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Conserved domains on  [gi|155543553|gb|ABU24253|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Clinocottus embryum]

Protein Classification

complex I subunit 1 family protein( domain architecture ID 103)

complex I subunit 1 family protein similar to NADH dehydrogenase subunit 1, which is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

EC:  7.1.1.-
Gene Ontology:  GO:0016655|GO:0016020
PubMed:  23417064|24059520
SCOP:  4005664

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06076 super family cl00469
NADH-quinone oxidoreductase subunit NuoH;
3-163 5.54e-118

NADH-quinone oxidoreductase subunit NuoH;


The actual alignment was detected with superfamily member MTH00134:

Pssm-ID: 469782  Cd Length: 324  Bit Score: 336.19  E-value: 5.54e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553   3 GGFPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 82
Cdd:MTH00134 164 GGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 243

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  83 SASLFLGASHIPALSELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPTALAGLPPQ 162
Cdd:MTH00134 244 SAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQ 323


                 .
gi 155543553 163 L 163
Cdd:MTH00134 324 L 324
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 3-163 5.54e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 336.19  E-value: 5.54e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553   3 GGFPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 82
Cdd:MTH00134 164 GGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 243

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  83 SASLFLGASHIPALSELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPTALAGLPPQ 162
Cdd:MTH00134 244 SAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQ 323


                 .
gi 155543553 163 L 163
Cdd:MTH00134 324 L 324
NADHdh pfam00146
NADH dehydrogenase;
3-148 2.65e-52

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 168.04  E-value: 2.65e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553    3 GGFPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 82
Cdd:pfam00146 156 GSLSLSEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSAL 235

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 155543553   83 SASLFLGASHIPALSeLTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 148
Cdd:pfam00146 236 AVTLFLGGWLGPFPL-PGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 14-148 8.25e-46

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 152.21  E-value: 8.25e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  14 QEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSASLFLGASHI 93
Cdd:COG1005  181 AGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGWLG 260

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  94 PALSELTT-----INLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 148
Cdd:COG1005  261 PFPILPLGglpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 3-163 5.54e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 336.19  E-value: 5.54e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553   3 GGFPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 82
Cdd:MTH00134 164 GGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 243

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  83 SASLFLGASHIPALSELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPTALAGLPPQ 162
Cdd:MTH00134 244 SAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQ 323


                 .
gi 155543553 163 L 163
Cdd:MTH00134 324 L 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 3-162 1.94e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 296.53  E-value: 1.94e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553   3 GGFPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 82
Cdd:MTH00071 163 GGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  83 SASLFLGASHIPALSELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPTALAGLPPQ 162
Cdd:MTH00071 243 STILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPPM 322
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-163 9.31e-100

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 289.87  E-value: 9.31e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553   3 GGFPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 82
Cdd:MTH00111 163 GGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  83 SASLFLGASHIPALSELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPTALAGLPPQ 162
Cdd:MTH00111 243 TTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322


                 .
gi 155543553 163 L 163
Cdd:MTH00111 323 L 323
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 3-163 6.04e-92

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 269.96  E-value: 6.04e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553   3 GGFPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 82
Cdd:MTH00104 158 GSFTLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNAL 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  83 SASLFLGASHIPALSELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPTALAGLPPQ 162
Cdd:MTH00104 238 TTILFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQ 317


                 .
gi 155543553 163 L 163
Cdd:MTH00104 318 T 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 3-161 1.79e-75

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 227.49  E-value: 1.79e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553   3 GGFPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 82
Cdd:MTH00218 160 GGFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTL 239

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 155543553  83 SASLFLGASHipalselTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPTALAGLPP 161
Cdd:MTH00218 240 SVILFLGTSL-------TTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 3-161 6.89e-73

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 221.39  E-value: 6.89e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553   3 GGFPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 82
Cdd:MTH00040 162 GSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLL 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  83 SASLFLGA-SHIPALSELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPTALAGLPP 161
Cdd:MTH00040 242 SVILFLGGgSPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 3-145 1.68e-56

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 179.30  E-value: 1.68e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553   3 GGFPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 82
Cdd:MTH00143 159 GSFSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLL 238

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 155543553  83 SASLFLGASHIpaLSELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAL 145
Cdd:MTH00143 239 TVVLFFGGSSV--LFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 3-158 2.61e-55

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 176.09  E-value: 2.61e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553   3 GGFPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 82
Cdd:MTH00195 160 GSFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVL 239

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 155543553  83 SASLFLGAShipalselTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPTALAG 158
Cdd:MTH00195 240 TTILFLGGG--------GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 3-147 1.39e-52

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 169.18  E-value: 1.39e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553   3 GGFPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 82
Cdd:MTH00193 160 GSFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSML 239

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 155543553  83 SASLFLGashipalSELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVI 147
Cdd:MTH00193 240 FVLMFLG-------GDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLL 297
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 13-161 2.02e-52

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 169.14  E-value: 2.02e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  13 AQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSASLFLGASH 92
Cdd:MTH00054 172 AQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLGGWL 251

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 155543553  93 IPALSELTTINLM---TKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPTALAGLPP 161
Cdd:MTH00054 252 VISGPTSYFSNFVwfgIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
NADHdh pfam00146
NADH dehydrogenase;
3-148 2.65e-52

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 168.04  E-value: 2.65e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553    3 GGFPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 82
Cdd:pfam00146 156 GSLSLSEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSAL 235

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 155543553   83 SASLFLGASHIPALSeLTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 148
Cdd:pfam00146 236 AVTLFLGGWLGPFPL-PGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 5-152 1.15e-50

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 164.05  E-value: 1.15e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553   5 FPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSA 84
Cdd:MTH00225 161 YNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 155543553  85 SLFLGashipALSELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLAL 152
Cdd:MTH00225 241 ILFFG-----GFFVTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 17-161 1.46e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 159.52  E-value: 1.46e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  17 VWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSASLFLG--ASHIP 94
Cdd:MTH00216 181 IWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLGgwLSPIK 260

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 155543553  95 ALSELTTInLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPTALAGLPP 161
Cdd:MTH00216 261 YFKGGAGW-FGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 14-148 8.25e-46

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 152.21  E-value: 8.25e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  14 QEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSASLFLGASHI 93
Cdd:COG1005  181 AGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGWLG 260

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  94 PALSELTT-----INLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 148
Cdd:COG1005  261 PFPILPLGglpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 12-161 6.03e-44

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 147.86  E-value: 6.03e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  12 VAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSASLFLG-- 89
Cdd:MTH00029 176 ISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGgw 255

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  90 --------------ASHIPALSELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPTA 155
Cdd:MTH00029 256 lspldgiptppeafSIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGILIG 335


                 ....*.
gi 155543553 156 LAGLPP 161
Cdd:MTH00029 336 FNGVPP 341
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
3-148 2.00e-42

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 143.41  E-value: 2.00e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553   3 GGFPFQTFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 82
Cdd:PRK06076 170 GSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSAL 249

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 155543553  83 SASLFLGASHIPALSE---LTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 148
Cdd:PRK06076 250 ITTLFLGGWLPPFPLGggiPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 18-147 6.25e-42

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 141.84  E-value: 6.25e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  18 WLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSASLFLGASHIPALS 97
Cdd:MTH00010 175 WILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTSFIPSIFIS 254

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 155543553  98 ELTtinLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVI 147
Cdd:MTH00010 255 DLM---LILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM 301
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 29-143 1.82e-28

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 106.14  E-value: 1.82e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  29 MWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSASLFLGASHIPALselttinlmtka 108
Cdd:MTH00090 172 PFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLMLF------------ 239

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 155543553 109 aLLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTL 143
Cdd:MTH00090 240 -LIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 18-143 3.42e-22

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 89.60  E-value: 3.42e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  18 WLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSASLFLGAShipALS 97
Cdd:MTH00058 172 LSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGG---FVS 248

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 155543553  98 ELTTINLMtkaallsvVFLWVRASYPRFRYDQLMHLIWKNFLPLTL 143
Cdd:MTH00058 249 IMLLFHLL--------FFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
 32-143 3.82e-18

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 79.61  E-value: 3.82e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  32 ISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSASLFLGASHIP----ALSELTTINLM-- 105
Cdd:CHL00032 220 ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSipyiFIPELFEINKTgg 299

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 155543553 106 ------------TKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTL 143
Cdd:CHL00032 300 vfgttigifitlAKTYLFLFISITTRWTLPRLRMDQLLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
9-148 2.92e-15

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 70.98  E-value: 2.92e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553   9 TFNVAQEAVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSASLFL 88
Cdd:COG0650  163 AYQAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLFL 242

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543553  89 GAShIPALSELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 148
Cdd:COG0650  243 PWG-IALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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