NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|93004747|gb|ABE97146|]
View 

mitochondrial alanine-glyoxylate transaminase, partial [Solanum chilense]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ArgD super family cl43043
Acetylornithine aminotransferase/4-aminobutyrate aminotransferase [Amino acid transport and ...
 1-45 3.54e-15

Acetylornithine aminotransferase/4-aminobutyrate aminotransferase [Amino acid transport and metabolism]; Acetylornithine aminotransferase/4-aminobutyrate aminotransferase is part of the Pathway/BioSystem: Arginine biosynthesis


The actual alignment was detected with superfamily member COG0160:

Pssm-ID: 439930 [Multi-domain]  Cd Length: 429  Bit Score: 66.24  E-value: 3.54e-15
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 93004747   1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVLK 45
Cdd:COG0160 275 SLGGGLPLSAVVGRAEIMDAWGPGEHGGTFGGNPLACAAALAVLD 319
 
Name Accession Description Interval E-value
ArgD COG0160
Acetylornithine aminotransferase/4-aminobutyrate aminotransferase [Amino acid transport and ...
 1-45 3.54e-15

Acetylornithine aminotransferase/4-aminobutyrate aminotransferase [Amino acid transport and metabolism]; Acetylornithine aminotransferase/4-aminobutyrate aminotransferase is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 439930 [Multi-domain]  Cd Length: 429  Bit Score: 66.24  E-value: 3.54e-15
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 93004747   1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVLK 45
Cdd:COG0160 275 SLGGGLPLSAVVGRAEIMDAWGPGEHGGTFGGNPLACAAALAVLD 319
PRK06148 PRK06148
hypothetical protein; Provisional
 2-44 2.22e-14

hypothetical protein; Provisional


Pssm-ID: 180426 [Multi-domain]  Cd Length: 1013  Bit Score: 64.28  E-value: 2.22e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 93004747     2 IGNGLPLGAVVTTPEIASVMAQKIQ-FNTYGGNPVCSAGGHAVL 44
Cdd:PRK06148  856 IGNGHPMGAVVTTREIADSFDNGMEyFNTFGGNPVSCAIGLAVL 899
OAT_like cd00610
Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP) ...
 1-45 5.56e-13

Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.


Pssm-ID: 99735 [Multi-domain]  Cd Length: 413  Bit Score: 60.27  E-value: 5.56e-13
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 93004747   1 GIGNGLPLGAVVTTPEIASVMAQK--IQFNTYGGNPVCSAGGHAVLK 45
Cdd:cd00610 261 GLGGGLPLGAVLGREEIMDAFPAGpgLHGGTFGGNPLACAAALAVLE 307
Aminotran_3 pfam00202
Aminotransferase class-III;
1-45 2.13e-07

Aminotransferase class-III;


Pssm-ID: 395148 [Multi-domain]  Cd Length: 397  Bit Score: 44.24  E-value: 2.13e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 93004747     1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVLK 45
Cdd:pfam00202 255 ALTGGFPLAATLGRAEVMQAFAPGSHGGTFGGNPLACAAALATLE 299
 
Name Accession Description Interval E-value
ArgD COG0160
Acetylornithine aminotransferase/4-aminobutyrate aminotransferase [Amino acid transport and ...
 1-45 3.54e-15

Acetylornithine aminotransferase/4-aminobutyrate aminotransferase [Amino acid transport and metabolism]; Acetylornithine aminotransferase/4-aminobutyrate aminotransferase is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 439930 [Multi-domain]  Cd Length: 429  Bit Score: 66.24  E-value: 3.54e-15
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 93004747   1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVLK 45
Cdd:COG0160 275 SLGGGLPLSAVVGRAEIMDAWGPGEHGGTFGGNPLACAAALAVLD 319
PRK06148 PRK06148
hypothetical protein; Provisional
 2-44 2.22e-14

hypothetical protein; Provisional


Pssm-ID: 180426 [Multi-domain]  Cd Length: 1013  Bit Score: 64.28  E-value: 2.22e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 93004747     2 IGNGLPLGAVVTTPEIASVMAQKIQ-FNTYGGNPVCSAGGHAVL 44
Cdd:PRK06148  856 IGNGHPMGAVVTTREIADSFDNGMEyFNTFGGNPVSCAIGLAVL 899
OAT_like cd00610
Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP) ...
 1-45 5.56e-13

Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.


Pssm-ID: 99735 [Multi-domain]  Cd Length: 413  Bit Score: 60.27  E-value: 5.56e-13
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 93004747   1 GIGNGLPLGAVVTTPEIASVMAQK--IQFNTYGGNPVCSAGGHAVLK 45
Cdd:cd00610 261 GLGGGLPLGAVLGREEIMDAFPAGpgLHGGTFGGNPLACAAALAVLE 307
ArgD COG4992
Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase [Amino acid transport and ...
 1-45 2.79e-11

Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase [Amino acid transport and metabolism]; Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 444016 [Multi-domain]  Cd Length: 396  Bit Score: 55.44  E-value: 2.79e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 93004747   1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVLK 45
Cdd:COG4992 251 GLGGGFPIGAVLAREEVADVFTPGDHGSTFGGNPLACAAALAVLD 295
PRK02627 PRK02627
acetylornithine aminotransferase; Provisional
 1-45 2.12e-09

acetylornithine aminotransferase; Provisional


Pssm-ID: 235056 [Multi-domain]  Cd Length: 396  Bit Score: 50.13  E-value: 2.12e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 93004747    1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVLK 45
Cdd:PRK02627 252 GLGGGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIE 296
argD PRK05093
acetylornithine/succinyldiaminopimelate transaminase;
1-44 2.37e-09

acetylornithine/succinyldiaminopimelate transaminase;


Pssm-ID: 179933 [Multi-domain]  Cd Length: 403  Bit Score: 49.92  E-value: 2.37e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 93004747    1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVL 44
Cdd:PRK05093 254 ALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVF 297
argD PRK01278
acetylornithine transaminase protein; Provisional
 1-44 2.66e-09

acetylornithine transaminase protein; Provisional


Pssm-ID: 179270 [Multi-domain]  Cd Length: 389  Bit Score: 49.84  E-value: 2.66e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 93004747    1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVL 44
Cdd:PRK01278 245 GIGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVL 288
PRK06149 PRK06149
aminotransferase;
1-44 8.63e-09

aminotransferase;


Pssm-ID: 235716 [Multi-domain]  Cd Length: 972  Bit Score: 48.45  E-value: 8.63e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 93004747    1 GIGNGLPLGAVVTTPEIA-SVMAQKIQFNTYGGNPVCSAGGHAVL 44
Cdd:PRK06149 815 GMGNGHPLGAVITRREIAeALEAEGYFFSSTGGSPVSCRIGMAVL 859
PRK05769 PRK05769
acetyl ornithine aminotransferase family protein;
1-45 4.00e-08

acetyl ornithine aminotransferase family protein;


Pssm-ID: 235599 [Multi-domain]  Cd Length: 441  Bit Score: 46.45  E-value: 4.00e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 93004747    1 GIGNGLPLGAVVTTPEIASvMAQKIQFNTYGGNPVCSAGGHAVLK 45
Cdd:PRK05769 291 AIAGGLPLGAVIGRAELMF-LPPGSHANTFGGNPVAAAAALATLE 334
argD PRK03244
acetylornithine transaminase;
1-45 6.19e-08

acetylornithine transaminase;


Pssm-ID: 235112 [Multi-domain]  Cd Length: 398  Bit Score: 45.67  E-value: 6.19e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 93004747    1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVLK 45
Cdd:PRK03244 253 GLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLD 297
argD PRK03715
acetylornithine transaminase protein; Provisional
 1-45 1.01e-07

acetylornithine transaminase protein; Provisional


Pssm-ID: 179636 [Multi-domain]  Cd Length: 395  Bit Score: 45.45  E-value: 1.01e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 93004747    1 GIGNGLPLGAVVTTPEIASVMAQKiQFNTYGGNPVCSAGGHAVLK 45
Cdd:PRK03715 249 GIGGGVPLAALLAKAEVAVFEAGD-QGGTYNGNPLMTAVGVAVIS 292
PRK12381 PRK12381
bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
 1-44 1.67e-07

bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional


Pssm-ID: 183486 [Multi-domain]  Cd Length: 406  Bit Score: 44.71  E-value: 1.67e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 93004747    1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVL 44
Cdd:PRK12381 253 ALGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVL 296
Aminotran_3 pfam00202
Aminotransferase class-III;
1-45 2.13e-07

Aminotransferase class-III;


Pssm-ID: 395148 [Multi-domain]  Cd Length: 397  Bit Score: 44.24  E-value: 2.13e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 93004747     1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVLK 45
Cdd:pfam00202 255 ALTGGFPLAATLGRAEVMQAFAPGSHGGTFGGNPLACAAALATLE 299
BioA COG0161
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme transport and metabolism]; ...
 1-45 2.26e-07

Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme transport and metabolism]; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 439931 [Multi-domain]  Cd Length: 446  Bit Score: 44.27  E-value: 2.26e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 93004747   1 GIGNG-LPLGAVVTTPEIASVMAQ---KIQFN---TYGGNPVCSAGGHAVLK 45
Cdd:COG0161 283 GLTGGyLPLGATLVSDEIYDAFLDgdeAGAFMhghTYSGHPLACAAALANLD 334
PRK08117 PRK08117
aspartate aminotransferase family protein;
1-45 6.35e-07

aspartate aminotransferase family protein;


Pssm-ID: 181234 [Multi-domain]  Cd Length: 433  Bit Score: 43.10  E-value: 6.35e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 93004747    1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVLK 45
Cdd:PRK08117 277 GIASGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLE 321
PRK07495 PRK07495
4-aminobutyrate--2-oxoglutarate transaminase;
1-44 2.41e-05

4-aminobutyrate--2-oxoglutarate transaminase;


Pssm-ID: 236032 [Multi-domain]  Cd Length: 425  Bit Score: 38.57  E-value: 2.41e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 93004747    1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVL 44
Cdd:PRK07495 268 GLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVL 311
argD PRK02936
acetylornithine transaminase;
1-45 5.54e-05

acetylornithine transaminase;


Pssm-ID: 179505 [Multi-domain]  Cd Length: 377  Bit Score: 37.64  E-value: 5.54e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 93004747    1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVLK 45
Cdd:PRK02936 237 GLGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQ 281
PLN00144 PLN00144
acetylornithine transaminase
 4-38 9.39e-05

acetylornithine transaminase


Pssm-ID: 177748 [Multi-domain]  Cd Length: 382  Bit Score: 36.99  E-value: 9.39e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 93004747    4 NGLPLGAVVTTPEIASVMAQKIQFNTYGGNP-VCSA 38
Cdd:PLN00144 240 GGLPIGAVLVTEKVASAINPGDHGSTFAGGPlVCNA 275
argD PRK04612
acetylornithine transaminase;
1-45 1.22e-04

acetylornithine transaminase;


Pssm-ID: 179868 [Multi-domain]  Cd Length: 408  Bit Score: 36.46  E-value: 1.22e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 93004747    1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVLK 45
Cdd:PRK04612 257 ALGGGFPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALR 301
PRK08593 PRK08593
aspartate aminotransferase family protein;
2-45 4.25e-04

aspartate aminotransferase family protein;


Pssm-ID: 181493 [Multi-domain]  Cd Length: 445  Bit Score: 35.06  E-value: 4.25e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 93004747    2 IGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVLK 45
Cdd:PRK08593 278 LAGGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATID 321
PRK09792 PRK09792
4-aminobutyrate transaminase; Provisional
 2-44 6.61e-04

4-aminobutyrate transaminase; Provisional


Pssm-ID: 182078 [Multi-domain]  Cd Length: 421  Bit Score: 34.62  E-value: 6.61e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 93004747    2 IGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVL 44
Cdd:PRK09792 269 LAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVL 311
PRK06058 PRK06058
4-aminobutyrate--2-oxoglutarate transaminase;
1-45 1.40e-03

4-aminobutyrate--2-oxoglutarate transaminase;


Pssm-ID: 235685 [Multi-domain]  Cd Length: 443  Bit Score: 33.46  E-value: 1.40e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 93004747    1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVLK 45
Cdd:PRK06058 289 GIAGGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIE 333
PRK07481 PRK07481
hypothetical protein; Provisional
 1-45 2.29e-03

hypothetical protein; Provisional


Pssm-ID: 168967 [Multi-domain]  Cd Length: 449  Bit Score: 33.11  E-value: 2.29e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 93004747    1 GIGNG-LPLGAVVTTPEIASVMAQKIQF-------NTYGGNPVCSAGGHAVLK 45
Cdd:PRK07481 283 GITSGyVPLGATMVNARIADAFEANADFggaimhgYTYSGHPVACAAALATLD 335
PRK06777 PRK06777
4-aminobutyrate--2-oxoglutarate transaminase;
2-44 2.54e-03

4-aminobutyrate--2-oxoglutarate transaminase;


Pssm-ID: 180690 [Multi-domain]  Cd Length: 421  Bit Score: 32.86  E-value: 2.54e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 93004747    2 IGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVL 44
Cdd:PRK06777 269 LGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVL 311
PRK04260 PRK04260
acetylornithine transaminase;
1-44 9.39e-03

acetylornithine transaminase;


Pssm-ID: 179803 [Multi-domain]  Cd Length: 375  Bit Score: 31.34  E-value: 9.39e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 93004747    1 GIGNGLPLGAVVTTPEIASVMAQKIQFNTYGGNPVCSAGGHAVL 44
Cdd:PRK04260 235 GLANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATL 278
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH