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Conserved domains on  [gi|110684446|gb|ABG87816|]
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conserved hypothetical protein [Clostridium perfringens SM101]

Protein Classification

VanZ family protein( domain architecture ID 10522534)

VanZ family protein; VanZ family protein is an integral membrane protein similar to Enterococcus faecium protein VanZ, which confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te)

Gene Ontology:  GO:0046677|GO:0071555|GO:0005576
PubMed:  7867956

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VanZ pfam04892
VanZ like family; This family contains several examples of the VanZ protein, but also contains ...
 162-215 1.45e-03

VanZ like family; This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.


:

Pssm-ID: 461467  Cd Length: 79  Bit Score: 36.30  E-value: 1.45e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 110684446  162 SLNTVLKFCFFMSLFIESSQvilsLVFPNtkRFFEVNDLMCNTLSGVWGYYIYI 215
Cdd:pfam04892  31 RFLKTLLLGFLYSLSDELHQ----LFVPG--RSFDVDDVILNTLGALIGILLYL 78
 
Name Accession Description Interval E-value
VanZ pfam04892
VanZ like family; This family contains several examples of the VanZ protein, but also contains ...
 162-215 1.45e-03

VanZ like family; This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.


Pssm-ID: 461467  Cd Length: 79  Bit Score: 36.30  E-value: 1.45e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 110684446  162 SLNTVLKFCFFMSLFIESSQvilsLVFPNtkRFFEVNDLMCNTLSGVWGYYIYI 215
Cdd:pfam04892  31 RFLKTLLLGFLYSLSDELHQ----LFVPG--RSFDVDDVILNTLGALIGILLYL 78
 
Name Accession Description Interval E-value
VanZ pfam04892
VanZ like family; This family contains several examples of the VanZ protein, but also contains ...
 162-215 1.45e-03

VanZ like family; This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.


Pssm-ID: 461467  Cd Length: 79  Bit Score: 36.30  E-value: 1.45e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 110684446  162 SLNTVLKFCFFMSLFIESSQvilsLVFPNtkRFFEVNDLMCNTLSGVWGYYIYI 215
Cdd:pfam04892  31 RFLKTLLLGFLYSLSDELHQ----LFVPG--RSFDVDDVILNTLGALIGILLYL 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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