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Conserved domains on  [gi|162134407|gb|ABX82667|]
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AMP-activated protein kinase beta 1 non-catalytic subunit, partial [Bos taurus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AMPKBI super family cl08426
5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the ...
 3-40 1.68e-04

5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologs Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain (pfam02922) is sometimes found in proteins belonging to this family.


The actual alignment was detected with superfamily member smart01010:

Pssm-ID: 471827  Cd Length: 100  Bit Score: 34.99  E-value: 1.68e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 162134407     3 SSPPGPYHQEPY---------ISKPEERFKAPPILPPHLLQVILNKD 40
Cdd:smart01010   1 QSPPESYTNEIPacftdddfiEESPEEKWKEPPALPPHLEKVILNTS 47
 
Name Accession Description Interval E-value
AMPKBI smart01010
5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the ...
 3-40 1.68e-04

5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain is sometimes found in proteins belonging to this family.


Pssm-ID: 214973  Cd Length: 100  Bit Score: 34.99  E-value: 1.68e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 162134407     3 SSPPGPYHQEPY---------ISKPEERFKAPPILPPHLLQVILNKD 40
Cdd:smart01010   1 QSPPESYTNEIPacftdddfiEESPEEKWKEPPALPPHLEKVILNTS 47
AMPKBI pfam04739
5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the ...
 23-44 2.35e-04

5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologs Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain (pfam02922) is sometimes found in proteins belonging to this family.


Pssm-ID: 461416  Cd Length: 70  Bit Score: 34.05  E-value: 2.35e-04
                         10        20
                 ....*....|....*....|..
gi 162134407  23 KAPPILPPHLLQVILNKDTGIS 44
Cdd:pfam04739  2 KEPPALPPHLHLTILNKPSSSS 23
 
Name Accession Description Interval E-value
AMPKBI smart01010
5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the ...
 3-40 1.68e-04

5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain is sometimes found in proteins belonging to this family.


Pssm-ID: 214973  Cd Length: 100  Bit Score: 34.99  E-value: 1.68e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 162134407     3 SSPPGPYHQEPY---------ISKPEERFKAPPILPPHLLQVILNKD 40
Cdd:smart01010   1 QSPPESYTNEIPacftdddfiEESPEEKWKEPPALPPHLEKVILNTS 47
AMPKBI pfam04739
5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the ...
 23-44 2.35e-04

5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologs Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain (pfam02922) is sometimes found in proteins belonging to this family.


Pssm-ID: 461416  Cd Length: 70  Bit Score: 34.05  E-value: 2.35e-04
                         10        20
                 ....*....|....*....|..
gi 162134407  23 KAPPILPPHLLQVILNKDTGIS 44
Cdd:pfam04739  2 KEPPALPPHLHLTILNKPSSSS 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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