|
Name |
Accession |
Description |
Interval |
E-value |
| PQQ_ADH_I |
cd10277 |
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); ... |
42-572 |
0e+00 |
|
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.
Pssm-ID: 199835 [Multi-domain] Cd Length: 529 Bit Score: 795.35 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 42 RLTNAQHDPGWLTYYRTYNGQAHSPLKQIDASNVGRLTQAWSYKFPAeLKQGFEATPIVNGRYLFVTTPKDNVYAFDAAT 121
Cdd:cd10277 1 LLNDAKETGNWLTYGRGYNGQRYSPLKQINTDNVKNLVPAWSFSFGG-KQRGQESQPIVNDGVMYVTTSYNRVFAIDAKT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 122 GAQLWKYEPKLGAESFktACCDVVNRGVALYGKNVYVAMLSGEVAALDAQTGTLVWKKQMFEPGLGYAFSLAPLALDGAI 201
Cdd:cd10277 80 GKELWKYKHRLPEDIR--PCCDVVNRGVALYGDKVYFGTLDAHLVALDAKTGKVVWKKKVADYKAGYSMTLAPLVVKGKV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 202 VVGSSGGEYGARGFIAALNANDGSLLWKRFTIPGQGEKHG-DTWPDGMQTHGGAPAWLTGTYDAATRTLYWGVGNPGPWL 280
Cdd:cd10277 158 IVGVSGGEFGVRGFIAALDAETGKEVWRTYTVPGPGEPGStDTWPGDAWKTGGGATWLTGTYDPETNLLYWGVGNPAPWN 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 281 ADLRPGDNLYSDSLLALDPKNGDLKWHYQYTKHDTWDYDGVNTPILATIRYKGQARDAIIHADRNGFFHAIDRDTGKLIY 360
Cdd:cd10277 238 GDLRPGDNLYTSSVLALDPDTGKIKWHYQYTPNDTWDYDGVNEPVLFDYTKNGKPVKALVHADRNGFFYVLDRTNGKLIW 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 361 AEPFVKATSVT-GYTEDGTPIQDPAK-YPKVGTTIDTCPSFLGGKNWWSVSYDPERHLAIVPSLHACMSLSGKSVNYMEG 438
Cdd:cd10277 318 ATPFVKKITWAsIDLKTGRPIYDEDKvPPKKGKTVDFCPSFLGGKNWPPMAYSPDTGLFYVPANHWCMDLTGEPVSYKKG 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 439 LPYLGEGFEIKPePGSEGYGELQAIDVNTGKKVWSHWSKLPWNGGVATTASGLAFSGSLDGHLYAFDVSTGKVLWESPKL 518
Cdd:cd10277 398 AAYLGAGFTIKP-PFEDHIGELQAIDPTTGKKVWEHKTPLPLWGGVLTTAGGLVFTGTPDGYFRAFDAKTGKELWEFQTG 476
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 160346546 519 aSGIIAQPSVFEVDGKEYVAVLAGYGGANPIWGGPMAKAADDVPRGGTLYVFAL 572
Cdd:cd10277 477 -SGIIGPPVTWEVDGKQYVAVLSGWGGAAPLWGGDMAKLLKNVPQGGSLWVFAL 529
|
|
| Gcd |
COG4993 |
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism]; |
52-573 |
0e+00 |
|
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism];
Pssm-ID: 444017 [Multi-domain] Cd Length: 515 Bit Score: 645.29 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 52 WLTYYRTYNGQAHSPLKQIDASNVGRLTQAWSYKFPAELKQGFEATPIVNGRYLFVTTPKDNVYAFDAATGAQLWKYEPK 131
Cdd:COG4993 5 WLAYGGDYAGQRYSPLDQINPDNVKKLKVAWTFSTGDLPERGHEATPLVVDGVLYVCTPHNRVFALDAATGKELWRYDPK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 132 LGAEsfkTACCDVVNRGVALYGKNVYVAMLSGEVAALDAQTGTLVWKKQMFEPGLGYAFSLAPLALDGAIVVGSSGGEYG 211
Cdd:COG4993 85 LPDD---AACCDVVNRGVAYYDGRIFLGTLDGRLVALDAKTGKVCWDVKVGDPKKGYTITSAPLVVKDKVIVGGSGGEFG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 212 ARGFIAALNANDGSLLWKRFTIPGQGEKHGDTWPDG-MQTHGGAPAWLTGTYDAATRTLYWGVGNPGP-WLADLRPGDNL 289
Cdd:COG4993 162 PRGVVRAYDARTGKLVWRFDTIPDPGEPGAETWPPGdTWKRGGGNVWGTMSYDPELGLVYLPTGNPAPdWNGGQRPGDNL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 290 YSDSLLALDPKNGDLKWHYQYTKHDTWDYDGVNTPILATIRYKGQARDAIIHADRNGFFHAIDRDTGKLIYAEPFVK-AT 368
Cdd:COG4993 242 YSSSIVALDADTGELKWHYQTVPHDLWDYDGPNEPILVDLPVDGKTRKALVQATKNGFIYVLDRETGEPLVTQPFVKpPN 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 369 SVTGYTEDG-TPIQDPakYPKVGTTIDTCPSFLGGKNWWSVSYDPERHLAIVPSLHACMSLSGKSVNYMEGLPYLGEGFE 447
Cdd:COG4993 322 WATEIDMWGaTPIQTP--PSLDGKTTLICPGALGGKNWGPAAYDPETGLLYVPANELCMDYELVPREYQAGAPYLGATLT 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 448 IKPEPGSeGYGELQAIDVNTGKKVWSHWSKLPWNGGVATTASGLAFSGSLDGHLYAFDVSTGKVLWESpKLASGIIAQPS 527
Cdd:COG4993 400 MYPCPAP-PWGTLTAIDLNTGKIVWQVPLGFPNWGGPLATAGGLVFIGTLDGYLRAFDAKTGKELWKF-RLPSGGQATPM 477
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 160346546 528 VFEVDGKEYVAVLAGYGGANPIWGGPmakaaddvPRGGTLYVFALD 573
Cdd:COG4993 478 TYEVDGKQYVAVAAGGGGWLGLGLYT--------PQGDYLIAFALP 515
|
|
| PQQ_enz_alc_DH |
TIGR03075 |
PQQ-dependent dehydrogenase, methanol/ethanol family; This protein family has a phylogenetic ... |
33-545 |
0e+00 |
|
PQQ-dependent dehydrogenase, methanol/ethanol family; This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Pssm-ID: 274419 [Multi-domain] Cd Length: 527 Bit Score: 582.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 33 ADYPAVTYQRLTNAQHDPG-WLTYYRTYNGQAHSPLKQIDASNVGRLTQAWSYKFpaELKQGFEATPIVNGRYLFVTTPK 111
Cdd:TIGR03075 1 AAAAAVTNEDLLNDAKDPSdWLTYGGGYAGQRYSPLDQINTDNVKKLQPAWTFSL--GKQRGQESQPLVVDGVMYVTTSY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 112 DNVYAFDAATGAQLWKYEPKLGAESFKTACCDVVNRGVALYGKNVYVAMLSGEVAALDAQTGTLVWKKQMFEPGLGYAFS 191
Cdd:TIGR03075 79 SRVYALDAKTGKILWKYDPKLPDDIIPVMCCDVVNRGAALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKKGYTIT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 192 LAPLALDGAIVVGSSGGEYGARGFIAALNANDGSLLWKRFTIPG------------QGEKHGDTWPDGMQTHGGAPAWLT 259
Cdd:TIGR03075 159 AAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGdmgylkktgkpvGGDPGAKTWPGDAWKTGGGATWGT 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 260 GTYDAATRTLYWGVGNPGPWLADLRPGDNLYSDSLLALDPKNGDLKWHYQYTKHDTWDYDGVNTPILATIRYKGQARDAI 339
Cdd:TIGR03075 239 GSYDPETNLIYFGTGNPAPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 340 IHADRNGFFHAIDRDTGKLIYAEPFVKATSV-TGY-TEDGTPIQDPAKYPKVGT---TIDTCPSFLGGKNWWSVSYDPER 414
Cdd:TIGR03075 319 AHADRNGFFYVLDRTNGKLLSAEPFVDKVNWaTGVdLKTGRPIEVPEARSTDGKkgkPVEVCPGFLGGKNWQPMAYSPKT 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 415 HLAIVPSLHACMSLSGKSVNYMEGLPYLGEGFEIKPEPGSEGyGELQAIDVNTGKKVWSHWSKLPWNGGVATTASGLAFS 494
Cdd:TIGR03075 399 GLFYVPANHVCMDYWPEKVSYKKGAAYLGAGFTIKPPPDDHI-GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFT 477
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 160346546 495 GSLDGHLYAFDVSTGKVLWESpKLASGIIAQPSVFEVDGKEYVAVLAGYGG 545
Cdd:TIGR03075 478 GTLEGYFKAFDAKTGEELWKF-KTGSGIVGPPVTYEQDGKQYVAVLSGWGG 527
|
|
| PQQ_ADH_II |
cd10279 |
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of ... |
52-573 |
8.57e-162 |
|
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of monomeric and soluble type II alcohol dehydrogenases utilizes pyrroloquinoline quinone (PQQ) as a cofactor and is related to ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199837 [Multi-domain] Cd Length: 549 Bit Score: 472.51 E-value: 8.57e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 52 WLTYYRTYNGQAHSPLKQIDASNVGRLTQAWSYKFPAElkQGFEATPIVNGRYLFVTTPKDNVYAFDAATGAQLWKYEPK 131
Cdd:cd10279 3 WLSYGRDYDEQRFSPLTQINRSNVGQLGLAWYFDLDTN--RGQEATPLVVDGVMYVSGPWSVVYALDARTGKLLWQYDPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 132 LGAESFKTACCDVVNRGVALYGKNVYVAMLSGEVAALDAQTGTLVWKKQMFEPGLGYAFSLAPLALDGAIVVGSSGGEYG 211
Cdd:cd10279 81 VDRESGRKACCDVVNRGVAVWDGKVFVGTLDGRLIALDAKTGKEVWSVDTIDPRKPYTITGAPRVAKGKVVIGNGGAEFG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 212 ARGFIAALNANDGSLLWKRFTIPGqGEKHGD----------TWPDG--MQTHGGAPAWLTGTYDAATRTLYWGVGNPGPW 279
Cdd:cd10279 161 VRGYVSAYDAETGKLVWRFYTVPG-NPAKPFehasleaaaaTWWTGewWRTGGGGTVWDSITYDPELDLLYIGTGNGSPW 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 280 LADLRP---GDNLYSDSLLALDPKNGDLKWHYQYTKHDTWDYDGVNTPILATIRYKGQARDAIIHADRNGFFHAIDRDTG 356
Cdd:cd10279 240 NRKVRSpggGDNLFLSSIVALDADTGRYKWHYQTTPGDTWDYTATQPIILADLEIDGKPRKVLMHAPKNGFFYVLDRATG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 357 KLIYAEPFVKATSVTGYTED-GTPIQDP-AKYPKvgTTIDTCPSFLGGKNWWSVSYDPERHLAIVPSLHA--CMSLSGKS 432
Cdd:cd10279 320 KLLSAEPFVPVNWATGIDLKtGRPIENPeARYTK--GPKLVFPGPLGAHNWHPMSYNPDTGLVYIPAQEIpaVYEDDPGD 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 433 VNYMEGLPYLGEGFEIKPEPGS-------EGYGELQAIDVNTGKKVWSHWSKLPWNGGVATTASGLAFSGSLDGHLYAFD 505
Cdd:cd10279 398 FGYNPLGWNTGITPDATPPPAAakralrkATRGRLVAWDPVTQKAAWRVEHPGPWNGGVLATAGNLVFQGTADGELAAYD 477
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 160346546 506 VSTGKVLWESPkLASGIIAQPSVFEVDGKEYVAVLAGYGGANPIWGGPmAKAADDVPRGGTLYVFALD 573
Cdd:cd10279 478 ARTGEKLWSFD-TGSGIVAAPMTYSVDGEQYVAVLAGWGGAGALSGGP-PGAAGKVQNPGRLLVFKLG 543
|
|
| PQQ_MDH |
cd10278 |
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the ... |
52-572 |
2.85e-154 |
|
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits.
Pssm-ID: 199836 [Multi-domain] Cd Length: 553 Bit Score: 453.71 E-value: 2.85e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 52 WLTYYRTYNGQAHSPLKQIDASNVGRLTQAWSykFPAELKQGFEATPIVNGRYLFVTTP-KDNVYAFD-AATGAQLWKYE 129
Cdd:cd10278 1 WVMPGKDYANTRYSPLAQINKDNVKNLKVAWT--FSTGVLRGHEGAPLVVGDTMYVVTPfPNNVYALDlNDPGKILWKYK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 130 PKLGAESFKTACCDVVNRGVALYGKNVYVAMLSGEVAALDAQTGTLVWKKQMFEPGLGYAFSLAPLALDGAIVVGSSGGE 209
Cdd:cd10278 79 PKQDPSAVAVACCDVVNRGLAYADGKIFFNQLDGHLVALDAKTGKEVWKVKNGDPKVGETLTMAPLVVKDKVIVGISGGE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 210 YGARGFIAALNANDGSLLWK--------------RFTI----PGQGEKHGDTWPDGMQTHGGAPAWLTGTYDAATRTLYW 271
Cdd:cd10278 159 FGVRGYVTAYDLKTGKLVWRaystgpdkdvligpDFNPfnphDGGKDLGLSTWPGDAWKIGGGTNWGWYSYDPKLNLVYY 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 272 GVGNPGPWLADLRPGDNLYSDSLLALDPKNGDLKWHYQYTKHDTWDYDGVNTPILATIRYKGQARDAIIHADRNGFFHAI 351
Cdd:cd10278 239 GTGNPGPWNPTQRPGDNKWSMTIFARDPDTGEAKWAYQMTPHDEWDYDGVNEMILVDQTVDGKKRKLLVHFDRNGFVYTL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 352 DRDTGKLIYAEPFVKATSVTGYTED-GTPIQDPAKYPKVG-TTIDTCPSFLGGKNWWSVSYDPERHLAIVPSLHACMSLS 429
Cdd:cd10278 319 DRTTGELLSAEKFDPVNNWKGVDLKtGRPVKDPEKSTHMDhNVTDICPSAMGGKDQQPSSYSPKTGLFYVPTNHLCMDYE 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 430 GKSVNYMEGLPYLGEGFEIKPEPGSeGYGELQAIDVNTGKKVWSHWSKLPWNGGVATTASGLAFSGSLDGHLYAFDVSTG 509
Cdd:cd10278 399 PFEVNYTAGQPYVGATLAMYPGPGG-HMGQFKAWDPVTGKTKWEIKERFPVWSGTLATAGGLVFYGTLDGWFKAVDAKTG 477
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 160346546 510 KVLWESpKLASGIIAQPSVFEVDGKEYVAVLAGYGG----------ANPIWG----GPMAKAADDVPRGGTLYVFAL 572
Cdd:cd10278 478 KLLWKF-KLPSGIIGNPITYKHDGKQYVAVLSGVGGwagvgvaaglRDPTAGlgavGAFKDLPNYTQMGGTLYVFSL 553
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
72-571 |
1.07e-111 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 340.35 E-value: 1.07e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 72 ASNVGRLTQAWSYKFPAELKQGFEATPIVNGRYLFVTTPKDNVYAFDAATGAQLWKYEPKLGAESFKtACCDVVNRGVAL 151
Cdd:cd00216 1 ADNVFQLTPAWSFSTGDGGNRGSELTPIVVDGVMYATTSFSRVFALDADDGKEIWSYDPALKDGWFE-ACCDLVNRGVAV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 152 YGKNVYVAMLSGEVAALDAQTGTLVWKKQMFEPGLGYAFSLAPLALDGAIVVGSSGGEYGARGFIAALNANDGSLLWKRF 231
Cdd:cd00216 80 WGGKVYIGVLDGRVYALNAETGKVAWKVKNADVLGGYTATSAPVVVDGLVIIGSSGDEFGVRGYLTAYDVATGEEKWRFY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 232 TIPG-----------QGEKHGDTWPDGMQTHGGAPAWLTGTYDAATRTLYWGVGNPGPWL--ADLRPGDNLYSDSLLALD 298
Cdd:cd00216 160 LVMPdpnllpgkdstVTDRNTPTGDEHTWTSGGGTGWSSAAYDAELNLIYVGGGNPTPWNwgGNRTPGDNLYTSSIVAVN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 299 PKNGDLKWHYQYTKHDTWDYDGVNTPILATIRYKGQARDAIIHADRNGFFHAIDRDTGKLIYAEPFVkatsvtgytedgt 378
Cdd:cd00216 240 ADTGEMKWQYQTTPHDAWDYDGDNTPVLADIKVKGKKVKVLFAPAKNGNFYVLDRRNGELVSARPLV------------- 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 379 piqdpakypkvgttidtcpsflggknwwSVSYDPERHLAIVPSlhacmslsgksvnymeglpylgegfeikpepgsegYG 458
Cdd:cd00216 307 ----------------------------PDSYDPDRELFYVPA-----------------------------------NG 323
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 459 ELQAIDVNTGKKVWSHWSKLPWNGGVATTASGLAFSGSLDGHLYAFDVSTGKVLWESpKLASGIIAQPSVFEVDGKEYVA 538
Cdd:cd00216 324 RIMALDPVTGVVVWEKSELHPLLGGPLSTAGNLVFVGTSDGYLKAYNADTGEKLWQQ-KVPSGFQAEPVTYEVDGEQYVL 402
|
490 500 510
....*....|....*....|....*....|...
gi 160346546 539 VLAGYGGANPIWGGpMAKAADDVPRGGTLYVFA 571
Cdd:cd00216 403 IQAGGGGAFPLWGG-MADLTRGTQMGGTVVVYK 434
|
|
| PQQ_mGDH |
cd10280 |
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes ... |
52-572 |
2.32e-98 |
|
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199838 [Multi-domain] Cd Length: 616 Bit Score: 311.43 E-value: 2.32e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 52 WLTYYRTYNGQAHSPLKQIDASNVGRLTQAWSYK----FPAELKQG-FEATPIVNGRYLFVTTPKDNVYAFDAATGAQLW 126
Cdd:cd10280 1 WPAYGGDPGGTRYSPLDQITPDNVGKLKVAWTYHtgdlPGPDGNEGtFEATPLKVGGTLYLCTPHNRVIALDAATGKELW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 127 KYEPKLGAESFKTAccdVVNRGVALY---------GKNVYVAMLSGEVAALDAQTGTLVW----------KKQMFEPGLG 187
Cdd:cd10280 81 RFDPKAGADAAPGH---QTCRGVSYWedgaaaaacARRIFFGTGDARLIALDARTGKPCPdfgdngvvdlREGLGRVKPG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 188 YAFSL-APLALDGAIVVGSSGGEY----GARGFIAALNANDGSLLWKRFTIPGQGEKHGDTwPDGMQTHGGAPAWLTGTY 262
Cdd:cd10280 158 FYSSTsPPTVYGDLVIVGSAVADNqavdAPSGVIRAFDVRTGKLVWAFDTIPPPGEAGPDT-AGAWYTRGGPNVWAGMSA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 263 DAATRTLYWGVGNPGP--WLADlRPGDNLYSDSLLALDPKNGDLKWHYQYTKHDTWDYDGVNTPILATIRYKGQARDAII 340
Cdd:cd10280 237 DEKLGLVYLPTGSATPdfYGGD-RPGDNLFANSLVALDAATGKRRWHFQTVHHDLWDYDLPAQPTLVDVPRDGKTVPAVA 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 341 HADRNGFFHAIDRDTGKLIYA--EPFVKATSVTG--------------------YTED----GTPIQ--------DPAKY 386
Cdd:cd10280 316 QPTKQGFVFVLDRRTGKPLWPveERPVPQGDVPGertsptqpfptlpppfarqgLTEDdmwgATPFDqlacriqfRSLRY 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 387 ------PKVGTTIdTCPSFLGGKNWWSVSYDPERHLAIVPSLHACM---------SLSGKSVNYMEGLPYLGEGFEIKPE 451
Cdd:cd10280 396 eglftpPSLDGTL-IFPGNDGGANWGGAAVDPERGILYVNSNRLPFviqlvprapGDPAGVAGGGEGGGGGGGPSPQAGT 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 452 PGSEG----------------YGELQAIDVNTGKKVWSH-----------WSKLPW------NGGVATTASGLAF-SGSL 497
Cdd:cd10280 475 PYGVGrgrflsplglpcqappWGTLTAIDLNTGKILWQVplgtvpdlgpkGIPLPIptgtpnLGGPVVTAGGLVFiAATQ 554
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 160346546 498 DGHLYAFDVSTGKVLWESpKLASGIIAQPSVFEVDGKEYVAVLAGyGGANPiwggpmakaadDVPRGGTLYVFAL 572
Cdd:cd10280 555 DNYLRAFDKATGKELWEA-RLPAGGQATPMTYEVDGKQYVVIAAG-GHGSL-----------GTKRGDSVIAYAL 616
|
|
| PQQ_membr_DH |
TIGR03074 |
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; This protein ... |
25-542 |
9.26e-68 |
|
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Pssm-ID: 274418 [Multi-domain] Cd Length: 764 Bit Score: 233.74 E-value: 9.26e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 25 NPGLVDAAADYPAVTYQRLTNAQHDPGWLTYYRTYNGQAHSPLKQIDASNVGRLTQAWSY-----KFPAE-LKQGFEATP 98
Cdd:TIGR03074 111 DPHPIVGALDTEVPATAAAAPAVPAGDWAAYGRTQAGQRYSPLDQINPDNVGNLKVAWTYhtgdlKTPDDpGEATFQATP 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 99 IVNGRYLFVTTPKDNVYAFDAATGAQLWKYEPKLGAESFK--TACcdvvnRGVALY------------------GKNVYV 158
Cdd:TIGR03074 191 LKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEADRqhQTC-----RGVSYYdapaaaagpagpaapadcARRIIL 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 159 AMLSGEVAALDAQTGTLV----------WKKQMFEPGLGYAFSL-APLALDGAIVVGSS----GGEYGARGFIAALNAND 223
Cdd:TIGR03074 266 PTSDARLIALDADTGKLCedfgnngtvdLTAGMGPTPPGYYYPTsPPLVAGTTVVIGGRvadnYSTDEPSGVIRAFDVNT 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 224 GSLLWK-------RFTIPGQGEkhgdTWpdgmqTHGGAPAWLTGTYDAATRTLYWGVGNPGP--WLADLRPGDNLYSDSL 294
Cdd:TIGR03074 346 GALVWAwdpgnpdPTAPPAPGE----TY-----TRNSPNSWSVASYDEKLGLVYLPMGNQTPdqWGGDRTPADEKYSSSL 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 295 LALDPKNGDLKWHYQYTKHDTWDYDGVNTPILATI-RYKGQARDAIIHADRNGFFHAIDRDTGKLIYA--EPFVKATSVT 371
Cdd:TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLpKADGTTVPALVAPTKQGQIYVLDRRTGEPIVPveEVPVPQGAVP 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 372 G-YTEDGTPIQDPAKYPKV--------GTTID-----------------TCPS---------FLGGKNWWSVSYDPERHL 416
Cdd:TIGR03074 497 GeRYSPTQPFSVLTFGPPTltesdmwgATPFDqlacriqfkslryeglyTPPSeqgslvfpgNLGGFNWGGVAVDPTRQV 576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 417 AI------------VPSLHACMSLSG-------KSVNYMEGLPYlgeGFEIKPEPGSEG-------YGELQAIDVNTGKK 470
Cdd:TIGR03074 577 MFvnpmrlpfvsqlVPRAPGDEAPSGakgkgteMGLNPNKGTPY---AVNMNPFLSPLGipcqappWGYMAAIDLKTGKV 653
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 471 VWSH-------------WSKLPW------NGGVATTASGLAF-SGSLDGHLYAFDVSTGKVLWESpKLASGIIAQPSVF- 529
Cdd:TIGR03074 654 VWQHpngtvrdtgpmgiPMPLPIpigvptLGGPLATAGGLVFiGATQDNYLRAYDLSTGKELWEA-RLPAGGQATPMTYm 732
|
650
....*....|...
gi 160346546 530 EVDGKEYVAVLAG 542
Cdd:TIGR03074 733 GKDGKQYVVIVAG 745
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
67-359 |
1.32e-17 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 84.87 E-value: 1.32e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 67 LKQIDASNvGRltQAWSykfpAELKQGFEATPIVNGRYLFVTTPKDNVYAFDAATGAQLWKYepKLGAESFKTAccdVVN 146
Cdd:COG1520 69 VAALDAAT-GK--ELWR----VDLGEPLSGGVGADGGLVVVGTEDGEVIALDADDGEELWRA--RLSSEVLAAP---AVA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 147 RGValygknVYVAMLSGEVAALDAQTGTLVWKKQMFEPglgyAFSL----APLALDGAIVVGSSGGEygargfIAALNAN 222
Cdd:COG1520 137 GGR------VVVRTGDGRVYALDAATGERLWSYQRPVP----ALTLrgtsSPVIVGGAVLVGFANGK------LVALDLA 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 223 DGSLLW-KRFTIPgqgekHGDTWPDGMQTHGGAPAWLTGT------------YDAATRTLYW-----GVGNPGpwlADlr 284
Cdd:COG1520 201 NGQPLWeQRVAQP-----RGRTELERLVDVDGTPVVDGGVvyavayqgrlaaLDLRSGRVLWsrdlsSYTGLA---VD-- 270
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 160346546 285 pGDNLY----SDSLLALDPKNGDLKWhyqytKHDTWDYDGVNTPILatirykgqARDAIIHADRNGFFHAIDRDTGKLI 359
Cdd:COG1520 271 -GNNLYvtddDGRVWALDRRNGAELW-----KQDALLYRGLTAPVV--------LGDYVVVGDFEGYLHWLSRDDGSLV 335
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
79-306 |
3.51e-17 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 80.91 E-value: 3.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 79 TQAWSykfpAELKQGFEATPIVNGRYLFVTTPKDNVYAFDAATGAQLWKYepKLGAESFKTaccDVVNRGValygknVYV 158
Cdd:pfam13360 14 AELWR----VDLETGLGGGVAVDGGRLFVATGGGQLVALDAATGKLLWRQ--TLSGEVLGA---PLVAGGR------VFV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 159 AMLSGEVAALDAQTGTLVWKKQMFEPGLGYAFSLAPLALDGAIVVGSSGGEygargfIAALNANDGSLLWKRfTIPGQge 238
Cdd:pfam13360 79 VAGDGSLIALDAADGRRLWSYQRSGEPLALRSSGSPAVVGDTVVAGFSSGK------LVALDPATGKVRWEA-PLAAP-- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 239 kHGDTWPDGMQTHGGAPAWLTGT------------YDAATRTLYW--GVGNP-GPWLAdlrpGDNLYSDS----LLALDP 299
Cdd:pfam13360 150 -RGTNELERLVDITGTPVVAGGRvfasayqgrlvaFDAATGRRLWtrEISGPnGPILD----GDLLYVVSddgeLYALDR 224
|
....*..
gi 160346546 300 KNGDLKW 306
Cdd:pfam13360 225 ATGAVVW 231
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
65-228 |
3.60e-16 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 80.24 E-value: 3.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 65 SPLKQIDASNvgRLTQAWSYKFPAELKQGFEA-TPIVNGRYLFVTTPKDNVYAFDAATGAQLWKYepKLGAEsfktaccd 143
Cdd:COG1520 21 APLPEFEPSV--KVKQLWSASVGDGVGKGYSRlAPAVAGDRVYAADADGRVAALDAATGKELWRV--DLGEP-------- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 144 vVNRGVALYGKNVYVAMLSGEVAALDAQTGTLVWKKQMfePGLGYAfslAPLALDGAIVVgssggeYGARGFIAALNAND 223
Cdd:COG1520 89 -LSGGVGADGGLVVVGTEDGEVIALDADDGEELWRARL--SSEVLA---APAVAGGRVVV------RTGDGRVYALDAAT 156
|
....*
gi 160346546 224 GSLLW 228
Cdd:COG1520 157 GERLW 161
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
110-357 |
3.69e-16 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 77.83 E-value: 3.69e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 110 PKDNVYAFDAATGAQLWK--YEPKLGAesfktaccdvvnrGVALYGKNVYVAMLSGEVAALDAQTGTLVWKKQMFEPGLG 187
Cdd:pfam13360 1 ADGVVTALDAATGAELWRvdLETGLGG-------------GVAVDGGRLFVATGGGQLVALDAATGKLLWRQTLSGEVLG 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 188 yafslAPLALDGAIVVGSSGGEygargfIAALNANDGSLLW--KRFTIPGQGEKHGDTWPDG----MQTHGGApawLTGt 261
Cdd:pfam13360 68 -----APLVAGGRVFVVAGDGS------LIALDAADGRRLWsyQRSGEPLALRSSGSPAVVGdtvvAGFSSGK---LVA- 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 262 YDAATRTLYWG-------VGNPGPWLADL--RP---GDNLY----SDSLLALDPKNGDLKWhyqytkhdTWDYDGVNTPI 325
Cdd:pfam13360 133 LDPATGKVRWEaplaaprGTNELERLVDItgTPvvaGGRVFasayQGRLVAFDAATGRRLW--------TREISGPNGPI 204
|
250 260 270
....*....|....*....|....*....|..
gi 160346546 326 LatirykgqARDAIIHADRNGFFHAIDRDTGK 357
Cdd:pfam13360 205 L--------DGDLLYVVSDDGELYALDRATGA 228
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
81-360 |
1.02e-15 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 78.91 E-value: 1.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 81 AWSYKFPAELKQGFEATPIVNGRYLFVTTPKDNVYAFDAATGAQLWKYEPKLGAESFKTaccdvvnrgVALYGKNVYVAM 160
Cdd:cd10276 17 LWSKSVGNGGMAGIDLTPVVAGDMVYAADANGQVSAFNATTGKIIWETSLSGKGFLGGT---------PAVGNGKIFVGT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 161 LSGEVAALDAQTGTLVWKKQmfepgLGYAFSLAPLAL-DGAIVVGSSGGEYgargfiAALNANDGSLLWkrftipgqgeK 239
Cdd:cd10276 88 ESGYLYALDAKDGSELWRTE-----VSDSQLLSPPTYaDGKIYVGTGDGRL------YYCNAETGKVVW----------N 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 240 HGDTWPDGMQTHGGAPAWLTGTY------------DAATRTLYW--GVGNPGPWLADLR----------PGDNLYSDS-- 293
Cdd:cd10276 147 RTSTAPELSLRGGAAPVGAYDVVfvgdgngtvvalNTGTGVDIWefSVSEPRGRTELPRmidssvtyvvVGGYLYSTSyq 226
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 160346546 294 --LLALDPKNGDLKWhyqytkhdTWDYDGVNTpiLATIrykgqARDAIIHADRNGFFHAIDRDTGKLIY 360
Cdd:cd10276 227 gyLVALDFESGQFLW--------SRKASGGTS--TSTD-----ANGRVYVGDGEGSLYCLDASTGDELW 280
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
65-359 |
7.34e-15 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 76.51 E-value: 7.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 65 SPLKQIDASnvGRLTQAWS---YKFPAELKQGFeaTPIVNGRYLFVTTPKDNVYAFDAATGAQLWKYepKLGAEsfktac 141
Cdd:TIGR03300 29 AELPEFQPT--VKVDQVWSasvGDGVGHYYLRL--QPAVAGGKVYAADADGTVAALDAETGKRLWRV--DLDER------ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 142 cdvVNRGVALYGKNVYVAMLSGEVAALDAQTGTLVWKKQ----MFEP--------------GLGYAFSLA---------- 193
Cdd:TIGR03300 97 ---LSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKlsseVLSPplvanglvvvrtndGRLTALDAAtgerlwtysr 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 194 ------------PLALDGAIVVGSSGGEygargfIAALNANDGSLLWKRfTIpgqGEKHGDTWPDGMQTHGGAPAWLTGT 261
Cdd:TIGR03300 174 vtppltlrgsasPVIADGGVLVGFAGGK------LVALDLQTGQPLWEQ-RV---ALPKGRTELERLVDVDGDPVVDGGQ 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 262 ------------YDAATRTLYWG--VGNPGPWLADlrpGDNLY----SDSLLALDPKNGDLKWhyqytKHDTWDYDGVNT 323
Cdd:TIGR03300 244 vyavsyqgrvaaLDLRSGRVLWKrdASSYQGPAVD---DNRLYvtdaDGVVVALDRRSGSELW-----KNDELKYRQLTA 315
|
330 340 350
....*....|....*....|....*....|....*.
gi 160346546 324 PILatirykgqARDAIIHADRNGFFHAIDRDTGKLI 359
Cdd:TIGR03300 316 PAV--------LGGYLVVGDFEGYLHWLDRDDGSFV 343
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
65-228 |
1.41e-11 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 66.49 E-value: 1.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 65 SPLKQIDASNvgRLTQAWSYKFPAELKQGFEA-TPIVNGRYLFVTTPKDNVYAFDAATGAQLWK--YEPKLGAES-FKTA 140
Cdd:PRK11138 33 SPLPQVENQF--TPTTVWSTSVGDGVGDYYSRlHPAVAYNKVYAADRAGLVKALDADTGKEIWSvdLSEKDGWFSkNKSA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 141 ccdVVNRGVALYGKNVYVAMLSGEVAALDAQTGTLVWKKQMfepgLGYAFSlAPLALDGAIVVGSSggeygaRGFIAALN 220
Cdd:PRK11138 111 ---LLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV----AGEALS-RPVVSDGLVLVHTS------NGMLQALN 176
|
....*...
gi 160346546 221 ANDGSLLW 228
Cdd:PRK11138 177 ESDGAVKW 184
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
458-528 |
1.22e-10 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 63.29 E-value: 1.22e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 160346546 458 GELQAIDVNTGKKVWSHWSKLPWNGGVATtASGLAFSGSLDGHLYAFDVSTGKVLWESpKLASGIIAQPSV 528
Cdd:COG1520 67 GRVAALDAATGKELWRVDLGEPLSGGVGA-DGGLVVVGTEDGEVIALDADDGEELWRA-RLSSEVLAAPAV 135
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
150-543 |
5.33e-10 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 61.37 E-value: 5.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 150 ALYGKNVYVAMLSGEVAALDAQTGTLVWKKQmfepgLGYAFSlAPLALDG-AIVVGSSGGEygargfIAALNANDGSLLW 228
Cdd:COG1520 54 AVAGDRVYAADADGRVAALDAATGKELWRVD-----LGEPLS-GGVGADGgLVVVGTEDGE------VIALDADDGEELW 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 229 KR------FTIPgqgekhgdtwpdgmQTHGGApawltgtydAATRTlywgvgnpgpwladlrpGDNlysdSLLALDPKNG 302
Cdd:COG1520 122 RArlssevLAAP--------------AVAGGR---------VVVRT-----------------GDG----RVYALDAATG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 303 DLKWHYQYTkhdtwdydgvnTPILaTIRYKGQ---ARDAIIHADRNGFFHAIDRDTGKLIY----AEPfvkatsvTGYTE 375
Cdd:COG1520 158 ERLWSYQRP-----------VPAL-TLRGTSSpviVGGAVLVGFANGKLVALDLANGQPLWeqrvAQP-------RGRTE 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 376 -------DGTPIQDpakypkvGTTIdtCpsflggknwwSVSYDperhlaivpslhacmslsgksvnymeglpylgegfei 448
Cdd:COG1520 219 lerlvdvDGTPVVD-------GGVV--Y----------AVAYQ------------------------------------- 242
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 449 kpepgsegyGELQAIDVNTGKKVWSHwsKLPWNGGVATTASGLAFSGSlDGHLYAFDVSTGKVLWESPKLASGIIAQPSV 528
Cdd:COG1520 243 ---------GRLAALDLRSGRVLWSR--DLSSYTGLAVDGNNLYVTDD-DGRVWALDRRNGAELWKQDALLYRGLTAPVV 310
|
410
....*....|....*..
gi 160346546 529 FevdgKEYVAV--LAGY 543
Cdd:COG1520 311 L----GDYVVVgdFEGY 323
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
458-569 |
1.04e-09 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 58.95 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 458 GELQAIDVNTGKKVWSHWSKLPWNGGVATtASGLAFSGSLDGHLYAFDVSTGKVLWESPkLASGIIAQPS-----VFEVD 532
Cdd:pfam13360 3 GVVTALDAATGAELWRVDLETGLGGGVAV-DGGRLFVATGGGQLVALDAATGKLLWRQT-LSGEVLGAPLvaggrVFVVA 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 160346546 533 GKEYVAVLAGYGGaNPIW----GGPMAK---AADDVPRGGTLYV 569
Cdd:pfam13360 81 GDGSLIALDAADG-RRLWsyqrSGEPLAlrsSGSPAVVGDTVVA 123
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
454-528 |
5.88e-09 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 58.02 E-value: 5.88e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 160346546 454 SEGYGELQAIDVNTGKKVWSHWSKLPWNGGVaTTASGLAFSGSLDGHLYAFDVSTGKVLWESpKLASGIIAQPSV 528
Cdd:TIGR03300 71 ADADGTVAALDAETGKRLWRVDLDERLSGGV-GADGGLVFVGTEKGEVIALDAEDGKELWRA-KLSSEVLSPPLV 143
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
97-208 |
9.23e-09 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 57.63 E-value: 9.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 97 TPIVNGRYLFVTTPKDNVYAFDAATGAQLWKYEpklgaesfktaccDVVNR---GVALYGKNVYVAMLSGEVAALDAQTG 173
Cdd:TIGR03300 274 GPAVDDNRLYVTDADGVVVALDRRSGSELWKND-------------ELKYRqltAPAVLGGYLVVGDFEGYLHWLDRDDG 340
|
90 100 110
....*....|....*....|....*....|....*
gi 160346546 174 TLVWKKQmfePGlGYAFSLAPLALDGAIVVGSSGG 208
Cdd:TIGR03300 341 SFVARLK---TD-GSGIASPPVVVGDGLLVQTRDG 371
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
55-291 |
1.18e-08 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 56.96 E-value: 1.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 55 YYRTYNGQAHSplkqIDASNvGRLTqaWSYKFPAELKQGfeATPIVNGRYLFVTTPKDNVYAFDAATGAQLWkyEPKLGA 134
Cdd:cd10276 42 YAADANGQVSA----FNATT-GKII--WETSLSGKGFLG--GTPAVGNGKIFVGTESGYLYALDAKDGSELW--RTEVSD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 135 ESFKTAccdvvnrgVALYGKNVYVAMLSGEVAALDAQTGTLVWKKQMFEPGLGYAFSLAPLALDGAIVVGSSGG------ 208
Cdd:cd10276 111 SQLLSP--------PTYADGKIYVGTGDGRLYYCNAETGKVVWNRTSTAPELSLRGGAAPVGAYDVVFVGDGNGtvvaln 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 209 --------------EYGAR-------------------------GFIAALNANDGSLLWKR-------FTIP-------G 235
Cdd:cd10276 183 tgtgvdiwefsvsePRGRTelprmidssvtyvvvggylystsyqGYLVALDFESGQFLWSRkasggtsTSTDangrvyvG 262
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 160346546 236 QGEKH--------GDTWPDGMQTHGG---APAWLTGTY----DAATRTLYWGVGNPGPWLADLRPGDNLYS 291
Cdd:cd10276 263 DGEGSlycldastGDELWSQTVLLGRvlsSPAIYVGVYiyvtDNAEGYLYCLKDNDGLTVARVEVDYSQYI 333
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
146-543 |
3.36e-08 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 55.71 E-value: 3.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 146 NRGVALYGKNVYVAMLSGEVAALDAQTGTLVWKKQmfepgLGYAFSLAPLALDGAIVVGSSGGEygargfIAALNANDGS 225
Cdd:TIGR03300 58 RLQPAVAGGKVYAADADGTVAALDAETGKRLWRVD-----LDERLSGGVGADGGLVFVGTEKGE------VIALDAEDGK 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 226 LLWKR------FTIPgqgekhgdtwpdgmQTHGGapawltgtydaatrtlywgvgnpgpwLADLRPGDNlysdSLLALDP 299
Cdd:TIGR03300 127 ELWRAklssevLSPP--------------LVANG--------------------------LVVVRTNDG----RLTALDA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 300 KNGDLKWHYQytkhdtwdydgVNTPILaTIRYKGQ---ARDAIIHADRNGFFHAIDRDTGKLIY----AEPfvkatsvTG 372
Cdd:TIGR03300 163 ATGERLWTYS-----------RVTPPL-TLRGSASpviADGGVLVGFAGGKLVALDLQTGQPLWeqrvALP-------KG 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 373 YTE-------DGTPIQDpakypkvgttidtcpsflgGKNWWSVSYDperhlaivpslhacmslsgksvnymeglpylgeg 445
Cdd:TIGR03300 224 RTElerlvdvDGDPVVD-------------------GGQVYAVSYQ---------------------------------- 250
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 446 feikpepgsegyGELQAIDVNTGKKVWSHwsKLPWNGGVATTASGLaFSGSLDGHLYAFDVSTGKVLWESPKLASGIIAQ 525
Cdd:TIGR03300 251 ------------GRVAALDLRSGRVLWKR--DASSYQGPAVDDNRL-YVTDADGVVVALDRRSGSELWKNDELKYRQLTA 315
|
410 420
....*....|....*....|
gi 160346546 526 PSVFevdgKEYVAV--LAGY 543
Cdd:TIGR03300 316 PAVL----GGYLVVgdFEGY 331
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
79-229 |
3.39e-08 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 54.33 E-value: 3.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 79 TQAWSYKFPAELKQGF-EATPIVNGRYLFVTTPKDNVYAFDAATGAQLWKYE---PKLGAESFKTAccDVVNRgVALYGK 154
Cdd:pfam13360 94 RRLWSYQRSGEPLALRsSGSPAVVGDTVVAGFSSGKLVALDPATGKVRWEAPlaaPRGTNELERLV--DITGT-PVVAGG 170
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 160346546 155 NVYVAMLSGEVAALDAQTGTLVWKKqmfepglGYAFSLAPLALDGAIVVGSSGGEygargfIAALNANDGSLLWK 229
Cdd:pfam13360 171 RVFASAYQGRLVAFDAATGRRLWTR-------EISGPNGPILDGDLLYVVSDDGE------LYALDRATGAVVWK 232
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
98-212 |
7.29e-08 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 54.82 E-value: 7.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 98 PIVNGRYLFVTTPKDNVYAFDAATGAQLWKYEpklgaesfktaccDVVNRGV---ALYGKNVYVAMLSGEVAALDAQTGT 174
Cdd:COG1520 267 LAVDGNNLYVTDDDGRVWALDRRNGAELWKQD-------------ALLYRGLtapVVLGDYVVVGDFEGYLHWLSRDDGS 333
|
90 100 110
....*....|....*....|....*....|....*...
gi 160346546 175 LVWKKQMFepglGYAFSLAPLALDGAIVVGSSGGEYGA 212
Cdd:COG1520 334 LVARLRVD----GSGIRAAPVVVGDTLYVQTRDGTLAA 367
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
458-537 |
1.34e-07 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 53.87 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 458 GELQAIDVNTGKKVWSH-WSKLPWNGGVATTASGLAFSGSLDGHLYAFDVSTGKVLWESPKLASGIIAQPSVFevDGKEY 536
Cdd:cd10276 48 GQVSAFNATTGKIIWETsLSGKGFLGGTPAVGNGKIFVGTESGYLYALDAKDGSELWRTEVSDSQLLSPPTYA--DGKIY 125
|
.
gi 160346546 537 V 537
Cdd:cd10276 126 V 126
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
458-574 |
1.32e-06 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 50.70 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 458 GELQAIDVNTGKKVWSHWSKLP----WNGGVATTASGLAFSGSLDGHLYAFDVSTGKVLWES----PKLASGI------- 522
Cdd:TIGR03300 155 GRLTALDAATGERLWTYSRVTPpltlRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQrvalPKGRTELerlvdvd 234
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 160346546 523 ----IAQPSVFEVDGKEYVAVLAGYGGaNPIWGGPMAKAADDVPRGGTLY-------VFALDR 574
Cdd:TIGR03300 235 gdpvVDGGQVYAVSYQGRVAALDLRSG-RVLWKRDASSYQGPAVDDNRLYvtdadgvVVALDR 296
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
303-544 |
2.28e-06 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 50.02 E-value: 2.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 303 DLKWHYQYTKHDTWDYDgvNTPILATirykgqarDAIIHADRNGFFHAIDRDTGKLIYAEPfvkaTSVTGYTEdGTPIQD 382
Cdd:cd10276 15 EVLWSKSVGNGGMAGID--LTPVVAG--------DMVYAADANGQVSAFNATTGKIIWETS----LSGKGFLG-GTPAVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 383 PAKYpkvgttidtcpsFLGGKNWWSVSYDPErHLAIVPSLHACMSLSGKSVNYMEGLPYLGEGFeikpepgsegyGELQA 462
Cdd:cd10276 80 NGKI------------FVGTESGYLYALDAK-DGSELWRTEVSDSQLLSPPTYADGKIYVGTGD-----------GRLYY 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 463 IDVNTGKKVWSHWSKLP----WNGGVATTASGLAFSGSLDGHLYAFDVSTGKVLWE----SPKLASGI--IAQPSVFEVD 532
Cdd:cd10276 136 CNAETGKVVWNRTSTAPelslRGGAAPVGAYDVVFVGDGNGTVVALNTGTGVDIWEfsvsEPRGRTELprMIDSSVTYVV 215
|
250
....*....|..
gi 160346546 533 GKEYVAVLAGYG 544
Cdd:cd10276 216 VGGYLYSTSYQG 227
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
458-566 |
9.26e-06 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 48.00 E-value: 9.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 458 GELQAIDVNTGKKVWshwsKLPWNGGVAT---TASGLAFSGSLDGHLYAFDVSTGKVLW----ESPKL-----ASGIIAQ 525
Cdd:TIGR03300 115 GEVIALDAEDGKELW----RAKLSSEVLSpplVANGLVVVRTNDGRLTALDAATGERLWtysrVTPPLtlrgsASPVIAD 190
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 160346546 526 PSVFEV-DGKEYVAVLAGYGgaNPIWGGPMAkaaddVPRGGT 566
Cdd:TIGR03300 191 GGVLVGfAGGKLVALDLQTG--QPLWEQRVA-----LPKGRT 225
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
457-528 |
1.92e-05 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 47.23 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 457 YGELQAIDVNTGKKVWS--------HWSKLP---WNGGVaTTASGLAFSGSLDGHLYAFDVSTGKVLWESpKLASGIIAQ 525
Cdd:PRK11138 78 AGLVKALDADTGKEIWSvdlsekdgWFSKNKsalLSGGV-TVAGGKVYIGSEKGQVYALNAEDGEVAWQT-KVAGEALSR 155
|
...
gi 160346546 526 PSV 528
Cdd:PRK11138 156 PVV 158
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
456-542 |
8.38e-05 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 44.32 E-value: 8.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 456 GYGELQAIDVNTGKKVWshWSKLP-WNGGVATTASGLAFSGSLDGHLYAFDVSTGKVLWESPKLASGI-IAQPSVFEVDG 533
Cdd:pfam13360 41 GGGQLVALDAATGKLLW--RQTLSgEVLGAPLVAGGRVFVVAGDGSLIALDAADGRRLWSYQRSGEPLaLRSSGSPAVVG 118
|
....*....
gi 160346546 534 KEYVAVLAG 542
Cdd:pfam13360 119 DTVVAGFSS 127
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
81-230 |
1.08e-04 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 44.92 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 81 AWSYKFPAELKqgfeATPIVNGRYLFVTTPKDNVYAFDAATGAQLWKYEPKLGAESFktaccdvvnRG----VALYGkNV 156
Cdd:PRK11138 143 AWQTKVAGEAL----SRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL---------RGesapATAFG-GA 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 157 YVAMLSGEVAALDAQTGTLVWKKQMFEPGLGYAFS------LAPLALDGAIVVgssggeYGARGFIAALNANDGSLLWKR 230
Cdd:PRK11138 209 IVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDrlvdvdTTPVVVGGVVYA------LAYNGNLVALDLRSGQIVWKR 282
|
|
| PQQ |
pfam01011 |
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller ... |
490-516 |
1.44e-04 |
|
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Pssm-ID: 395799 [Multi-domain] Cd Length: 36 Bit Score: 39.10 E-value: 1.44e-04
10 20
....*....|....*....|....*..
gi 160346546 490 GLAFSGSLDGHLYAFDVSTGKVLWESP 516
Cdd:pfam01011 1 GTVYLGSDDGYLYALDAETGKVLWSFK 27
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
458-527 |
2.16e-04 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 43.77 E-value: 2.16e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 160346546 458 GELQAIDVNTGKKVWSHWSKLP---WNG-GVATTASGLAFSGSLDGHLYAFDVSTGKVLWESPklasgiIAQPS 527
Cdd:PRK11138 170 GMLQALNESDGAVKWTVNLDVPsltLRGeSAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQR------ISQPT 237
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
458-574 |
5.46e-04 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 41.62 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160346546 458 GELQAIDVNTGKKVWSH-WSKLPWN---GGVATTASGLAFSGSLDGHLYAFDVSTGKVLWE----SPKLASGIIAQPSVF 529
Cdd:pfam13360 83 GSLIALDAADGRRLWSYqRSGEPLAlrsSGSPAVVGDTVVAGFSSGKLVALDPATGKVRWEaplaAPRGTNELERLVDIT 162
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 160346546 530 --EVDGKEYVAVLAGYGG--------ANPIW----GGPMAKAADdvprGGTLY-------VFALDR 574
Cdd:pfam13360 163 gtPVVAGGRVFASAYQGRlvafdaatGRRLWtreiSGPNGPILD----GDLLYvvsddgeLYALDR 224
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
485-516 |
9.98e-04 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 36.74 E-value: 9.98e-04
10 20 30
....*....|....*....|....*....|..
gi 160346546 485 ATTASGLAFSGSLDGHLYAFDVSTGKVLWESP 516
Cdd:smart00564 2 VVLSDGTVYVGSTDGTLYALDAKTGEILWTYK 33
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
97-128 |
3.06e-03 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 39.69 E-value: 3.06e-03
10 20 30
....*....|....*....|....*....|..
gi 160346546 97 TPIVNGRYLFVTTPKDNVYAFDAATGAQLWKY 128
Cdd:pfam13360 202 GPILDGDLLYVVSDDGELYALDRATGAVVWKT 233
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