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Conserved domains on  [gi|94404555|gb|ABF17940|]
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putative chloroplast chlorophyll a/b-binding protein [Carya cathayensis]

Protein Classification

chlorophyll a-b binding protein( domain architecture ID 10010583)

chlorophyll a-b binding protein is a component of the light-harvesting complex (LHC) that functions as a light receptor; it captures and delivers excitation energy to photosystems with which it is closely associated

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 5-267 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


:

Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 560.13  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555    5 TMALSSPSLAGQAIKLAP-SSSDLLGEGRVTMRKTAGRPKPvsSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 83
Cdd:PLN00025   1 AMALSSTAFAGQAALKPPnELSRKVGNGRVTMRKTVAKAAG--SGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDT 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   84 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIW 163
Cdd:PLN00025  79 AGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIW 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555  164 ATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 243
Cdd:PLN00025 159 ACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 238

                        250       260
                 ....*....|....*....|....
gi 94404555  244 LADHLADPVNNNAWAYATNFVPGK 267
Cdd:PLN00025 239 LADHLADPVANNAWAYATNFVPGK 262
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 5-267 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 560.13  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555    5 TMALSSPSLAGQAIKLAP-SSSDLLGEGRVTMRKTAGRPKPvsSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 83
Cdd:PLN00025   1 AMALSSTAFAGQAALKPPnELSRKVGNGRVTMRKTVAKAAG--SGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDT 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   84 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIW 163
Cdd:PLN00025  79 AGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIW 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555  164 ATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 243
Cdd:PLN00025 159 ACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 238

                        250       260
                 ....*....|....*....|....
gi 94404555  244 LADHLADPVNNNAWAYATNFVPGK 267
Cdd:PLN00025 239 LADHLADPVANNAWAYATNFVPGK 262
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
67-234 4.62e-63

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 195.22  E-value: 4.62e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555    67 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKfGEAVWFKAGAQIFseggld 146
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG-NEPVWFEAGAVAL------ 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   147 ylgnpslvHAQSILAI-WATQVILMGAVEGYRIAGG---PLGEVTDPIYPGG-SFDPLGLA-DDPEAFAELKVKELKNGR 220
Cdd:pfam00504  74 --------HAQSVPTLlALQILLLMGFLELARWQGGkapGLGGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGR 145

                         170
                  ....*....|....
gi 94404555   221 LAMFSMFGFFVQAI 234
Cdd:pfam00504 146 LAMIAFLGFFVQEL 159
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 5-267 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 560.13  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555    5 TMALSSPSLAGQAIKLAP-SSSDLLGEGRVTMRKTAGRPKPvsSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 83
Cdd:PLN00025   1 AMALSSTAFAGQAALKPPnELSRKVGNGRVTMRKTVAKAAG--SGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDT 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   84 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIW 163
Cdd:PLN00025  79 AGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIW 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555  164 ATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 243
Cdd:PLN00025 159 ACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 238

                        250       260
                 ....*....|....*....|....
gi 94404555  244 LADHLADPVNNNAWAYATNFVPGK 267
Cdd:PLN00025 239 LADHLADPVANNAWAYATNFVPGK 262
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 49-260 1.16e-74

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 230.46  E-value: 1.16e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   49 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNG-VKF 127
Cdd:PLN00171 101 SFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGaVHF 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555  128 GEAVWFKAGAQIFSEGGLDYLGNPSL--VHAQSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDP 198
Cdd:PLN00171 181 AEPVWWRVGYAKLQGDTLDYLGIPGLhiAGSQGVIVIAICQALLMVGPEYARYCGiealEPLGIYLpgDINYPGGAlFDP 260

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 94404555  199 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYA 260
Cdd:PLN00171 261 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
67-234 4.62e-63

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 195.22  E-value: 4.62e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555    67 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKfGEAVWFKAGAQIFseggld 146
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG-NEPVWFEAGAVAL------ 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   147 ylgnpslvHAQSILAI-WATQVILMGAVEGYRIAGG---PLGEVTDPIYPGG-SFDPLGLA-DDPEAFAELKVKELKNGR 220
Cdd:pfam00504  74 --------HAQSVPTLlALQILLLMGFLELARWQGGkapGLGGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGR 145

                         170
                  ....*....|....
gi 94404555   221 LAMFSMFGFFVQAI 234
Cdd:pfam00504 146 LAMIAFLGFFVQEL 159
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 8-255 1.03e-48

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 161.94  E-value: 1.03e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555    8 LSSPSLAGQAIKLAPSSSDLLGEGRVTMRKTAGRPKPVssgspwyGPDRVKYLGpfSGEPPSYLTGEFPGDYGWDTAGLS 87
Cdd:PLN00048   1 TSGVQTARRALSSSAARSSSAKKARFVVRAEATPPAKQ-------GADRQLWFA--SKQSLSYLDGTLPGDFGFDPLGLS 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   88 aDPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAqIFSEGGLDYLGNPslvhaqsi 159
Cdd:PLN00048  72 -DPEGaggFIEPQWLaygEVINGRFAMLGAAGAIAPEILGKAGLIPQETalPWFQSGV-IPPAGTYDYWADP-------- 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555  160 LAIWATQVILMGAVEGYRIAG----GPLGEVT------------DPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLA 222
Cdd:PLN00048 142 YTLFVLEMALMGFAEHRRAQDyykpGSMGKQYflglekglggsgNPAYPGGPfFNPLGFGKDEKSMKELKLKEVKNGRLA 221

                        250       260       270
                 ....*....|....*....|....*....|...
gi 94404555  223 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
Cdd:PLN00048 222 MLAILGYFIQALVTGVGPFQNLLDHLADPVNNN 254
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 66-255 5.62e-45

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 151.95  E-value: 5.62e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   66 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKfGEAVWFKAGAQIFseggl 145
Cdd:PLN00147  53 DPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR-NLPVWYEAGAVKF----- 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555  146 DYlgnpslvhaQSILAIWATQVILMGAVEGYRI-----------AGGPLG-----EVTDPIYPGGS-FDPLGLADDPEAF 208
Cdd:PLN00147 127 EF---------ASTRTLFVVQLLLMGFAETKRYmdfvspgsqakEGSFFGleaalEGLEPGYPGGPlFNPLGLAKDIENA 197

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 94404555  209 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
Cdd:PLN00147 198 HDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKT 244
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 65-255 1.64e-43

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 147.87  E-value: 1.64e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   65 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLarngvkfGEAVWFKAGAQIFSEG 143
Cdd:PLN00099  50 GQPrPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVKAQEWAAIPG 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555  144 G-LDYLGNPslVHAQSILAIWATQVILMGAVEGYRiaggplGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNG 219
Cdd:PLN00099 123 GqATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR------SMEKDPekkKYPGGAFDPLGYSKDPKKFEEYKVKEIKNG 194

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 94404555  220 RLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 255
Cdd:PLN00099 195 RLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNN 231
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 67-255 6.55e-40

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 138.60  E-value: 6.55e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   67 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKfGEAVWFKAGA-QIFseggl 145
Cdd:PLN00097  53 AAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA-DLPNWIDAAKwDGY----- 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555  146 dYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRIAGGPLGEV-TDPIYPGGSFDPLGLADDPEAFAELKVKELKNG 219
Cdd:PLN00097 127 -WAGAGPLFFIQMAMFNWAeirrwQDMKAPGSMNEDPLFGANKGDTnTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANG 205

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 94404555  220 RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
Cdd:PLN00097 206 RLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNG 241
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 4-252 2.35e-39

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 138.38  E-value: 2.35e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555    4 STMALSSPSLAGQAIKLAPSSSdllgeGRVTMR----KTAGRPKPVSSGSPWYGPDRVKYlgpFSG-EPPSYLTGEFPGD 78
Cdd:PLN00187   1 TAAAAAASSFMGTRVPDVASNS-----GRIVARfgfgKKKKAAKKAKKKSSKVGADRPLW---FPGaKAPEWLDGSLVGD 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   79 YGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCV 115
Cdd:PLN00187  73 YGFDPFGLGKPAEylqfdldsldqNLAKNlagdvigtrteaseikstpfqpysevfglqrfRECELIHGRWAMLATLGAL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555  116 FPELLArnGVkfgeaVWFKAGAQIFSEGGlDYLGNPsLVHAQSILaIWaTQVILMGAVEGYRIAggplgEVtDP---IYP 192
Cdd:PLN00187 153 SVEALT--GV-----TWQDAGKVELVDGS-SYLGQP-LPFSITTL-IW-IEVLVIGYIEFQRNA-----EL-DPekrLYP 215

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 94404555  193 GGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 252
Cdd:PLN00187 216 GGKfFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 276
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 1-262 1.46e-37

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 133.11  E-value: 1.46e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555    1 MAASTMALSSPSLAGqaiKLAPSSSDLLGEGRVTMRKTAGrpkPVSSGSPWYGPDRVKYlgpFSGE-PPSYLTGEFPGDY 79
Cdd:PLN00098  13 LTLSTRRVPQKALRR---PIVASQSGTGGRMKVRLNATKG---GVSSVCEPLPPDRPLW---FPGSsPPEWLDGSLPGDF 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   80 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGvkFGEAV-WFKAGAQifsegglDYLGNPSlvhaqs 158
Cdd:PLN00098  84 GFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG--FIENFsWYDAGAR-------EYFADPT------ 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555  159 ilAIWATQVILMGAVEGYRIAG--------------GPLGEVTDPIYPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLA 222
Cdd:PLN00098 149 --TLFVVQMVLMGWAEGRRWADlikpgcvdiepklpNKTNPKPDVGYPGGLwFDPMMWGrGSPEPVMVLRTKEIKNGRLA 226

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 94404555  223 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 262
Cdd:PLN00098 227 MLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 31-255 3.10e-35

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 126.53  E-value: 3.10e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   31 GRVTMRKTAGRPKpVSSGSPWYGpdrvkylgpfSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 110
Cdd:PLN00100  19 GVSTTRRPRVRVA-ARARPMWYP----------GATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAA 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555  111 ALGCVFPELLarngvkfGEAVWFKAGAQIFsegGLDylgNPSLVhaqsilaiwATQVILMGAVEGYRIAG----GPLGEV 186
Cdd:PLN00100  88 TAGILFTDAV-------GLPKFWEAGAEKY---GLD---LQTLV---------LIQVVVMAVLEAARYRGfmktGESGVL 145

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94404555  187 TDpiYPggsFDPLGLaDDPEafaeLKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
Cdd:PLN00100 146 SF--FP---FDPTGM-DSPE----MKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVN 204
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 1-254 4.13e-32

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 118.48  E-value: 4.13e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555    1 MAASTMALSSPSLAGQAIK---LAPSSSDLLGEGRVtmrktagrpKPVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFP 76
Cdd:PLN00101   1 MATVTTQASAAVFRPCSSKsrfLSGSSSKLNRELSF---------KPMPSSATRSFKVEAKKGEWLPGLAsPGYLNGSLP 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   77 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVkFGEAVWFKAG-AQIFSEGGLDYLGNPSLVH 155
Cdd:PLN00101  72 GDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INAPQWYDAGkAEYFASSSTLFVIEFILFH 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555  156 AQSILAiWaTQVILMGAVEGYRIAGG---PLGEVTdpiYPGGSFDPLGLADDPEAfaelKVKELKNGRLAMFSMFGFFVQ 232
Cdd:PLN00101 151 YVEIRR-W-QDIKNPGSVNQDPIFKQyslPPNEVG---YPGGIFNPLNFAPTEEA----KEKELANGRLAMLAFLGFVVQ 221

                        250       260
                 ....*....|....*....|..
gi 94404555  233 AIVTGKGPLENLADHLADPVNN 254
Cdd:PLN00101 222 HNVTGKGPFENLLQHLSDPWHN 243
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 2-244 3.23e-19

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 84.21  E-value: 3.23e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555    2 AASTMALSSPSLAGQAIKLAPSSSdlLGEGRVTMRKTAGRPKPVSSGSPWYgpDRVKYLGPFSGepPSYLTGEFPGDYGW 81
Cdd:PLN00170   7 GAVLNGLGSSFLTGGKRSLALLVG--TGAAKVGARTLLVVAAAAQPKKSWI--PAVKGGGNLVD--PEWLDGSLPGDYGF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   82 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEllARNGVKfgeavWFKAGAQifseggldylgnPSLVHAQSILA 161
Cdd:PLN00170  81 DPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGAD------------PGAIAPFSFGS 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555  162 IWATQVILMGAVEGYR--------------------IAGGPLGEVTDPIYPGGS-FDPLGLAD---------DPEAFAEL 211
Cdd:PLN00170 142 LLGTQLLLMGWVESKRwvdffnpdsqsvewatpwsrTAENFANATGLQGYPGGKfFDPLGLAGtvkdgvyipDFEKLERL 221

                        250       260       270
                 ....*....|....*....|....*....|...
gi 94404555  212 KVKELKNGRLAMFSMFGFFVQAiVTGKGPLENL 244
Cdd:PLN00170 222 KLAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 253
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
196-239 6.49e-07

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 48.07  E-value: 6.49e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 94404555   196 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 239
Cdd:pfam00504  15 FDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLG 58
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 61-239 5.81e-06

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 46.21  E-value: 5.81e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555   61 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK-NRELEVIHSRWAMLGALGCVFPELLARNGvkfgEAVWFKAGAQI 139
Cdd:PLN00089  39 GAIGFAAKEFMFIGKTGSKKFDPLGLAEKVEEFLPwFRESELKHGRAAMLAVAGFIAPDFVRIPG----EAYSFAAIPKT 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94404555  140 FSeggldylGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTdpiyPGG-SFDPLGLA-DDPEAFAELKVKELK 217
Cdd:PLN00089 115 ID-------AHDALLKSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRT----PGDfGFDLLALYpKDAAKMEKKKDKELK 183

                        170       180
                 ....*....|....*....|..
gi 94404555  218 NGRLAMFSMFGFFVQAIVTGKG 239
Cdd:PLN00089 184 NGRLAMVAIGGIATGSAITGHG 205
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 192-233 4.78e-05

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 43.19  E-value: 4.78e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 94404555  192 PGGSFDPLGLAD--DPEAFAELKVKELKNGRLAMFSMFGFFVQA 233
Cdd:PLN00120  43 PLGFFDPLGLVDdgDQEKFDRLRYVEIKHGRISMLAVVGYLVTE 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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