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Conserved domains on  [gi|86558569|gb|ABD03526|]
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hypothetical protein CYB_2595 [Synechococcus sp. JA-2-3B'a(2-13)]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11448200)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes; similar to Schizosaccharomyces pombe mitochondrial pentatricopeptide repeat-containing protein 4

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|10517866
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 360-487 9.30e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.29  E-value: 9.30e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86558569 360 AEEETLWRTWLTVYPNHPGADDALFWLTRTLEWQGKREEALvllanwladpfgdgdmryvlrrrllllldsgatpSELQA 439
Cdd:COG1729  10 DEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAA----------------------------------EAFEK 55

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 86558569 440 FLDRHGEHPLAAAVRYALAVRFAREHRYDLALQltenlALDAVLDRYP 487
Cdd:COG1729  56 LLKRYPDSPKAPDALLKLGLSYLELGDYDKARA-----TLEELIKKYP 98
 
Name Accession Description Interval E-value
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 360-487 9.30e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.29  E-value: 9.30e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86558569 360 AEEETLWRTWLTVYPNHPGADDALFWLTRTLEWQGKREEALvllanwladpfgdgdmryvlrrrllllldsgatpSELQA 439
Cdd:COG1729  10 DEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAA----------------------------------EAFEK 55

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 86558569 440 FLDRHGEHPLAAAVRYALAVRFAREHRYDLALQltenlALDAVLDRYP 487
Cdd:COG1729  56 LLKRYPDSPKAPDALLKLGLSYLELGDYDKARA-----TLEELIKKYP 98
 
Name Accession Description Interval E-value
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 360-487 9.30e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.29  E-value: 9.30e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86558569 360 AEEETLWRTWLTVYPNHPGADDALFWLTRTLEWQGKREEALvllanwladpfgdgdmryvlrrrllllldsgatpSELQA 439
Cdd:COG1729  10 DEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAA----------------------------------EAFEK 55

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 86558569 440 FLDRHGEHPLAAAVRYALAVRFAREHRYDLALQltenlALDAVLDRYP 487
Cdd:COG1729  56 LLKRYPDSPKAPDALLKLGLSYLELGDYDKARA-----TLEELIKKYP 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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