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Conserved domains on  [gi|155543551|gb|ABU24252|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Clinocottus recalvus]

Protein Classification

complex I subunit 1 family protein( domain architecture ID 103)

complex I subunit 1 family protein similar to NADH dehydrogenase subunit 1, which is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

EC:  7.1.1.-
Gene Ontology:  GO:0016655|GO:0016020
PubMed:  23417064|24059520
SCOP:  4005664

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06076 super family cl00469
NADH-quinone oxidoreductase subunit NuoH;
1-168 1.69e-122

NADH-quinone oxidoreductase subunit NuoH;


The actual alignment was detected with superfamily member MTH00134:

Pssm-ID: 469782  Cd Length: 324  Bit Score: 347.75  E-value: 1.69e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:MTH00134 157 LSVIIFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551  81 ILLMNTLSASLFLGASHIPTLSELTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIWHLALPTA 160
Cdd:MTH00134 237 ILLMNTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIA 316


                 ....*...
gi 155543551 161 LAGLPPQL 168
Cdd:MTH00134 317 FAGLPPQL 324
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-168 1.69e-122

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 347.75  E-value: 1.69e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:MTH00134 157 LSVIIFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551  81 ILLMNTLSASLFLGASHIPTLSELTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIWHLALPTA 160
Cdd:MTH00134 237 ILLMNTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIA 316


                 ....*...
gi 155543551 161 LAGLPPQL 168
Cdd:MTH00134 317 FAGLPPQL 324
NADHdh pfam00146
NADH dehydrogenase;
1-153 3.08e-55

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 176.12  E-value: 3.08e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551    1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:pfam00146 149 LAVVLLAGSLSLSEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYAN 228

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 155543551   81 ILLMNTLSASLFLGASHIPtLSELTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIW 153
Cdd:pfam00146 229 MFLMSALAVTLFLGGWLGP-FPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-153 2.89e-47

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 156.06  E-value: 2.89e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   4 IIFTGGFTLQTFNTAQE-TVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIL 82
Cdd:COG1005  165 VLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMF 244

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 155543551  83 LMNTLSASLFLGASHIPTLSELTT-----INLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIW 153
Cdd:COG1005  245 LVSALATTLFLGGWLGPFPILPLGglpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-168 1.69e-122

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 347.75  E-value: 1.69e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:MTH00134 157 LSVIIFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551  81 ILLMNTLSASLFLGASHIPTLSELTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIWHLALPTA 160
Cdd:MTH00134 237 ILLMNTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIA 316


                 ....*...
gi 155543551 161 LAGLPPQL 168
Cdd:MTH00134 317 FAGLPPQL 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-167 4.37e-106

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 306.16  E-value: 4.37e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:MTH00071 156 LCLILLTGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551  81 ILLMNTLSASLFLGASHIPTLSELTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIWHLALPTA 160
Cdd:MTH00071 236 ILMMNTLSTILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPIS 315


                 ....*..
gi 155543551 161 LAGLPPQ 167
Cdd:MTH00071 316 TLGIPPM 322
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-168 1.25e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 294.88  E-value: 1.25e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:MTH00111 156 LSLILLSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYAN 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551  81 ILLMNTLSASLFLGASHIPTLSELTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIWHLALPTA 160
Cdd:MTH00111 236 ILLMNTLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPIS 315


                 ....*...
gi 155543551 161 LAGLPPQL 168
Cdd:MTH00111 316 LAGLPPQL 323
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-168 3.36e-93

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 273.04  E-value: 3.36e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:MTH00104 151 LSVLLMNGSFTLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYAN 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551  81 ILLMNTLSASLFLGASHIPTLSELTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIWHLALPTA 160
Cdd:MTH00104 231 IIMMNALTTILFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIM 310


                 ....*...
gi 155543551 161 LAGLPPQL 168
Cdd:MTH00104 311 TASIPPQT 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 1-166 3.77e-78

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 234.80  E-value: 3.77e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:MTH00218 153 LSLIILTGGFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMN 232

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551  81 ILLMNTLSASLFLGASHiptlselTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIWHLALPTA 160
Cdd:MTH00218 233 ILFMNTLSVILFLGTSL-------TTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLS 305


                 ....*.
gi 155543551 161 LAGLPP 166
Cdd:MTH00218 306 FASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-166 9.75e-76

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 229.09  E-value: 9.75e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:MTH00040 155 LSLVIFSGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYAN 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551  81 ILLMNTLSASLFLGA-SHIPTLSELTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIWHLALPT 159
Cdd:MTH00040 235 IIFMNLLSVILFLGGgSPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLS 314


                 ....*..
gi 155543551 160 ALAGLPP 166
Cdd:MTH00040 315 LLNILPP 321
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 5-150 6.36e-57

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 180.45  E-value: 6.36e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   5 IFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 84
Cdd:MTH00143 156 FLSGSFSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFM 235

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 155543551  85 NTLSASLFLGASHIPTLseLTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAF 150
Cdd:MTH00143 236 SLLTVVLFFGGSSVLFL--LGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
NADHdh pfam00146
NADH dehydrogenase;
1-153 3.08e-55

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 176.12  E-value: 3.08e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551    1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:pfam00146 149 LAVVLLAGSLSLSEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYAN 228

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 155543551   81 ILLMNTLSASLFLGASHIPtLSELTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIW 153
Cdd:pfam00146 229 MFLMSALAVTLFLGGWLGP-FPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-152 1.24e-54

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 174.57  E-value: 1.24e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:MTH00193 153 LSFIFLIGSFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSS 232

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 155543551  81 ILLMNTLSASLFLGashiptlSELTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVI 152
Cdd:MTH00193 233 ILFMSMLFVLMFLG-------GDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLL 297
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 1-163 1.62e-54

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 174.16  E-value: 1.62e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:MTH00195 153 LCPICLAGSFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSN 232

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551  81 ILLMNTLSASLFLGAShiptlselTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIWHLALPTA 160
Cdd:MTH00195 233 IIFMSVLTTILFLGGG--------GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFA 304


                 ...
gi 155543551 161 LAG 163
Cdd:MTH00195 305 LNS 307
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-166 1.34e-53

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 172.60  E-value: 1.34e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:MTH00054 155 ISVVLCVGSLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCH 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551  81 ILLMNTLSASLFLGASHIPTLSELTTINLM---IKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIWHLAL 157
Cdd:MTH00054 235 IILMSTFGVILFLGGWLVISGPTSYFSNFVwfgIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGI 314


                 ....*....
gi 155543551 158 PTALAGLPP 166
Cdd:MTH00054 315 LIGFNALPP 323
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 1-157 9.02e-53

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 169.83  E-value: 9.02e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:MTH00225 152 LSIVFLVLTYNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGS 231

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 155543551  81 ILLMNTLSASLFLGAshiptLSELTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIWHLAL 157
Cdd:MTH00225 232 ILFMSMLTSILFFGG-----FFVTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 22-166 4.98e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 158.36  E-value: 4.98e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551  22 VWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSASLFLG--ASHIP 99
Cdd:MTH00216 181 IWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLGgwLSPIK 260

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 155543551 100 TLSELTTInLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIWHLALPTALAGLPP 166
Cdd:MTH00216 261 YFKGGAGW-FGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-153 2.89e-47

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 156.06  E-value: 2.89e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   4 IIFTGGFTLQTFNTAQE-TVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIL 82
Cdd:COG1005  165 VLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMF 244

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 155543551  83 LMNTLSASLFLGASHIPTLSELTT-----INLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIW 153
Cdd:COG1005  245 LVSALATTLFLGGWLGPFPILPLGglpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-153 1.01e-44

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 149.57  E-value: 1.01e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:PRK06076 163 LAVVLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYIN 242

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 155543551  81 ILLMNTLSASLFLGASHIPTLSE---LTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIW 153
Cdd:PRK06076 243 MILVSALITTLFLGGWLPPFPLGggiPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-166 2.46e-42

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 144.00  E-value: 2.46e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFNTAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 80
Cdd:MTH00029 160 ISVILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSN 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551  81 ILLMNTLSASLFLG----------------ASHIPTLSELTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFL 144
Cdd:MTH00029 240 IILMSCMMTIFFLGgwlspldgiptppeafSIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYL 319

                        170       180
                 ....*....|....*....|..
gi 155543551 145 PLTLAFVIWHLALPTALAGLPP 166
Cdd:MTH00029 320 PLSLGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 1-152 1.59e-41

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 141.07  E-value: 1.59e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   1 LNLIIFTGGFTLQTFN----TAQETVWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLA 76
Cdd:MTH00010 149 MSLILLSALLILQTFSfskiIMSQYSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMA 228

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 155543551  77 EYANILLMNTLSASLFLGASHIPTLSELTtinLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVI 152
Cdd:MTH00010 229 EYANILIMSLFTSVFFTSFIPSIFISDLM---LILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM 301
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 34-152 5.00e-28

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 105.37  E-value: 5.00e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551  34 MWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSASLFLGAShiptlselttinlMIKA 113
Cdd:MTH00090 172 PFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFS-------------FLML 238

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 155543551 114 ALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVI 152
Cdd:MTH00090 239 FLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLG 277
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 8-152 6.65e-22

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 89.21  E-value: 6.65e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   8 GGFTLQTFNTAQETVWLILPtwPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 87
Cdd:MTH00058 159 GSYSLVDFYYSGWLSVLLFP--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWL 236

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 155543551  88 SASLFLGASHIptlSELTTINLMIkaallsvvFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVI 152
Cdd:MTH00058 237 GSVLFFGGGFV---SIMLLFHLLF--------FMWARATLPRVRYDYFVNFFWEYCLVLLILSLF 290
ndhA CHL00032
NADH dehydrogenase subunit 1
 37-148 2.27e-17

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 77.68  E-value: 2.27e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551  37 ISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSASLFLGASH--IPTLSEL---------- 104
Cdd:CHL00032 220 ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNlsIPYIFIPelfeinktgg 299

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 155543551 105 ---TTINLMI---KAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTL 148
Cdd:CHL00032 300 vfgTTIGIFItlaKTYLFLFISITTRWTLPRLRMDQLLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
3-153 5.04e-16

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 73.29  E-value: 5.04e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543551   3 LIIFTGGFTLQTFNTAQET---VWLILPTWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYA 79
Cdd:COG0650  149 LALLAGSTSLSDIVAYQAAhgpLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAAL 228

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 155543551  80 NILLMNTLSASLFLGAShIPTLSELTTINLMIKAALLSVVFLWVRASYPRFRYDQLMHLIWKNFLPLTLAFVIW 153
Cdd:COG0650  229 KLFVLLSLFVNLFLPWG-IALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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