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Conserved domains on  [gi|146231537|gb|ABQ12874|]
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cytochrome b, partial (mitochondrion) [Hipposideros ater]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-137 2.69e-103

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 299.63  E-value: 2.69e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   1 NIRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYL 80
Cdd:MTH00100   3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 146231537  81 HANGASIFFICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00100  83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMS 139
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-137 2.69e-103

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 299.63  E-value: 2.69e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   1 NIRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYL 80
Cdd:MTH00100   3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 146231537  81 HANGASIFFICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00100  83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMS 139
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-137 3.42e-57

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 176.40  E-value: 3.42e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   7 PLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGAS 86
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 146231537  87 IFFICLFLHVGRGIYYGSY--TYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMS 133
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-137 7.83e-51

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 159.85  E-value: 7.83e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   16 FIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASIFFICLFLH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 146231537   96 VGRGIYYGSYTYT--ETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMS 124
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-137 2.80e-47

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 156.49  E-value: 2.80e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   7 PLFKIINDsFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGAS 86
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 146231537  87 IFFICLFLHVGRGIYYGSYTYTE--TWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLS 150
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-137 2.69e-103

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 299.63  E-value: 2.69e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   1 NIRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYL 80
Cdd:MTH00100   3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 146231537  81 HANGASIFFICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00100  83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMS 139
CYTB MTH00074
cytochrome b; Provisional
 1-137 3.05e-91

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 268.86  E-value: 3.05e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   1 NIRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYL 80
Cdd:MTH00074   4 PIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNI 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 146231537  81 HANGASIFFICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00074  84 HANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMS 140
CYTB MTH00119
cytochrome b; Provisional
 1-137 3.10e-91

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 269.08  E-value: 3.10e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   1 NIRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYL 80
Cdd:MTH00119   4 NLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 146231537  81 HANGASIFFICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00119  84 HANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMS 140
CYTB MTH00131
cytochrome b; Provisional
 1-137 8.91e-90

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 265.36  E-value: 8.91e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   1 NIRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYL 80
Cdd:MTH00131   3 SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 146231537  81 HANGASIFFICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00131  83 HANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 139
CYTB MTH00156
cytochrome b; Provisional
 9-137 1.96e-85

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 253.17  E-value: 1.96e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   9 FKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASIF 88
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 146231537  89 FICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMS 129
CYTB MTH00191
cytochrome b; Provisional
 2-137 3.50e-85

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 252.91  E-value: 3.50e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   2 IRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLH 81
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 146231537  82 ANGASIFFICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMS 136
CYTB MTH00145
cytochrome b; Provisional
 2-137 7.61e-82

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 244.81  E-value: 7.61e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   2 IRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLH 81
Cdd:MTH00145   5 LRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 146231537  82 ANGASIFFICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00145  85 ANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMS 140
CYTB MTH00034
cytochrome b; Validated
 2-137 2.44e-80

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 241.15  E-value: 2.44e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   2 IRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLH 81
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 146231537  82 ANGASIFFICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMS 139
CYTB MTH00016
cytochrome b; Validated
 2-137 3.54e-77

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 233.03  E-value: 3.54e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   2 IRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLH 81
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 146231537  82 ANGASIFFICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMS 140
CYTB MTH00022
cytochrome b; Validated
 2-137 1.51e-66

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 206.09  E-value: 1.51e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   2 IRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLH 81
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 146231537  82 ANGASIFFICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMS 138
CYTB MTH00224
cytochrome b; Provisional
 2-137 3.82e-66

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 204.77  E-value: 3.82e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   2 IRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLH 81
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 146231537  82 ANGASIFFICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMS 140
CYTB MTH00053
cytochrome b; Provisional
 2-137 1.54e-64

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 200.70  E-value: 1.54e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   2 IRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLH 81
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 146231537  82 ANGASIFFICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMS 140
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-137 3.42e-57

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 176.40  E-value: 3.42e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   7 PLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGAS 86
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 146231537  87 IFFICLFLHVGRGIYYGSY--TYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMS 133
CYTB MTH00033
cytochrome b; Provisional
 14-137 5.73e-52

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 168.58  E-value: 5.73e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537  14 DSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASIFFICLF 93
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 146231537  94 LHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMS 136
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-137 7.83e-51

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 159.85  E-value: 7.83e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   16 FIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASIFFICLFLH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 146231537   96 VGRGIYYGSYTYT--ETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMS 124
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-137 2.80e-47

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 156.49  E-value: 2.80e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537   7 PLFKIINDsFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGAS 86
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 146231537  87 IFFICLFLHVGRGIYYGSYTYTE--TWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLS 150
CYTB MTH00086
cytochrome b; Provisional
 10-137 1.09e-41

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 141.23  E-value: 1.09e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537  10 KIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASIFF 89
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 146231537  90 ICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMS 128
CYTB MTH00046
cytochrome b; Validated
 10-137 1.10e-30

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 112.38  E-value: 1.10e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537  10 KIINDSFIDLPTPSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASIFF 89
Cdd:MTH00046   3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 146231537  90 ICLFLHVGRGIYYGSYTYTETWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:MTH00046  83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMS 130
PRK03735 PRK03735
cytochrome b6; Provisional
 31-135 2.47e-22

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 87.84  E-value: 2.47e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537  31 FGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASIFFICLFLHVGRGIYYGSYTYTE- 109
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100
                 ....*....|....*....|....*..
gi 146231537 110 -TWNIGIILLFTIMATAFMGYVLPWGQ 135
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQ 150
petB CHL00070
cytochrome b6
 22-136 5.34e-14

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 65.90  E-value: 5.34e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146231537  22 PSSISSWWNFGSLLGVCLTVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASIFFICLFLHVGRGIY 101
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 146231537 102 YGSYTYTE--TWNIGIILLFTIMATAFMGYVLPWGQM 136
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQI 143
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
86-137 6.84e-12

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 59.18  E-value: 6.84e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 146231537   86 SIFFICLFLHVGRGIYYGSYTYTE--TWNIGIILLFTIMATAFMGYVLPWGQMS 137
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLS 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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