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Conserved domains on  [gi|67036678|gb|AAY63246|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Rhynchostegium conostomum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 3-78 3.42e-30

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member PRK06590:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 624  Bit Score: 110.63  E-value: 3.42e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 67036678    3 TVDFSTIFARASAFSEphhyfifcnMRFHAITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:PRK06590 195 SLNYDEVFAAAPQFFG---------LGWSALTLICLLLFIGAMGKSAQFPLHTWLPDAMEGPTPVSALIHAATMVT 261
 
Name Accession Description Interval E-value
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 3-78 3.42e-30

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 110.63  E-value: 3.42e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 67036678    3 TVDFSTIFARASAFSEphhyfifcnMRFHAITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:PRK06590 195 SLNYDEVFAAAPQFFG---------LGWSALTLICLLLFIGAMGKSAQFPLHTWLPDAMEGPTPVSALIHAATMVT 261
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 3-78 7.64e-27

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 101.38  E-value: 7.64e-27
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 67036678   3 TVDFSTIFARASAFSEPHHYfifcnmrfhaiTVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:COG1009 191 TLNFSELLAAAPTILSSPLL-----------TLILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVK 255
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 3-78 4.10e-24

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 93.50  E-value: 4.10e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 67036678     3 TVDFSTIFARASAFSephhyfifcnmrFHAITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:TIGR01974 194 TLNFQEVFALAPGAF------------FSALTLICLLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVT 257
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 33-78 9.22e-08

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 46.92  E-value: 9.22e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 67036678    33 ITVICILLFIGAVGKSAQIGLHTRLPDA-MEGPTPVSAsIHAATMVT 78
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSA-LLAATLVK 126
 
Name Accession Description Interval E-value
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 3-78 3.42e-30

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 110.63  E-value: 3.42e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 67036678    3 TVDFSTIFARASAFSEphhyfifcnMRFHAITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:PRK06590 195 SLNYDEVFAAAPQFFG---------LGWSALTLICLLLFIGAMGKSAQFPLHTWLPDAMEGPTPVSALIHAATMVT 261
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 3-78 2.18e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 102.78  E-value: 2.18e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 67036678    3 TVDFSTIFARASAFSEPHHyfifcnmrfhaITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:MTH00210 191 TLEFSTISSLLVTNINKES-----------LTIICLLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVT 255
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 3-78 7.64e-27

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 101.38  E-value: 7.64e-27
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 67036678   3 TVDFSTIFARASAFSEPHHYfifcnmrfhaiTVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:COG1009 191 TLNFSELLAAAPTILSSPLL-----------TLILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVK 255
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 3-78 1.22e-25

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 97.84  E-value: 1.22e-25
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 67036678    3 TVDFSTIFARASAFSephhyfifcnmrFHAITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:MTH00020 191 SLDFSSVFNMVVSAP------------SSDITLICLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVT 254
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 3-78 4.10e-24

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 93.50  E-value: 4.10e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 67036678     3 TVDFSTIFARASAFSephhyfifcnmrFHAITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:TIGR01974 194 TLNFQEVFALAPGAF------------FSALTLICLLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVT 257
ndhF CHL00025
NADH dehydrogenase subunit 5
 34-77 2.25e-21

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 85.71  E-value: 2.25e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 67036678   34 TVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:CHL00025 227 TLCAFLLFLGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMV 270
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
32-77 1.46e-18

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 77.76  E-value: 1.46e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 67036678   32 AITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:PRK07376 225 LALLLCILVFLGPMAKSAQFPLHVWLPDAMEGPTPISALIHAATMV 270
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 35-78 1.11e-17

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 75.38  E-value: 1.11e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 67036678   35 VICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:MTH00032 226 IIGILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVT 269
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 23-77 1.69e-14

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 66.15  E-value: 1.69e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 67036678   23 FIFCNMRFHAITVICIL-LFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:MTH00208 224 ILSLNNSNSFLINILLFgILLAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMV 279
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 23-78 1.70e-14

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 66.13  E-value: 1.70e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 67036678   23 FIFCNMRFHAITVICILLfiGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:MTH00211 195 QLFILNLDLTLFLLGLLL--AAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVV 248
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 40-77 1.83e-14

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 66.03  E-value: 1.83e-14
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 67036678   40 LFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:MTH00108 216 LLLAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMV 253
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 40-77 2.21e-14

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 66.01  E-value: 2.21e-14
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 67036678   40 LFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:MTH00137 221 LILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMV 258
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 40-77 6.63e-14

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 64.41  E-value: 6.63e-14
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 67036678   40 LFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:MTH00004 215 LILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMV 252
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 31-77 2.49e-13

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 62.68  E-value: 2.49e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 67036678   31 HAITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:PRK06525 204 SLKYLVFLGILFAAWGKSAQLPFYSWLPDAMEAPTPASAYLHAASMV 250
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 3-77 7.54e-13

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 61.47  E-value: 7.54e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 67036678    3 TVDFSTIFARASAFSEPHHYFifcnmrfhaitVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:PRK12647 175 TYSLSELLASGDVIREHPLYL-----------AILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMV 238
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 38-77 8.45e-13

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 61.48  E-value: 8.45e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 67036678   38 ILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:PRK12645 214 ILILLGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMV 253
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 31-77 1.07e-12

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 61.09  E-value: 1.07e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 67036678   31 HAITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:PRK12644 200 PAVSVAVVLILVGALSKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMV 246
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 40-77 1.12e-12

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 61.08  E-value: 1.12e-12
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 67036678   40 LFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:MTH00066 213 LILAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMV 250
PRK12646 PRK12646
DUF4040 family protein;
20-77 4.53e-11

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 56.30  E-value: 4.53e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 67036678   20 HHYFIFcnmrfhaitvICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:PRK12646 206 HGLFIP----------MIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMV 253
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 34-77 2.91e-10

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 54.04  E-value: 2.91e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 67036678   34 TVICILLfiGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:PRK12648 209 ALVLILL--GAFTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMV 250
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 21-78 5.50e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 53.31  E-value: 5.50e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 67036678   21 HYFIFCNMRFHAITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:MTH00151 163 HWSILSMWDFKLSGWLGLLLVLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVT 220
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 23-78 9.57e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 52.73  E-value: 9.57e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 67036678   23 FIFCNMRFHAITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:MTH00209 164 IFYLNFNSNLGSVISVLIVLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVT 219
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 35-77 1.73e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 52.14  E-value: 1.73e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 67036678   35 VICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:PRK12649 215 ITLILIFIGAAAKSAQGPFYIWLPNAMEAPTPVSAFLHSATMV 257
PRK12650 PRK12650
DUF4040 family protein;
34-77 8.10e-09

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 50.04  E-value: 8.10e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 67036678   34 TVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:PRK12650 208 TVVAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVV 251
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 35-78 3.77e-08

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 48.21  E-value: 3.77e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 67036678   35 VICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:MTH00165 181 LIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVT 224
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 33-78 9.22e-08

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 46.92  E-value: 9.22e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 67036678    33 ITVICILLFIGAVGKSAQIGLHTRLPDA-MEGPTPVSAsIHAATMVT 78
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSA-LLAATLVK 126
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 35-78 4.03e-07

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 45.14  E-value: 4.03e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 67036678   35 VICILlfIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:MTH00207 182 ALSIM--IAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVT 223
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 23-78 3.41e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 42.60  E-value: 3.41e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 67036678   23 FIFCNMRFHAITVIC----ILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:MTH00095 149 FIFSSYYFFSFSFFSssmiLMLLLTSFTKSAQFPFSSWLPKAMSAPTPVSSLVHSSTLVT 208
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 32-71 1.22e-05

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 41.05  E-value: 1.22e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 67036678   32 AITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPvsASI 71
Cdd:PRK07390 219 TATLLGLALIAGPTGKCAQFPLHLWLDEAMEGPNP--ASI 256
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
31-73 1.53e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 38.14  E-value: 1.53e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 67036678   31 HAITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHA 73
Cdd:PRK08168 197 PSLQAAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHA 239
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-77 6.01e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 36.33  E-value: 6.01e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 67036678   34 TVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMV 77
Cdd:PRK06589 210 SIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVV 253
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 31-78 3.31e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 34.08  E-value: 3.31e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 67036678   31 HAITVICILLFIGAVGKSAQIGLHTRLPDAMEGPTPVSASIHAATMVT 78
Cdd:PRK08375 199 PTVVTAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTK 246
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 3-74 7.44e-03

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 33.20  E-value: 7.44e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 67036678   3 TVDFSTIFARASAFSEPhhyfifcnmrfhAITVICILLFIGAVGKSAQIGLHTRLPDAM-EGPTPVSASIHAA 74
Cdd:COG0651 186 TLNMADLAARLAELDPG------------LLLAAFALLLVGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGL 246
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 6-69 8.29e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 32.98  E-value: 8.29e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 67036678    6 FSTIFARASAFS---EPHHYFIFCNMRFHA-------ITVICILLFIGAVGKSAQIGLHTRLPDA-MEGPTPVSA 69
Cdd:PRK06458 176 FGTILVYANAATvmgDGEMAILWTELLKHAslldptlMKLAFVFLLIGFGTKVGLFPMHAWLPDAhSEAPSPVSA 250
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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