231 Bit Score: 64.75 E-value: 7.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 5 SLNWLSTFLGLLMIPSIYWLMPSRYNIFWNSILLTLHKEFKTLLGPSSKNGSTFIfISLFSLILFNNFMGLFPYIFTSTS 84
Cdd:MTH00005 23 TAFWAFNFSIILLLSSSFWITPNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLI-SALFTMIILMNLSGLLPYVFSTSS 101
|
90 100 110
....*....|....*....|....*....|...
gi 186911199 85 HLTLTLSLALPLWLSFMIYGWINHTQHMFAHLV 117
Cdd:MTH00005 102 HLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLL 134
|
|
| ATP6 |
MTH00173 |
ATP synthase F0 subunit 6; Provisional |
8-117 |
7.14e-13 |
|
ATP synthase F0 subunit 6; Provisional
Pssm-ID: 214448 Cd Length: 231 Bit Score: 62.19 E-value: 7.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 8 WLSTFLGLLMIPSIYWLMPSRYNIFWNSILLTLHKEFKTLLGpSSKNGSTFIFISLFSLILFNNFMGLFPYIFTSTSHLT 87
Cdd:MTH00173 24 WLLSLMSLFFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSG-LNLGGFSLLLSSLFLFLISLNLSGLLPFVFSVTSHLA 102
|
90 100 110
....*....|....*....|....*....|
gi 186911199 88 LTLSLALPLWLSFMIYGWINHTQHMFAHLV 117
Cdd:MTH00173 103 FTFSLALPLWLSLILSGLFYNPSKSLAGLV 132
|
|
| ATP6 |
MTH00035 |
ATP synthase F0 subunit 6; Validated |
1-117 |
1.11e-11 |
|
ATP synthase F0 subunit 6; Validated
Pssm-ID: 177110 Cd Length: 229 Bit Score: 58.83 E-value: 1.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 1 IFNLSLNWLSTFLGL---LMIPSIYWLmPSRYNIFWNSILLTLhkeFKTLLGPSSKNGSTFI--FISLFSLILFNNFMGL 75
Cdd:MTH00035 16 ILFIPLTLLSSVIALswlFFINPTNWL-PSRSQSIWLTFRQEI---LKLIFQNTNPNTAPWAglLTTVFILILSINVLGL 91
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 186911199 76 FPYIFTSTSHLTLTLSLALPLWLSFMIYGWINHTQHMFAHLV 117
Cdd:MTH00035 92 FPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLV 133
|
|
| ATP6 |
MTH00120 |
ATP synthase F0 subunit 6; Provisional |
9-116 |
1.44e-10 |
|
ATP synthase F0 subunit 6; Provisional
Pssm-ID: 177181 Cd Length: 227 Bit Score: 55.99 E-value: 1.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 9 LSTFLGLLMIPSIYWLMPS---RYNIFWNSILLTLHKEFKTLLGPSSKNGS--TFIFISLFSLILFNNFMGLFPYIFTST 83
Cdd:MTH00120 17 IPLILLAMLIPALLIPSPKnrlLTNRLTTLQLWLIKLITKQLMLPLNKKGHkwALILTSLMLLLLLINLLGLLPYTFTPT 96
|
90 100 110
....*....|....*....|....*....|...
gi 186911199 84 SHLTLTLSLALPLWLSFMIYGWINHTQHMFAHL 116
Cdd:MTH00120 97 TQLSMNMALAIPLWLATVLTGLRNQPTTSLAHL 129
|
|
| ATP6 |
MTH00179 |
ATP synthase F0 subunit 6; Provisional |
4-116 |
8.94e-10 |
|
ATP synthase F0 subunit 6; Provisional
Pssm-ID: 177230 Cd Length: 227 Bit Score: 53.80 E-value: 8.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 4 LSLNWLSTFLGLLMIPSIYWLMPSRYNIFWNSILLTLHKEF-----KTLLGPSSKNGSTF--IFISLFSLILFNNFMGLF 76
Cdd:MTH00179 10 ESPSLLGIPLLALALLLPWLLFPSLTNRWLNNRLSTLQSWFfgsftFQLMQPINKKGHKWavLFLSLMLFLLTLNLLGLL 89
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 186911199 77 PYIFTSTSHLTLTLSLALPLWLSFMIYGWINHTQHMFAHL 116
Cdd:MTH00179 90 PYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHL 129
|
|
| ATP6 |
MTH00073 |
ATP synthase F0 subunit 6; Provisional |
40-116 |
2.88e-08 |
|
ATP synthase F0 subunit 6; Provisional
Pssm-ID: 177144 Cd Length: 227 Bit Score: 49.58 E-value: 2.88e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 186911199 40 LHKEFKTLLGPSSKNGS--TFIFISLFSLILFNNFMGLFPYIFTSTSHLTLTLSLALPLWLSFMIYGWINHTQHMFAHL 116
Cdd:MTH00073 51 LQNFTKQLMLPLNTPGHkwALILTSLMVFLITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHL 129
|
|
| ATP6 |
MTH00132 |
ATP synthase F0 subunit 6; Provisional |
11-116 |
2.98e-08 |
|
ATP synthase F0 subunit 6; Provisional
Pssm-ID: 177190 Cd Length: 227 Bit Score: 49.49 E-value: 2.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 11 TFLGLLMIP---SIYWLM-PSRYNIFWNSILLTLHKEF-----KTLLGPSSKNGSTF--IFISLFSLILFNNFMGLFPYI 79
Cdd:MTH00132 13 TYLGIPLIAlalTLPWILfPTPTSRWLNNRLLTLQGWFinrftQQLLLPLNVGGHKWalLLTSLMLFLITLNMLGLLPYT 92
|
90 100 110
....*....|....*....|....*....|....*..
gi 186911199 80 FTSTSHLTLTLSLALPLWLSFMIYGWINHTQHMFAHL 116
Cdd:MTH00132 93 FTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHL 129
|
|
| ATP6 |
MTH00172 |
ATP synthase F0 subunit 6; Provisional |
1-104 |
3.29e-07 |
|
ATP synthase F0 subunit 6; Provisional
Pssm-ID: 214447 Cd Length: 232 Bit Score: 46.96 E-value: 3.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 1 IFNLSLNWLSTFLGLLMIPSIYWLMPSRYNIFWNSILLTLHKEFKTLLGPSSKNGSTFIfISLFSLILFNNFMGLFPYIF 80
Cdd:MTH00172 17 LTNSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFI-ISLFFFIVFLNLLGLFPYVF 95
|
90 100
....*....|....*....|....
gi 186911199 81 TSTSHLTLTLSLALPLWLSFMIYG 104
Cdd:MTH00172 96 TPTTHIVVTLGLSFSIIIGVTLAG 119
|
|
| ATP-synt_A |
pfam00119 |
ATP synthase A chain; |
8-108 |
3.64e-07 |
|
ATP synthase A chain;
Pssm-ID: 459679 [Multi-domain] Cd Length: 216 Bit Score: 46.33 E-value: 3.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 8 WLSTFLGLLMIPSIYW----LMPSRYNIFWNSILLTLHKEFKTLLGPSSKNGSTFIFISLFSLILFNNFMGLF---PYIF 80
Cdd:pfam00119 5 LIVALILLLFLLLATRktkkLVPGRLQNFVEMLVEFVDNIVKDNIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGF 84
|
90 100
....*....|....*....|....*...
gi 186911199 81 TSTSHLTLTLSLALPLWLSFMIYGWINH 108
Cdd:pfam00119 85 TVTADINVTLALALIVFLLVHYYGIKKH 112
|
|
| ATP6 |
MTH00101 |
ATP synthase F0 subunit 6; Validated |
63-116 |
6.53e-06 |
|
ATP synthase F0 subunit 6; Validated
Pssm-ID: 177163 Cd Length: 226 Bit Score: 43.02 E-value: 6.53e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 186911199 63 LFSLILF---NNFMGLFPYIFTSTSHLTLTLSLALPLWLSFMIYGWINHTQHMFAHL 116
Cdd:MTH00101 72 LMSLILFigsTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHF 128
|
|
| ATP6 |
MTH00175 |
ATP synthase F0 subunit 6; Provisional |
23-107 |
4.02e-04 |
|
ATP synthase F0 subunit 6; Provisional
Pssm-ID: 177228 Cd Length: 244 Bit Score: 38.06 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 23 WLMPSRYNIFWNSILLTLHKEFKTLLGPSSKNGSTFIFiSLFSLILFNNFMGLFPYIFTSTSHLTLTLSLALPLWLSFMI 102
Cdd:MTH00175 50 KLIPNRWQSIMELIYLNIRSVVHDNLGKSGQKYFPFIL-SLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTL 128
|
....*
gi 186911199 103 YGWIN 107
Cdd:MTH00175 129 LGFLT 133
|
|
| ATP6 |
MTH00174 |
ATP synthase F0 subunit 6; Provisional |
24-117 |
6.39e-04 |
|
ATP synthase F0 subunit 6; Provisional
Pssm-ID: 133799 Cd Length: 252 Bit Score: 37.61 E-value: 6.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186911199 24 LMPSRYNIFWNSILLTLHKEFKTLLGPSSKNGSTFIfISLFSLILFNNFMGLFPYIFTSTSHLTLTLSLALPLWLSFMIY 103
Cdd:MTH00174 59 LVPNRILVGLELIYSHFYTVLKDNLGNKGGNYLAFV-LSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLA 137
|
90
....*....|....
gi 186911199 104 GWINHTQHMFAHLV 117
Cdd:MTH00174 138 GLITFRFNFFSILM 151
|
|
|