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Conserved domains on  [gi|109657583|gb|ABG36740|]
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maturase K [Sonchus aquatilis]

Protein Classification

maturase K( domain architecture ID 11413986)

maturase K probably assists in splicing its own and other chloroplast group II introns

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
matK CHL00002
maturase K
1-508 0e+00

maturase K


:

Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 904.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583   1 MEKFQSYLGLDRSQQHYFLYPLIFQEYIYVLAHDHGLNRSILLENAGYDNKSSLLIVKRLINRMYQQNFLILSVNNSKQT 80
Cdd:CHL00002   1 MEEFQGYLELDRSRQQDFLYPLLFQEYIYALAHDHGLNRSILLENSGYDNKYSLLIVKRLITRMYQQNHLIISVNDSNQN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583  81 PFLGHNKNFYLQVMSEVSSIIMEIPLSLRLRPSLERKGVVKSDNLRSIHSIFSFLEDNFSHLNYVLDILIPYPAHLEILV 160
Cdd:CHL00002  81 PFLGHNKNFYSQMISEGFAVIVEIPFSLRLVSSLEEKEIAKSQNLRSIHSIFPFLEDKFSHLNYVSDILIPYPIHLEILV 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583 161 QALRYWIKDPSSLHLLRFFLHECHNWDSLIPSNSKKGSSSFskRNHRLFFFLYTSHVCEYESGFLFLRNQSSHLRSTSSG 240
Cdd:CHL00002 161 QTLRYWIKDASSLHLLRFFLHEYCNWNSLITSKKSISFFSK--ENQRLFLFLYNSYVCEYESIFVFLRKQSSHLRSTSSG 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583 241 ALIERIYFYGKIEHLAEVFARAFQANLWLFKDPFMHYVRYQGKSILASKGTFLLMNKWKYYFVNFWKSYFYLWSQPGKIY 320
Cdd:CHL00002 239 VFLERIHFYGKIEHLVEVFRNDFQKTLWLFKDPFIHYVRYQGKSILASKGTPLLMNKWKYYLVNFWQCHFHLWSQPGRIH 318
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583 321 INinQLSNHSFDFLGYRSSVRLKSSMVRSQMLENAFLIENAIKKLETIVPIMPLIGSLAKSKFCNASGHPIGKVIWADLS 400
Cdd:CHL00002 319 IN--QLSNHSFDFLGYLSSVRLNPSVVRSQMLENSFLIDNAIKKFDTIVPIIPLIGSLAKAKFCNVLGHPISKPVWTDLS 396
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583 401 DSDIIDAFGRIYRNFSHYRSGSSKKKSLYRVKYILRLSCARTLARKHKSTVRAFLKRFGSELLEEFFTEEEQVFSLTFPR 480
Cdd:CHL00002 397 DSDIIDRFGRICRNLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVLSLIFPR 476
                        490       500
                 ....*....|....*....|....*...
gi 109657583 481 VSSISRKLSRRRIWYLDIICINDLANNE 508
Cdd:CHL00002 477 TSSTSRRLYRERIWYLDIICINDLVNHE 504
 
Name Accession Description Interval E-value
matK CHL00002
maturase K
1-508 0e+00

maturase K


Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 904.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583   1 MEKFQSYLGLDRSQQHYFLYPLIFQEYIYVLAHDHGLNRSILLENAGYDNKSSLLIVKRLINRMYQQNFLILSVNNSKQT 80
Cdd:CHL00002   1 MEEFQGYLELDRSRQQDFLYPLLFQEYIYALAHDHGLNRSILLENSGYDNKYSLLIVKRLITRMYQQNHLIISVNDSNQN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583  81 PFLGHNKNFYLQVMSEVSSIIMEIPLSLRLRPSLERKGVVKSDNLRSIHSIFSFLEDNFSHLNYVLDILIPYPAHLEILV 160
Cdd:CHL00002  81 PFLGHNKNFYSQMISEGFAVIVEIPFSLRLVSSLEEKEIAKSQNLRSIHSIFPFLEDKFSHLNYVSDILIPYPIHLEILV 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583 161 QALRYWIKDPSSLHLLRFFLHECHNWDSLIPSNSKKGSSSFskRNHRLFFFLYTSHVCEYESGFLFLRNQSSHLRSTSSG 240
Cdd:CHL00002 161 QTLRYWIKDASSLHLLRFFLHEYCNWNSLITSKKSISFFSK--ENQRLFLFLYNSYVCEYESIFVFLRKQSSHLRSTSSG 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583 241 ALIERIYFYGKIEHLAEVFARAFQANLWLFKDPFMHYVRYQGKSILASKGTFLLMNKWKYYFVNFWKSYFYLWSQPGKIY 320
Cdd:CHL00002 239 VFLERIHFYGKIEHLVEVFRNDFQKTLWLFKDPFIHYVRYQGKSILASKGTPLLMNKWKYYLVNFWQCHFHLWSQPGRIH 318
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583 321 INinQLSNHSFDFLGYRSSVRLKSSMVRSQMLENAFLIENAIKKLETIVPIMPLIGSLAKSKFCNASGHPIGKVIWADLS 400
Cdd:CHL00002 319 IN--QLSNHSFDFLGYLSSVRLNPSVVRSQMLENSFLIDNAIKKFDTIVPIIPLIGSLAKAKFCNVLGHPISKPVWTDLS 396
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583 401 DSDIIDAFGRIYRNFSHYRSGSSKKKSLYRVKYILRLSCARTLARKHKSTVRAFLKRFGSELLEEFFTEEEQVFSLTFPR 480
Cdd:CHL00002 397 DSDIIDRFGRICRNLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVLSLIFPR 476
                        490       500
                 ....*....|....*....|....*...
gi 109657583 481 VSSISRKLSRRRIWYLDIICINDLANNE 508
Cdd:CHL00002 477 TSSTSRRLYRERIWYLDIICINDLVNHE 504
MatK_N pfam01824
MatK/TrnK amino terminal region; The function of this region is unknown.
1-335 6.47e-169

MatK/TrnK amino terminal region; The function of this region is unknown.


Pssm-ID: 280070  Cd Length: 331  Bit Score: 480.03  E-value: 6.47e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583    1 MEKFQSYLGLDRSQQHYFLYPLIFQEYIYVLAHDHGLNRSILLENAGYDNKSSLLIVKRLINRMYQQNFLILSVNNSKQT 80
Cdd:pfam01824   1 MEEFQRYLELDRSRQQRFLYPLLFQEYIYALAHDHNLNRSILLENVGYNNKFSLLIVKRLITRMYQQNHLIISTNDSNQN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583   81 PFLGHNKNFYLQVMSEVSSIIMEIPLSLRLRPSLERKGVVKSDNLRSIHSIFSFLEDNFSHLNYVLDILIPYPAHLEILV 160
Cdd:pfam01824  81 PFLGYNKNFYSQMISEGFAVIVEIPFSLRLVSSLEKKEIVKSHNLRSIHSIFPFLEDKFLHLNYVLDILIPYPIHLEILV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583  161 QALRYWIKDPSSLHLLRFFLHECHNWDSLIpsNSKKGSSSFSKRNHRLFFFLYTSHVCEYESGFLFLRNQSSHLRSTSSG 240
Cdd:pfam01824 161 QILRYWIKDASSLHLLRFFLHEYSNWNSFI--TSKKSISFFSKENPRLFLFLYNSYVYEYESFFVFLRKQSSHLRSTSYG 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583  241 ALIERIYFYGKIEHLAEVFARAFQANLWLFKDPFMHYVRYQGKSILASKGTFLLMNKWKYYFVNFWKSYFYLWSQPGKiy 320
Cdd:pfam01824 239 VFLERIYFYGKIEHFVEVFANDFQIILWLFKDPFMHYVRYQGKSILASKGTPLLMNKWKYYLVNFWQCHFYVWFQPGR-- 316
                         330
                  ....*....|....*
gi 109657583  321 ININQLSNHSFDFLG 335
Cdd:pfam01824 317 IHINQLSKHSFDFLG 331
 
Name Accession Description Interval E-value
matK CHL00002
maturase K
1-508 0e+00

maturase K


Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 904.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583   1 MEKFQSYLGLDRSQQHYFLYPLIFQEYIYVLAHDHGLNRSILLENAGYDNKSSLLIVKRLINRMYQQNFLILSVNNSKQT 80
Cdd:CHL00002   1 MEEFQGYLELDRSRQQDFLYPLLFQEYIYALAHDHGLNRSILLENSGYDNKYSLLIVKRLITRMYQQNHLIISVNDSNQN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583  81 PFLGHNKNFYLQVMSEVSSIIMEIPLSLRLRPSLERKGVVKSDNLRSIHSIFSFLEDNFSHLNYVLDILIPYPAHLEILV 160
Cdd:CHL00002  81 PFLGHNKNFYSQMISEGFAVIVEIPFSLRLVSSLEEKEIAKSQNLRSIHSIFPFLEDKFSHLNYVSDILIPYPIHLEILV 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583 161 QALRYWIKDPSSLHLLRFFLHECHNWDSLIPSNSKKGSSSFskRNHRLFFFLYTSHVCEYESGFLFLRNQSSHLRSTSSG 240
Cdd:CHL00002 161 QTLRYWIKDASSLHLLRFFLHEYCNWNSLITSKKSISFFSK--ENQRLFLFLYNSYVCEYESIFVFLRKQSSHLRSTSSG 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583 241 ALIERIYFYGKIEHLAEVFARAFQANLWLFKDPFMHYVRYQGKSILASKGTFLLMNKWKYYFVNFWKSYFYLWSQPGKIY 320
Cdd:CHL00002 239 VFLERIHFYGKIEHLVEVFRNDFQKTLWLFKDPFIHYVRYQGKSILASKGTPLLMNKWKYYLVNFWQCHFHLWSQPGRIH 318
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583 321 INinQLSNHSFDFLGYRSSVRLKSSMVRSQMLENAFLIENAIKKLETIVPIMPLIGSLAKSKFCNASGHPIGKVIWADLS 400
Cdd:CHL00002 319 IN--QLSNHSFDFLGYLSSVRLNPSVVRSQMLENSFLIDNAIKKFDTIVPIIPLIGSLAKAKFCNVLGHPISKPVWTDLS 396
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583 401 DSDIIDAFGRIYRNFSHYRSGSSKKKSLYRVKYILRLSCARTLARKHKSTVRAFLKRFGSELLEEFFTEEEQVFSLTFPR 480
Cdd:CHL00002 397 DSDIIDRFGRICRNLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVLSLIFPR 476
                        490       500
                 ....*....|....*....|....*...
gi 109657583 481 VSSISRKLSRRRIWYLDIICINDLANNE 508
Cdd:CHL00002 477 TSSTSRRLYRERIWYLDIICINDLVNHE 504
MatK_N pfam01824
MatK/TrnK amino terminal region; The function of this region is unknown.
1-335 6.47e-169

MatK/TrnK amino terminal region; The function of this region is unknown.


Pssm-ID: 280070  Cd Length: 331  Bit Score: 480.03  E-value: 6.47e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583    1 MEKFQSYLGLDRSQQHYFLYPLIFQEYIYVLAHDHGLNRSILLENAGYDNKSSLLIVKRLINRMYQQNFLILSVNNSKQT 80
Cdd:pfam01824   1 MEEFQRYLELDRSRQQRFLYPLLFQEYIYALAHDHNLNRSILLENVGYNNKFSLLIVKRLITRMYQQNHLIISTNDSNQN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583   81 PFLGHNKNFYLQVMSEVSSIIMEIPLSLRLRPSLERKGVVKSDNLRSIHSIFSFLEDNFSHLNYVLDILIPYPAHLEILV 160
Cdd:pfam01824  81 PFLGYNKNFYSQMISEGFAVIVEIPFSLRLVSSLEKKEIVKSHNLRSIHSIFPFLEDKFLHLNYVLDILIPYPIHLEILV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583  161 QALRYWIKDPSSLHLLRFFLHECHNWDSLIpsNSKKGSSSFSKRNHRLFFFLYTSHVCEYESGFLFLRNQSSHLRSTSSG 240
Cdd:pfam01824 161 QILRYWIKDASSLHLLRFFLHEYSNWNSFI--TSKKSISFFSKENPRLFLFLYNSYVYEYESFFVFLRKQSSHLRSTSYG 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583  241 ALIERIYFYGKIEHLAEVFARAFQANLWLFKDPFMHYVRYQGKSILASKGTFLLMNKWKYYFVNFWKSYFYLWSQPGKiy 320
Cdd:pfam01824 239 VFLERIYFYGKIEHFVEVFANDFQIILWLFKDPFMHYVRYQGKSILASKGTPLLMNKWKYYLVNFWQCHFYVWFQPGR-- 316
                         330
                  ....*....|....*
gi 109657583  321 ININQLSNHSFDFLG 335
Cdd:pfam01824 317 IHINQLSKHSFDFLG 331
Intron_maturas2 pfam01348
Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase ...
363-459 1.27e-28

Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase and DNA endonuclease activities for site-specific insertion into DNA. Although this type of intron is self splicing in vitro they require a maturase protein for splicing in vivo. It has been shown that a specific region of the aI2 intron is needed for the maturase function. This region was found to be conserved in group II introns and called domain X.


Pssm-ID: 279664 [Multi-domain]  Cd Length: 140  Bit Score: 110.25  E-value: 1.27e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109657583  363 KKLETIVPIMPLIGSLAKSKFCNAS---GHPIGKVIWADLSDSDIIDAFGRIYRNFSHYRSGSSKKKSLY-RVKYILRLS 438
Cdd:pfam01348   2 TRLVLNAPIRDIINKLAKAGFCKHYtekGKPRSVGRWTDLDDRDILLRYNAIIRGILNYYSFADNKKRLYtRIYYILRLS 81
                          90       100
                  ....*....|....*....|..
gi 109657583  439 CARTLARKHKS-TVRAFLKRFG 459
Cdd:pfam01348  82 CAKTLARKLKLgTVRKVIKKFG 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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