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Conserved domains on  [gi|147744447|gb|ABQ51136|]
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MPF2-like, partial [Physalis coztomatl]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
K-box super family cl03234
K-box region; The K-box region is commonly found associated with SRF-type transcription ...
 50-126 6.35e-08

K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation.


The actual alignment was detected with superfamily member pfam01486:

Pssm-ID: 460228 [Multi-domain]  Cd Length: 91  Bit Score: 48.23  E-value: 6.35e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 147744447   50 RLRKEVADKTRELRQMKGEELEGLSLEELQQIEKRLEAGFNRVLEIKGTRIMDEIANLQRKGAELMEENKKLKHNME 126
Cdd:pfam01486  15 KLKKEIENLQRSQRQLLGEDLSSLSLKELQQLEQQLEKSLKRIRSRKNQLLLEQIEELKKKERILQEENKELRKKLE 91
MADS super family cl00109
MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic ...
 1-30 3.39e-07

MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.


The actual alignment was detected with superfamily member cd00265:

Pssm-ID: 469617 [Multi-domain]  Cd Length: 77  Bit Score: 46.01  E-value: 3.39e-07
                         10        20        30
                 ....*....|....*....|....*....|
gi 147744447   1 IIFSSTGKLFDFSSSSMKDILGKYKLQSAN 30
Cdd:cd00265   45 IIFSSSGKLYEFSSPSMEKIIERYQKTSGS 74
 
Name Accession Description Interval E-value
K-box pfam01486
K-box region; The K-box region is commonly found associated with SRF-type transcription ...
 50-126 6.35e-08

K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation.


Pssm-ID: 460228 [Multi-domain]  Cd Length: 91  Bit Score: 48.23  E-value: 6.35e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 147744447   50 RLRKEVADKTRELRQMKGEELEGLSLEELQQIEKRLEAGFNRVLEIKGTRIMDEIANLQRKGAELMEENKKLKHNME 126
Cdd:pfam01486  15 KLKKEIENLQRSQRQLLGEDLSSLSLKELQQLEQQLEKSLKRIRSRKNQLLLEQIEELKKKERILQEENKELRKKLE 91
MADS_MEF2_like cd00265
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ...
 1-30 3.39e-07

MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.


Pssm-ID: 238165 [Multi-domain]  Cd Length: 77  Bit Score: 46.01  E-value: 3.39e-07
                         10        20        30
                 ....*....|....*....|....*....|
gi 147744447   1 IIFSSTGKLFDFSSSSMKDILGKYKLQSAN 30
Cdd:cd00265   45 IIFSSSGKLYEFSSPSMEKIIERYQKTSGS 74
 
Name Accession Description Interval E-value
K-box pfam01486
K-box region; The K-box region is commonly found associated with SRF-type transcription ...
 50-126 6.35e-08

K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation.


Pssm-ID: 460228 [Multi-domain]  Cd Length: 91  Bit Score: 48.23  E-value: 6.35e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 147744447   50 RLRKEVADKTRELRQMKGEELEGLSLEELQQIEKRLEAGFNRVLEIKGTRIMDEIANLQRKGAELMEENKKLKHNME 126
Cdd:pfam01486  15 KLKKEIENLQRSQRQLLGEDLSSLSLKELQQLEQQLEKSLKRIRSRKNQLLLEQIEELKKKERILQEENKELRKKLE 91
MADS_MEF2_like cd00265
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ...
 1-30 3.39e-07

MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.


Pssm-ID: 238165 [Multi-domain]  Cd Length: 77  Bit Score: 46.01  E-value: 3.39e-07
                         10        20        30
                 ....*....|....*....|....*....|
gi 147744447   1 IIFSSTGKLFDFSSSSMKDILGKYKLQSAN 30
Cdd:cd00265   45 IIFSSSGKLYEFSSPSMEKIIERYQKTSGS 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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