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Conserved domains on  [gi|155543519|gb|ABU24236|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Hemilepidotus hemilepidotus]

Protein Classification

complex I subunit 1 family protein( domain architecture ID 103)

complex I subunit 1 family protein similar to NADH dehydrogenase subunit 1, which is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

EC:  7.1.1.-
Gene Ontology:  GO:0016655|GO:0016020
PubMed:  23417064|24059520
SCOP:  4005664

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06076 super family cl00469
NADH-quinone oxidoreductase subunit NuoH;
1-161 6.08e-118

NADH-quinone oxidoreductase subunit NuoH;


The actual alignment was detected with superfamily member MTH00134:

Pssm-ID: 469782  Cd Length: 324  Bit Score: 335.81  E-value: 6.08e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:MTH00134 164 GGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 243

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  81 FATLFLGASHIPSIPELTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIWHLALPIAFAGLPPQ 160
Cdd:MTH00134 244 SAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQ 323


                 .
gi 155543519 161 L 161
Cdd:MTH00134 324 L 324
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-161 6.08e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 335.81  E-value: 6.08e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:MTH00134 164 GGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 243

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  81 FATLFLGASHIPSIPELTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIWHLALPIAFAGLPPQ 160
Cdd:MTH00134 244 SAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQ 323


                 .
gi 155543519 161 L 161
Cdd:MTH00134 324 L 324
NADHdh pfam00146
NADH dehydrogenase;
1-146 1.61e-52

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 168.81  E-value: 1.61e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519    1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:pfam00146 156 GSLSLSEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSAL 235

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 155543519   81 FATLFLGASHIPsIPELTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIW 146
Cdd:pfam00146 236 AVTLFLGGWLGP-FPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 12-146 1.26e-45

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 151.82  E-value: 1.26e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  12 QESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTLFATLFLGASHI 91
Cdd:COG1005  181 AGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGWLG 260

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  92 PSIPELT-----AINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIW 146
Cdd:COG1005  261 PFPILPLgglpgILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-161 6.08e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 335.81  E-value: 6.08e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:MTH00134 164 GGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 243

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  81 FATLFLGASHIPSIPELTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIWHLALPIAFAGLPPQ 160
Cdd:MTH00134 244 SAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQ 323


                 .
gi 155543519 161 L 161
Cdd:MTH00134 324 L 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-160 1.88e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 293.84  E-value: 1.88e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:MTH00071 163 GGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  81 FATLFLGASHIPSIPELTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIWHLALPIAFAGLPPQ 160
Cdd:MTH00071 243 STILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPPM 322
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-161 6.48e-99

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 287.56  E-value: 6.48e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:MTH00111 163 GGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  81 FATLFLGASHIPSIPELTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIWHLALPIAFAGLPPQ 160
Cdd:MTH00111 243 TTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322


                 .
gi 155543519 161 L 161
Cdd:MTH00111 323 L 323
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-161 1.87e-91

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 268.42  E-value: 1.87e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:MTH00104 158 GSFTLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNAL 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  81 FATLFLGASHIPSIPELTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIWHLALPIAFAGLPPQ 160
Cdd:MTH00104 238 TTILFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQ 317


                 .
gi 155543519 161 L 161
Cdd:MTH00104 318 T 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 1-159 5.53e-74

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 223.63  E-value: 5.53e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:MTH00218 160 GGFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTL 239

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 155543519  81 FATLFLGASHipsipelTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIWHLALPIAFAGLPP 159
Cdd:MTH00218 240 SVILFLGTSL-------TTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-159 2.05e-70

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 215.22  E-value: 2.05e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:MTH00040 162 GSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLL 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  81 FATLFLGA-SHIPSIPELTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIWHLALPIAFAGLPP 159
Cdd:MTH00040 242 SVILFLGGgSPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 1-145 7.76e-54

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 172.36  E-value: 7.76e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:MTH00143 159 GSFSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLL 238

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 155543519  81 FATLFLGASHIPSIpeLTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALII 145
Cdd:MTH00143 239 TVVLFFGGSSVLFL--LGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILV 301
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-159 1.84e-53

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 171.83  E-value: 1.84e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:MTH00054 162 GSLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTF 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  81 FATLFLGASHIPSIPELTAINLM---TKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIWHLALPIAFAGL 157
Cdd:MTH00054 242 GVILFLGGWLVISGPTSYFSNFVwfgIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNAL 321


                 ..
gi 155543519 158 PP 159
Cdd:MTH00054 322 PP 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 1-156 2.71e-53

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 171.08  E-value: 2.71e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:MTH00195 160 GSFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVL 239

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 155543519  81 FATLFLGASHIPSipeltainLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIWHLALPIAFAG 156
Cdd:MTH00195 240 TTILFLGGGGTII--------VALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
1-146 1.61e-52

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 168.81  E-value: 1.61e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519    1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:pfam00146 156 GSLSLSEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSAL 235

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 155543519   81 FATLFLGASHIPsIPELTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIW 146
Cdd:pfam00146 236 AVTLFLGGWLGP-FPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-154 8.57e-52

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 166.87  E-value: 8.57e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:MTH00193 160 GSFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSML 239

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 155543519  81 FATLFLGAShipsipeLTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIWHLALPIAF 154
Cdd:MTH00193 240 FVLMFLGGD-------LLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 14-159 9.27e-50

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 162.21  E-value: 9.27e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  14 SVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTLFATLFLGA-SHIP 92
Cdd:MTH00216 180 GIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLGGwLSPI 259

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 155543519  93 SIPELTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIWHLALPIAFAGLPP 159
Cdd:MTH00216 260 KYFKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 3-150 1.29e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 158.66  E-value: 1.29e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   3 FTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTLFA 82
Cdd:MTH00225 161 YNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 155543519  83 TLFLGASHipsipELTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIWHLAL 150
Cdd:MTH00225 241 ILFFGGFF-----VTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-159 2.80e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 154.02  E-value: 2.80e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:MTH00029 167 GSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCM 246

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  81 FATLFLGA-----SHIPSIPEL-----------TAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALI 144
Cdd:MTH00029 247 MTIFFLGGwlsplDGIPTPPEAfsifeqiasskSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLV 326

                        170
                 ....*....|....*
gi 155543519 145 IWHLALPIAFAGLPP 159
Cdd:MTH00029 327 ILTAGILIGFNGVPP 341
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 12-146 1.26e-45

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 151.82  E-value: 1.26e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  12 QESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTLFATLFLGASHI 91
Cdd:COG1005  181 AGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGWLG 260

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  92 PSIPELT-----AINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIW 146
Cdd:COG1005  261 PFPILPLgglpgILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-146 2.09e-43

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 145.72  E-value: 2.09e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:PRK06076 170 GSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSAL 249

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 155543519  81 FATLFLGASHIPSIPE---LTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIW 146
Cdd:PRK06076 250 ITTLFLGGWLPPFPLGggiPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 4-154 8.39e-41

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 138.76  E-value: 8.39e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   4 TLQTFN----VAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMnT 79
Cdd:MTH00010 159 ILQTFSfskiIMSQYSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIM-S 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 155543519  80 LFATLFLgashIPSIPELTAINLM--TKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIwhLALPIAF 154
Cdd:MTH00010 238 LFTSVFF----TSFIPSIFISDLMliLKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPIMF 308
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 27-141 8.42e-27

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 101.90  E-value: 8.42e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  27 MWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTLFATLFLGASHIPSIpeltainlmtka 106
Cdd:MTH00090 172 PFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLMLF------------ 239

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 155543519 107 aLLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTL 141
Cdd:MTH00090 240 -LIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 1-141 4.14e-21

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 86.90  E-value: 4.14e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   1 GGFTLQTFNVAQESVWLILPawPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTL 80
Cdd:MTH00058 159 GSYSLVDFYYSGWLSVLLFP--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWL 236

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 155543519  81 FATLFLGASHIPSIpelTAINLmtkaallsLLFLWVRASYPRFRYDQLMHLVWKNFLPLTL 141
Cdd:MTH00058 237 GSVLFFGGGFVSIM---LLFHL--------LFFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
 30-141 1.20e-19

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 83.85  E-value: 1.20e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519  30 ISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNiLLMNTLFAT-LFLGASHIP----SIPELTAINLM- 103
Cdd:CHL00032 220 ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLN-LLVSSLFVTvLYLGGWNLSipyiFIPELFEINKTg 298

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 155543519 104 -------------TKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTL 141
Cdd:CHL00032 299 gvfgttigifitlAKTYLFLFISITTRWTLPRLRMDQLLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
3-146 2.30e-15

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 71.37  E-value: 2.30e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155543519   3 FTLQTFNVAQESVWLILPAWPLAAMWYISPLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTLFA 82
Cdd:COG0650  159 SDIVAYQAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFV 238

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 155543519  83 TLFLGAShIPSIPELTAINLMTKAALLSLLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIW 146
Cdd:COG0650  239 NLFLPWG-IALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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