NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|61225242|gb|AAX40936|]
View 

cytochrome b, partial (mitochondrion) [Crocidura monacha]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 679.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00100  44 QILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTV 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00100 124 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHET 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00100 204 GSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLIIL 320
Cdd:MTH00100 284 IPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIIL 363

                        330
                 ....*....|...
gi 61225242  321 FIMPITSMIENQL 333
Cdd:MTH00100 364 ILMPIASLIENNL 376
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 679.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00100  44 QILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTV 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00100 124 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHET 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00100 204 GSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLIIL 320
Cdd:MTH00100 284 IPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIIL 363

                        330
                 ....*....|...
gi 61225242  321 FIMPITSMIENQL 333
Cdd:MTH00100 364 ILMPIASLIENNL 376
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-330 6.44e-117

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 342.93  E-value: 6.44e-117
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMY---LeTWNVGVLLL 77
Cdd:COG1290  53 QILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLL 131

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  78 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALAGVHLLF 156
Cdd:COG1290 132 LLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWL 211

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242 157 LHETGSNNPSG----LNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDmlGDPDNYIPANPLNTPPHIKPEWYFL 232
Cdd:COG1290 212 LHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFL 289

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242 233 FAYAILRSIP--NKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYpfVVIGQL 310
Cdd:COG1290 290 PFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPPIA--TLLGSI 367

                       330       340
                ....*....|....*....|
gi 61225242 311 ASVIYFLIILFIMPITSMIE 330
Cdd:COG1290 368 NTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-163 4.08e-79

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 239.96  E-value: 4.08e-79
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYM--YLETWNVGVLLLF 78
Cdd:cd00284  36 QILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLL 115

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  79 AVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLH 158
Cdd:cd00284 116 LTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLH 195


                ....*
gi 61225242 159 ETGSN 163
Cdd:cd00284 196 EQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-161 1.58e-73

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 225.34  E-value: 1.58e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242     1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYG--SYMYLETWNVGVLLLF 78
Cdd:pfam00033  27 QILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLV 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    79 AVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLH 158
Cdd:pfam00033 107 LTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLH 186


                  ...
gi 61225242   159 ETG 161
Cdd:pfam00033 187 ETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 186-250 2.48e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.49  E-value: 2.48e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 61225242   186 ILGALIMISMLSSLvlfSPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 250
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLL 100
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 679.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00100  44 QILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTV 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00100 124 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHET 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00100 204 GSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLIIL 320
Cdd:MTH00100 284 IPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIIL 363

                        330
                 ....*....|...
gi 61225242  321 FIMPITSMIENQL 333
Cdd:MTH00100 364 ILMPIASLIENNL 376
CYTB MTH00119
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 612.68  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00119  45 QILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLL 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00119 125 MATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHET 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00119 205 GSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLIIL 320
Cdd:MTH00119 285 IPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILL 364

                        330
                 ....*....|...
gi 61225242  321 FIMPITSMIENQL 333
Cdd:MTH00119 365 ILFPLLGALENKM 377
CYTB MTH00131
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 594.71  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00131  44 QILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLV 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00131 124 MMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHET 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00131 204 GSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLIIL 320
Cdd:MTH00131 284 IPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFL 363

                        330
                 ....*....|...
gi 61225242  321 FIMPITSMIENQL 333
Cdd:MTH00131 364 VLMPLAGWLENKA 376
CYTB MTH00074
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 585.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00074  45 QIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLV 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00074 125 MATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHET 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00074 205 GSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRS 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLIIL 320
Cdd:MTH00074 285 IPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFI 364

                        330
                 ....*....|...
gi 61225242  321 FIMPITSMIENQL 333
Cdd:MTH00074 365 IIIPLTGWLENKL 377
CYTB MTH00191
cytochrome b; Provisional
 1-325 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 567.24  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00191  41 QILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILS 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00191 121 MATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHET 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00191 201 GSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS 280

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLIIL 320
Cdd:MTH00191 281 IPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFL 360


                 ....*
gi 61225242  321 FIMPI 325
Cdd:MTH00191 361 LLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-323 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 549.00  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00156  34 QIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLV 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00156 114 MATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQT 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00156 194 GSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLIIL 320
Cdd:MTH00156 274 IPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFI 353


                 ...
gi 61225242  321 FIM 323
Cdd:MTH00156 354 INP 356
CYTB MTH00034
cytochrome b; Validated
 1-333 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 534.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00034  44 QIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLT 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00034 124 MLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQT 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00034 204 GSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLIIL 320
Cdd:MTH00034 284 IPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFL 363

                        330
                 ....*....|...
gi 61225242  321 FIMPITSMIENQL 333
Cdd:MTH00034 364 FFFPLISYLENKL 376
CYTB MTH00145
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 526.78  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00145  45 QILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLS 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00145 125 MGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHET 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00145 205 GSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLIIL 320
Cdd:MTH00145 285 IPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFL 364

                        330
                 ....*....|
gi 61225242  321 fIMPITSMIE 330
Cdd:MTH00145 365 -ILPLVQKLW 373
CYTB MTH00016
cytochrome b; Validated
 1-333 3.26e-179

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 500.74  E-value: 3.26e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00016  45 QILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLT 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00016 125 MATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQT 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00016 205 GSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFlIIL 320
Cdd:MTH00016 285 IPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYF-FYF 363

                        330
                 ....*....|...
gi 61225242  321 FIMPITSMIENQL 333
Cdd:MTH00016 364 MINPLLMKLWDKL 376
CYTB MTH00022
cytochrome b; Validated
 1-333 1.49e-161

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 456.08  E-value: 1.49e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00022  43 QIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLT 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00022 123 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVD 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00022 203 GSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLIIL 320
Cdd:MTH00022 283 IPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFL 362

                        330
                 ....*....|...
gi 61225242  321 FIMPITSMIENQL 333
Cdd:MTH00022 363 VLIPLLGELENQL 375
CYTB MTH00053
cytochrome b; Provisional
 1-333 2.84e-159

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 450.31  E-value: 2.84e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00053  45 QIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLM 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00053 125 ILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHED 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00053 205 GSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLIIL 320
Cdd:MTH00053 285 IPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFL 364

                        330
                 ....*....|...
gi 61225242  321 FIMPITSMIENQL 333
Cdd:MTH00053 365 ILMPLAGYLENKL 377
CYTB MTH00224
cytochrome b; Provisional
 1-333 1.59e-155

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 440.90  E-value: 1.59e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00224  45 QVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILT 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00224 125 MATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQT 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00224 205 GSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFliIL 320
Cdd:MTH00224 285 IPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYF--SY 362

                        330
                 ....*....|....
gi 61225242  321 FIM-PITSMIENQL 333
Cdd:MTH00224 363 FIIsPAISKLWDDL 376
CYTB MTH00033
cytochrome b; Provisional
 1-331 4.25e-119

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 348.47  E-value: 4.25e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00033  41 QILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIM 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00033 121 MLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEK 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLsSLVLFSP---DMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAI 237
Cdd:MTH00033 201 GSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVF-VIIGIEPrieTLLQDPENFIQANPLVTPVHIQPEWYFLFAYAI 279

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  238 LRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPV-EYPFVVIGQLASVIYF 316
Cdd:MTH00033 280 LRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYF 359

                        330
                 ....*....|....*
gi 61225242  317 LIILFIMPITSMIEN 331
Cdd:MTH00033 360 GYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-330 6.44e-117

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 342.93  E-value: 6.44e-117
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMY---LeTWNVGVLLL 77
Cdd:COG1290  53 QILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLL 131

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  78 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALAGVHLLF 156
Cdd:COG1290 132 LLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWL 211

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242 157 LHETGSNNPSG----LNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDmlGDPDNYIPANPLNTPPHIKPEWYFL 232
Cdd:COG1290 212 LHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFL 289

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242 233 FAYAILRSIP--NKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYpfVVIGQL 310
Cdd:COG1290 290 PFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPPIA--TLLGSI 367

                       330       340
                ....*....|....*....|
gi 61225242 311 ASVIYFLIILFIMPITSMIE 330
Cdd:COG1290 368 NTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-323 1.38e-108

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 320.73  E-value: 1.38e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00086  33 QILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00086 113 MMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHST 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNPSGLNSDTDKIPFHPYYTIKDILGaLIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00086 193 GSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  241 IPNKLGGVLALVLSILILMIIPLLhtaKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLIIL 320
Cdd:MTH00086 272 IPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLIL 348


                 ...
gi 61225242  321 FIM 323
Cdd:MTH00086 349 LML 351
CYTB MTH00046
cytochrome b; Validated
 1-322 2.92e-87

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 266.08  E-value: 2.92e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLETWNVGVLLLFAV 80
Cdd:MTH00046  35 QVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLV 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   81 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHET 160
Cdd:MTH00046 115 MVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  161 GSNNP-SGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILR 239
Cdd:MTH00046 195 GSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLR 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  240 SIPNKLGGVLALVLSILILMIipllhTAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLASVIyFLII 319
Cdd:MTH00046 275 SINSKIGGLVLVLSFLFFLWV-----PTFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL-MVLL 348


                 ...
gi 61225242  320 LFI 322
Cdd:MTH00046 349 LFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-163 4.08e-79

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 239.96  E-value: 4.08e-79
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYM--YLETWNVGVLLLF 78
Cdd:cd00284  36 QILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLL 115

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242  79 AVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLH 158
Cdd:cd00284 116 LTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLH 195


                ....*
gi 61225242 159 ETGSN 163
Cdd:cd00284 196 EQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-161 1.58e-73

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 225.34  E-value: 1.58e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242     1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYG--SYMYLETWNVGVLLLF 78
Cdd:pfam00033  27 QILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLV 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    79 AVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLH 158
Cdd:pfam00033 107 LTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLH 186


                  ...
gi 61225242   159 ETG 161
Cdd:pfam00033 187 ETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 164-311 1.81e-49

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 162.04  E-value: 1.81e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242 164 NPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPN 243
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 61225242 244 KLGGVLALVLSILILMIIPLLHTAKQRSmMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLA 311
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
45-210 4.99e-46

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 153.94  E-value: 4.99e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    45 SMFFICLFLHVGRGLYYGSYMYLE--TWNVGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIW 122
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   123 GGFSVDKATLTRFFAFHF-ILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMISMLSSLVL 201
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 61225242   202 FSPDMLGDP 210
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
215-315 5.06e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 133.37  E-value: 5.06e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   215 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTW 294
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 61225242   295 IGGQPVEYPFVVIGQLASVIY 315
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 1-165 1.27e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 136.38  E-value: 1.27e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLE--TWNVGVLLLF 78
Cdd:PRK03735  55 QILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFF 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   79 AVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALAGVHLLFL 157
Cdd:PRK03735 135 VTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMI 214


                 ....*...
gi 61225242  158 HETGSNNP 165
Cdd:PRK03735 215 RKQGISGP 222
petB CHL00070
cytochrome b6
 1-166 9.07e-32

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 118.28  E-value: 9.07e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242    1 QILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLE--TWNVGVLLLF 78
Cdd:CHL00070  47 QVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAV 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 61225242   79 AVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALAGVHLLFL 157
Cdd:CHL00070 127 LTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMI 206


                 ....*....
gi 61225242  158 HETGSNNPS 166
Cdd:CHL00070 207 RKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 186-250 1.19e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 56.34  E-value: 1.19e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 61225242 186 ILGAlimISMLSSLVLFSPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 250
Cdd:COG5679  45 ILGT---IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVM 101
petD CHL00058
cytochrome b6/f complex subunit IV
 186-250 1.33e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 56.16  E-value: 1.33e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 61225242  186 ILGAlimISMLSSLVLFSPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 250
Cdd:CHL00058  44 ILGT---IACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLL 100
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 186-250 2.48e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.49  E-value: 2.48e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 61225242   186 ILGALIMISMLSSLvlfSPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 250
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLL 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH