MADS-box transcription factor APETALA1, partial [Eucalyptus occidentalis]
MADS-box domain-containing protein( domain architecture ID 10210286)
MADS (MCM1, AGAMOUS, DEFICIENS, and SRF, serum response factor)-box domain-containing protein functions as a transcription factor and may be involved in various important aspects of development and differentiation
List of domain hits
Name | Accession | Description | Interval | E-value | |||
K-box | pfam01486 | K-box region; The K-box region is commonly found associated with SRF-type transcription ... |
48-138 | 3.80e-31 | |||
K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. : Pssm-ID: 460228 [Multi-domain] Cd Length: 91 Bit Score: 108.32 E-value: 3.80e-31
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MADS super family | cl00109 | MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic ... |
1-44 | 1.14e-15 | |||
MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. The actual alignment was detected with superfamily member cd00265: Pssm-ID: 469617 [Multi-domain] Cd Length: 77 Bit Score: 67.96 E-value: 1.14e-15
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Name | Accession | Description | Interval | E-value | |||
K-box | pfam01486 | K-box region; The K-box region is commonly found associated with SRF-type transcription ... |
48-138 | 3.80e-31 | |||
K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Pssm-ID: 460228 [Multi-domain] Cd Length: 91 Bit Score: 108.32 E-value: 3.80e-31
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MADS_MEF2_like | cd00265 | MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ... |
1-44 | 1.14e-15 | |||
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238165 [Multi-domain] Cd Length: 77 Bit Score: 67.96 E-value: 1.14e-15
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MADS | smart00432 | MADS domain; |
1-25 | 2.06e-08 | |||
MADS domain; Pssm-ID: 197721 [Multi-domain] Cd Length: 59 Bit Score: 48.71 E-value: 2.06e-08
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SRF-TF | pfam00319 | SRF-type transcription factor (DNA-binding and dimerization domain); |
1-22 | 8.85e-07 | |||
SRF-type transcription factor (DNA-binding and dimerization domain); Pssm-ID: 459760 [Multi-domain] Cd Length: 48 Bit Score: 43.96 E-value: 8.85e-07
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Name | Accession | Description | Interval | E-value | |||
K-box | pfam01486 | K-box region; The K-box region is commonly found associated with SRF-type transcription ... |
48-138 | 3.80e-31 | |||
K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Pssm-ID: 460228 [Multi-domain] Cd Length: 91 Bit Score: 108.32 E-value: 3.80e-31
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MADS_MEF2_like | cd00265 | MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ... |
1-44 | 1.14e-15 | |||
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238165 [Multi-domain] Cd Length: 77 Bit Score: 67.96 E-value: 1.14e-15
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MADS | smart00432 | MADS domain; |
1-25 | 2.06e-08 | |||
MADS domain; Pssm-ID: 197721 [Multi-domain] Cd Length: 59 Bit Score: 48.71 E-value: 2.06e-08
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MADS | cd00120 | MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic ... |
1-24 | 3.86e-07 | |||
MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238067 [Multi-domain] Cd Length: 59 Bit Score: 45.20 E-value: 3.86e-07
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SRF-TF | pfam00319 | SRF-type transcription factor (DNA-binding and dimerization domain); |
1-22 | 8.85e-07 | |||
SRF-type transcription factor (DNA-binding and dimerization domain); Pssm-ID: 459760 [Multi-domain] Cd Length: 48 Bit Score: 43.96 E-value: 8.85e-07
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MADS_SRF_like | cd00266 | SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) ... |
1-37 | 4.71e-06 | |||
SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238166 [Multi-domain] Cd Length: 83 Bit Score: 43.02 E-value: 4.71e-06
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Blast search parameters | ||||
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