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Conserved domains on  [gi|154354276|gb|ABS76225|]
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arginyl tRNA synthetase, partial [Mastigocladus laminosus B6A]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ArgS super family cl33743
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA ...
 52-115 5.63e-07

Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


The actual alignment was detected with superfamily member COG0018:

Pssm-ID: 439789 [Multi-domain]  Cd Length: 574  Bit Score: 47.06  E-value: 5.63e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 154354276  52 YITGLALQLSKYEKIPAMEIAEAIASHLSANSaGVFSIQIVPPGWIHLELAHPVLASWLQRLVE 115
Cdd:COG0018   40 YATNVAMQLAKPLKKNPREIAEEIAEALDADP-LVEKVEIAGPGFINFFLSPAALAAVLKEILA 102
 
Name Accession Description Interval E-value
ArgS COG0018
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA ...
 52-115 5.63e-07

Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439789 [Multi-domain]  Cd Length: 574  Bit Score: 47.06  E-value: 5.63e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 154354276  52 YITGLALQLSKYEKIPAMEIAEAIASHLSANSaGVFSIQIVPPGWIHLELAHPVLASWLQRLVE 115
Cdd:COG0018   40 YATNVAMQLAKPLKKNPREIAEEIAEALDADP-LVEKVEIAGPGFINFFLSPAALAAVLKEILA 102
Arg_tRNA_synt_N smart01016
Arginyl tRNA synthetase N terminal dom; This domain is found at the amino terminus of Arginyl ...
 52-97 3.19e-05

Arginyl tRNA synthetase N terminal dom; This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.


Pssm-ID: 214975 [Multi-domain]  Cd Length: 85  Bit Score: 39.88  E-value: 3.19e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 154354276    52 YITGLALQLSKYEKIPAMEIAEAIASHLSAnSAGVFSIQIVPPGWI 97
Cdd:smart01016  37 YATNVAFRLAKKLKKNPRELAEEIAEKLPK-SDLVEKVEIAGPGFI 81
Arg_tRNA_synt_N pfam03485
Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of ...
 52-97 3.90e-04

Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.


Pssm-ID: 460943 [Multi-domain]  Cd Length: 83  Bit Score: 36.83  E-value: 3.90e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 154354276   52 YITGLALQLSKYEKIPAMEIAEAIASHLSaNSAGVFSIQIVPPGWI 97
Cdd:pfam03485  35 YATNVAMQLAKKLKKNPREIAEEIAEKLE-KSDIIEKVEVAGPGFI 79
 
Name Accession Description Interval E-value
ArgS COG0018
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA ...
 52-115 5.63e-07

Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439789 [Multi-domain]  Cd Length: 574  Bit Score: 47.06  E-value: 5.63e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 154354276  52 YITGLALQLSKYEKIPAMEIAEAIASHLSANSaGVFSIQIVPPGWIHLELAHPVLASWLQRLVE 115
Cdd:COG0018   40 YATNVAMQLAKPLKKNPREIAEEIAEALDADP-LVEKVEIAGPGFINFFLSPAALAAVLKEILA 102
Arg_tRNA_synt_N smart01016
Arginyl tRNA synthetase N terminal dom; This domain is found at the amino terminus of Arginyl ...
 52-97 3.19e-05

Arginyl tRNA synthetase N terminal dom; This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.


Pssm-ID: 214975 [Multi-domain]  Cd Length: 85  Bit Score: 39.88  E-value: 3.19e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 154354276    52 YITGLALQLSKYEKIPAMEIAEAIASHLSAnSAGVFSIQIVPPGWI 97
Cdd:smart01016  37 YATNVAFRLAKKLKKNPRELAEEIAEKLPK-SDLVEKVEIAGPGFI 81
Arg_tRNA_synt_N pfam03485
Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of ...
 52-97 3.90e-04

Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.


Pssm-ID: 460943 [Multi-domain]  Cd Length: 83  Bit Score: 36.83  E-value: 3.90e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 154354276   52 YITGLALQLSKYEKIPAMEIAEAIASHLSaNSAGVFSIQIVPPGWI 97
Cdd:pfam03485  35 YATNVAMQLAKKLKKNPREIAEEIAEKLE-KSDIIEKVEVAGPGFI 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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